Directory PERL_SCRIPTS/IFTHELP/

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westram 2008-03-04 14:31 Rev.: 5195

- moved in REPOSITORY to ../ARBTOOLS/IFTHELP

0 lines of code changed in 4 files:

• PERL_SCRIPTS/IFTHELP: dssp2fasta.pl (del), embl_gen_long_features.pl (del), format_dssp.pl (del), genbank_gen_long_features.pl (del)

murban 2008-02-08 20:13 Rev.: 5044

added functions for protein structure comparison; added import filters and perl script for dssp files; added menu entry in EDIT4 for choosing the active protein structure SAI

107 lines of code changed in 1 file:

• PERL_SCRIPTS/IFTHELP: format_dssp.pl (new 107)

westram 2007-12-07 14:33 Rev.: 4985

- reset mode at end of sequence data.
Now files with multiple entries work as well

4 lines of code changed in 1 file:

• PERL_SCRIPTS/IFTHELP: genbank_gen_long_features.pl (+4 -1)

westram 2007-12-06 19:58 Rev.: 4982

- converts secondary structure into 2nd species

5 lines of code changed in 1 file:

• PERL_SCRIPTS/IFTHELP: dssp2fasta.pl (+5 -1)

murban 2007-12-06 17:06 Rev.: 4978

- dssp -> fasta converter

1 lines of code changed in 1 file:

• PERL_SCRIPTS/IFTHELP: dssp2fasta.pl (new 1)

westram 2007-11-21 17:17 Rev.: 4951

- unwrap long qualifiers
- prefix with FT and FTx. Makes feature table
compatible with EMBL format

1 lines of code changed in 1 file:

• PERL_SCRIPTS/IFTHELP: genbank_gen_long_features.pl (new 1)

westram 2007-11-06 16:43 Rev.: 4924

- fixed perl path

1 lines of code changed in 1 file:

• PERL_SCRIPTS/IFTHELP: embl_gen_long_features.pl (+1 -1)

westram 2005-03-18 16:28 Rev.: 3772

- fix for feature names (may also contain non-identifier characters)

4 lines of code changed in 1 file:

• PERL_SCRIPTS/IFTHELP: embl_gen_long_features.pl (+4 -3)

westram 2005-03-17 17:28 Rev.: 3768

- perl script to change embl feature table for more simple
ift-parsing

3 lines of code changed in 1 file:

• PERL_SCRIPTS/IFTHELP: embl_gen_long_features.pl (new 3)