Directory SL/AP_TREE/

Total Files:
8
Deleted Files:
0
Lines of Code:
2371

[root]/SL/AP_TREE

Lines of Code

SL/AP_TREE/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
westram 146 (100.0%) 2279 (100.0%) 15.6

Most Recent Commits

westram 2019-05-10 13:57 Rev.: 17877


* reintegrates 'gcc' into 'trunk'
* adds: log:branches/gcc@17850:17876

10 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+1 -1), AP_Tree.hxx (+9 -7)
westram 2018-10-17 11:00 Rev.: 17478


* reintegrates 'svalues' into 'trunk'
- implements #614
* adds: log:branches/svalues@17357:17419,17428:17464,17469,17471:17477

1 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.cxx (+1 -1)
westram 2018-10-02 16:08 Rev.: 17428


* partial merge from 'svalues' into 'trunk'
- root branches always need to have identical remarks (associated with the root-edge)
* condition previously implicit, now hardened by tests/assertions/...
* fixed several bugs that violated this condition
* adds: log:branches/svalues@17420:17427

57 lines of code changed in 3 files:

  • SL/AP_TREE: AP_Tree.cxx (+26), AP_Tree.hxx (+30 -1), Makefile (+1)
westram 2018-07-23 16:52 Rev.: 17262


* partial merge from 'group' into 'trunk'
- fixes to arb_progress
* adds:
- log:branches/group@17191:17218,17220:17260
- log:branches/progress@17195:17216,17218:17259

1 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.cxx (+1 -1)
westram 2018-06-15 13:08 Rev.: 17110


* reintegrates 'tree' into 'trunk'
- implements #735
* adds:
- log:branches/addtest@17040:17044
- log:branches/tree@16921:17109

165 lines of code changed in 3 files:

  • SL/AP_TREE: AP_Tree.cxx (+125 -77), AP_Tree.hxx (+21 -10), AP_TreeSet.cxx (+19 -8)
westram 2017-11-28 19:22 Rev.: 16766


* reintegrates 'gcc' into 'trunk'
- mostly cosmetics changes
* adds: log:branches/gcc@16655,16741:16743,16752:16765

2 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.cxx (+2 -4)
westram 2017-11-28 18:09 Rev.: 16763


* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751

36 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.cxx (+36 -36)
westram 2017-11-17 13:54 Rev.: 16668


* full update from child 'gcc' into 'trunk'
- fix/suppress (new) compiler warnings
- skip vectorizer notes
* adds: log:branches/gcc@16656:16667

1 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.hxx (+1)
westram 2017-09-19 14:40 Rev.: 16391


* full update from child 'aci' into 'trunk'
- allow to view console from inside ARB
- slightly tweaked ACI trace
* adds: log:branches/aci@16386:16390

1 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.cxx (+1 -1)
westram 2017-06-29 15:18 Rev.: 16043


* reintegrates 'fix' into 'trunk'
- valgrind fixes
* generally repaired valgrinding (external tools)
* {{{group_scaling}}} was not initialized correct (RUI)
- DRYed code to run external tools from unittests
* adds: log:branches/fix@16037:16042

55 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+31 -23), AP_Tree.hxx (+24 -16)
westram 2017-05-21 17:59 Rev.: 15966


* reintegrates 'group' into 'trunk'
- implements #652 (group search)
* adds: log:branches/group@15733:15740,15743:15748,15750:15752,15754,15756,15758:15777,15781:15793,15796,15798:15806,15808:15817,15819:15965

4 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.cxx (+4 -1)
westram 2017-03-28 15:32 Rev.: 15703


* reintegrates 'group' into 'trunk'
- implements #709
* adds: log:branches/group@15693:15702

8 lines of code changed in 2 files:

  • SL/AP_TREE: AP_TreeSet.cxx (+7), AP_TreeSet.hxx (+1)
westram 2017-03-26 17:00 Rev.: 15691


* reintegrates 'keys' into 'trunk'
- implements part of #687 (species traversal via keys)
- adds temp. unfolding of selected species
- several fixes to [15665] (PARSIMONY)
* adds: log:branches/keys@15591:15690

164 lines of code changed in 5 files:

  • SL/AP_TREE: AP_Tree.cxx (+76 -12), AP_Tree.hxx (+7), AP_TreeSet.cxx (new 24), AP_TreeSet.hxx (new 29), Makefile (+28 -1)
westram 2017-03-23 14:58 Rev.: 15665


* reintegrates 'refactor' into 'trunk'
- refactored AWT_graphic
* now have explicit states with different permissions
1. update model + request view/DB updates (AWT_auto_refresh)
- always preceeded by DB->model up-to-date-check
- automatically updates the view on destruction
2. update (DB and view) from model
3. neither
- benefits
* saves several view-updates
* unproblematic nesting of functions requesting view-updates
* will allow
- delayed view-updates and
- easier modification of update logic
- fixes a bunch of update-issues (found on the way)
* adds: log:branches/refactor@15613:15615,15627:15637,15639:15664

5 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+4 -11), AP_Tree.hxx (+1 -5)
westram 2017-03-15 11:05 Rev.: 15642


* merge [15638] from 'refactor' into 'trunk'
- automatically adapt AWAR maximas (branch analysis)

19 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+16 -6), AP_Tree.hxx (+3 -3)
westram 2017-01-26 11:14 Rev.: 15627


* partial merge from 'refactor' into 'trunk'
- remove table code (obsolete; see also [12758])
- ~~eliminate obsolete type {{{GB_LINK}}}~~ (./) by [15631]
* adds: log:branches/refactor@15616:15626

4 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+1 -6), AP_Tree.hxx (+3 -4)
westram 2017-01-04 18:06 Rev.: 15513


* reintegrates 'warnings' into 'trunk'
- activate additional warnings (gcc 5.x++)
- Cxx11-forward final (classes+methods)
- fix tag problems caused by using preprocessor
* adds: log:branches/warnings@15486:15489,15491:15501,15506:15512

12 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.hxx (+12 -3)
westram 2016-10-15 11:47 Rev.: 15339


* partial merge from 'sync' into 'trunk'
- allow to install a canvas-update-callback
- support for custom devices
* adds: log:branches/sync@15313:15314,15319,15330

0 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.hxx (-1)
westram 2016-08-17 20:39 Rev.: 15198


* remove {{{virtual}}} if {{{OVERRIDE}}} is present
- OVERRIDE implies 'implicit virtual' (if code compiles as C++11 <- tested on build server!)

1 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.hxx (+1 -1)
westram 2016-08-11 11:05 Rev.: 15176


* reintegrates 'fixres' into 'trunk'
- fixes #715
* adds: log:branches/fixres@15127:15175

1 lines of code changed in 1 file:

  • SL/AP_TREE: Makefile (+1)
westram 2016-08-03 16:43 Rev.: 15132


* activate shading for NDS-list view
- shading is done only
* for shown section (on-the-fly)
* if species is not colored elsewise
- fixes bug: ARB_color was no longer displayed for DB w/o tree (with default settings)
* {{{TREE_recompute_cb}}} crashed if no tree shown. fixed.
* {{{TREE_recompute_and_rezoom_cb}}}: refresh canvas also if no tree shown

1 lines of code changed in 1 file:

  • SL/AP_TREE: AP_TreeShader.hxx (+1 -1)
westram 2016-07-14 15:15 Rev.: 15054


* reintegrates 'color' into 'trunk'
- implements #443 (+parts of #444)
* adds: log:branches/color@14920:14921,14923:14928,14930:14939,14941:14951,14954:14956,14958:14959,14961:14964,14968,14970:14981,14985,14988,14990:14992,14994:14999,15001:15004,15007,15009,15012:15026,15028:15035,15037:15039,15041:15053

217 lines of code changed in 5 files:

  • SL/AP_TREE: AP_Tree.cxx (+54 -42), AP_Tree.hxx (+8 -45), AP_TreeColors.hxx (new 60), AP_TreeShader.hxx (new 91), Makefile (+4)
westram 2016-06-15 13:35 Rev.: 14943


* merge 2 WINDOW-modifications from 'color' into 'trunk'
* adds: log:branches/color@14929,14940

4 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+2 -1), Makefile (+2)
westram 2016-05-18 16:48 Rev.: 14848


* renamed GC used for IRS group boxes

1 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.hxx (+1 -1)
westram 2016-01-21 09:10 Rev.: 14668


* reintegrates 'fix' into 'trunk'
- implements #118, #209
- fixes #405
- vertical group scaling now customizable
* adds: log:branches/fix@14645:14667

31 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+19 -8), AP_Tree.hxx (+12 -5)
westram 2015-08-26 12:24 Rev.: 14203


- DRY digit calculation

1 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.cxx (+1 -1)
westram 2015-07-30 12:05 Rev.: 14098


* refactored colorset handling
- moved basics to ARBDB
- remove attributes stub from AWT (was done for #443; redo if needed)
- replace {{{AW_find_color_group}}} with {{{AW_find_active_color_group}}} (w/o bool-param) and {{{GBT_get_color_group}}}
- colorset functions (create,restore,save+load) all operate on string arrays (containing "name=color" entries)

1 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+1 -2), Makefile (-1)
westram 2015-06-08 20:28 Rev.: 13873


* add 6 more probe colors (rainbow colors)
* update color names (=userland reset)
* update help
* Note: fails treedisp unittest

21 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.hxx (+21 -5)
westram 2015-04-18 19:47 Rev.: 13752


* destroying {{{TreeNode}}}s from {{{TreeRoot}}} leads to pure virtual method call
- reason: class derived from {{{TreeRoot}}} already under deconstruction
- solution: delete from dtor of derived class. fixes #648

1 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.cxx (+1 -1)
westram 2015-03-30 10:28 Rev.: 13639


* full update from child 'pars' into 'trunk'
- cleanup patches
* adds:
- log:branches/pars@13628:13638

2 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+1 -36), AP_Tree.hxx (+1 -19)
westram 2015-03-29 12:47 Rev.: 13625


* reintegrates 'pars' into 'trunk'
- fixes #528, #609, #620, #631, #633, #640, #641
- implements #619, #627
* adds:
- log:branches/addtest@13123:13260,13523:13551,13570
- log:branches/check@13365:13375,13450:13457
- log:branches/check2@13458:13465
- log:branches/fix@13522:13588
- log:branches/fixres@13270:13277,13279:13293,13295:13326
- log:branches/pars@12938:13280,13282:13325,13327:13387,13389:13527,13530:13624

79 lines of code changed in 3 files:

  • SL/AP_TREE: AP_Tree.cxx (+56 -217), AP_Tree.hxx (+22 -42), Makefile (+1 -1)
westram 2015-01-23 15:19 Rev.: 13443


* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

2 lines of code changed in 1 file:

  • SL/AP_TREE: Makefile (+2 -2)
westram 2014-04-29 13:46 Rev.: 12121


* reintegrates 'tree' into 'trunk'
- fixes #527
* adds:
- log:branches/tree@12116:12120

63 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+59 -10), AP_Tree.hxx (+4 -1)
westram 2014-01-20 17:08 Rev.: 11488


* reintegrates 'tree' into 'trunk'
- implements #417 (multifurcate tree)
- tree display
* adds MULTIFURC MODE
* reordered modes (synchronizes NTREE and PARSIMONY)
- branch analysis
* display number of multifurcations in 'mark long branches'
* display "in-tree-distance" and "per-species-distance"
- added function to toggle '100%' bootstraps
- document bug in GBT_remove_leafs (#452)
* adds:
- log:branches/tree@11425:11487

63 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+63 -67), AP_Tree.hxx (-6)
westram 2014-01-10 20:16 Rev.: 11464


- un-dummy-fied transaction (renames only)

7 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.cxx (+7 -7)
westram 2014-01-04 14:18 Rev.: 11422


* fixed assertion failure / wrong message in NDEBUG
- when selecting a species in a folded group (with autojump activated)
- introduced in [11380]
* do not report "No species selected" during autojump

7 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+6), AP_Tree.hxx (+1)
westram 2013-12-26 13:48 Rev.: 11401


* reintegrates 'tree' into 'trunk':
- consensus trees:
* support for merging partial trees ("worked" before, but results were crap; implements #65)
* generated trees are automatically re-rooted and -ordered
* always list source trees in consensus-tree-comment; show info about partial trees
* fixed progress bar
- made GBT_TREE a base class of other tree classes (implements #31)
- save tree properties in properties (not in DB)
- new functions 'Remove zombies/marked from ALL trees'
- tree load/save: layout fixes
- unit tests
* added tests for basic tree modifications (PARSIMONY)
- performance:
* compute_tree updates tree information in one traversal
* tree generators are now capable to generate any type of tree (w/o needing to copy it once)
- bugfixes:
* NNI (of marked species) was also always performed for colored species
* centered beautify-order is stable now
* improved 'search optimal root'
* adds:
- log:branches/tree@10500:10534,10542:11182,11184:11186,11188:11400
- log:branches/treeTests@11198:11335

299 lines of code changed in 3 files:

  • SL/AP_TREE: AP_Tree.cxx (+171 -436), AP_Tree.hxx (+127 -105), Makefile (+1)
westram 2013-11-14 19:19 Rev.: 11126


* reintegrates 'redev' into 'trunk':
- fixed tree key-bindings (mark, fold, ...)
- improved several tree-commands (move, rotate, spread, length, width)
- fixed #68
* adds:
- log:branches/dev@7912,7914,7938,7942:7943
- log:branches/redev@11088:11119,11122:11125

52 lines of code changed in 2 files:

  • SL/AP_TREE: AP_Tree.cxx (+10 -2), AP_Tree.hxx (+42 -21)
westram 2013-11-02 21:14 Rev.: 11042


* use typed DB callbacks (tree related)

6 lines of code changed in 1 file:

  • SL/AP_TREE: AP_Tree.cxx (+6 -6)
westram 2013-11-02 17:41 Rev.: 11034


* depends for [11033]

1 lines of code changed in 1 file:

  • SL/AP_TREE: Makefile (+1)

(57 more)

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