Directory AISC_MKPTPS/

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westram 2022-03-04 11:26 Rev.: 18959

* reintegrates 'progress' into 'trunk'
- implements #789
* adds: log:branches/progress@18885:18958

1 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (+1)

westram 2021-09-15 12:52 Rev.: 18730

* remove trailing whitespace from c source.

5 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+5 -5)

westram 2021-09-15 12:27 Rev.: 18721

* select units using {{{wildcard}}}.

1 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (+1 -1)

westram 2019-03-04 14:22 Rev.: 17634

* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

1 lines of code changed in 1 file:

• AISC_MKPTPS: .gitignore (new 1)

westram 2018-04-05 11:09 Rev.: 16873

* fix typos ("neither")

1 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+1 -1)

westram 2017-11-28 18:22 Rev.: 16766

* reintegrates 'gcc' into 'trunk'
- mostly cosmetics changes
* adds: log:branches/gcc@16655,16741:16743,16752:16765

1 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+1 -2)

westram 2017-11-28 17:09 Rev.: 16763

* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751

45 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+45 -47)

westram 2017-11-06 13:54 Rev.: 16628

* reintegrates 'vectorize' into 'trunk'
- fixes #700
* documented vectorization-checks
* fine-grained check based on gcc-version
- drops old gcc-versions (<4.4.3)
- new attribute {{{__ATTR__DONT_VECTORIZE}}}
* disabled vectorization of {{{POS_TREE2::init_static()}}} for newer gcc-versions (generated code fails tests)
- added a bunch of new vectorization-checks (probably irrelevant to overall performance)
* adds: log:branches/vectorize@15531:16585,16595:16627

4 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+4 -1)

westram 2017-08-09 13:59 Rev.: 16223

* reintegrates 'cover' into 'trunk'
- fixes compilation with COVERAGE
* ARB perl module failed to load (since [13739])
* linking executables broken (apparently since [14038])
* adds: log:branches/cover@16213:16222

1 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (+1 -1)

westram 2016-09-27 10:12 Rev.: 15274

* fix promotion of comments
- interpreted text already is '''content''' of comment (remove code interpreting comment delimiters there)

1 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+1 -11)

westram 2016-08-11 10:05 Rev.: 15176

* reintegrates 'fixres' into 'trunk'
- fixes #715
* adds: log:branches/fixres@15127:15175

4 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+4 -4)

westram 2015-07-20 13:13 Rev.: 14053

* accept '{{{static __ATTR__XXX}}}' (caused several prototypes to be skipped)

15 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+15 -23)

westram 2015-01-23 14:19 Rev.: 13443

* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

1 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (+1 -1)

westram 2014-10-17 15:43 Rev.: 13077

* reintegrates 'sanitize' into 'trunk'
* adds:
- log:branches/sanitize@13023:13076

78 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+78 -36)

westram 2014-08-27 11:21 Rev.: 12783

* publish TESTs for which nm 2.24 fails to export source location

1 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+1)

westram 2014-03-25 11:06 Rev.: 11889

- add missing comment to closing #endif of test-sections

1 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+1 -1)

westram 2014-02-25 16:50 Rev.: 11656

- added dependencies to main-object(s)

1 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (+1 -1)

westram 2014-01-04 13:48 Rev.: 11423

* reintegrates 'tree' into 'trunk':
- topology ordering (beautify trees):
* new orders for radial trees
* order tree according to other tree (implements #445)
- tweaked 'Move node info' / 'Compare topology' (implements #450)
* write log entry to tree comment
* verbose output into logfile
* updated help and GUI
* adds:
- log:branches/tree@11403:11422

8 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+8 -5)

westram 2013-11-01 14:09 Rev.: 11022

* allow '+' for simple AND-match (-F and -S)

34 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+34 -13)

westram 2013-10-31 14:10 Rev.: 10996

* use cflags before cxxflags

1 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (+1 -1)

westram 2013-10-30 15:58 Rev.: 10974

* renamed include variables

1 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (+1 -1)

westram 2013-10-29 12:55 Rev.: 10956

* made A_CC and A_CXX consistent
- A_CXX previously contained cxxflags
- cxxflags are now passed down and used separately

1 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (+1 -2)

westram 2013-10-29 12:23 Rev.: 10955

- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

1 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (+1 -1)

westram 2013-10-29 11:43 Rev.: 10954

- document mechanism used by ARB to export variables to submakefiles
- document most important variables

1 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (+1 -1)

westram 2013-06-13 13:31 Rev.: 10148

* makedepend changed behavior between 1.0.2 and 1.0.4
- 1.0.4 does generate impossible dependencies (see [10143] for an example)
- force correct behavior by defining SIMPLE_ARB_ASSERT on CLI (when invoking compiler and makedepend)

9 lines of code changed in 2 files:

• AISC_MKPTPS: Makefile (+8 -3), mkptypes.cxx (+1 -2)

westram 2013-05-10 15:49 Rev.: 10003

* merge from ptsfix [9380]

0 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (-1)

epruesse 2013-04-14 14:13 Rev.: 9908

prepare for removal of AW_VARIABLE_TYPE in GTK branch

1 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (+1)

epruesse 2013-04-13 18:23 Rev.: 9899

pass down argc/argv to AW_root::AW_root (for GTK)
GTK will pick its parameters (e.g. --g-fatal-warnings) from argv and
remove them, hence argv must not be const and AW_root() should
be called before command line parsing (if possible).

1 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+1 -1)

westram 2013-02-27 19:28 Rev.: 9619

- cosmetics: left-align '&' and '*' of ref-params in generated prototypes

31 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+31 -13)

westram 2013-02-26 11:32 Rev.: 9600

* aisc_mkpt
- default is to generate ANSI headers now (options -A and -z are invalid now)
- added options to force K&R (not used)
- reordered help options
* fixed all calls using -A and/or -z
* no longer use K&R prototypes in SL/TREEDISP

44 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+44 -31)

westram 2013-02-13 12:24 Rev.: 9575

- effect of [9574] (comments only)

1 lines of code changed in 1 file:

• AISC_MKPTPS: Makefile (+1 -1)

westram 2013-02-09 11:16 Rev.: 9516

- reintegrated branch 'cxx11'

23 lines of code changed in 2 files:

• AISC_MKPTPS: Makefile (+4), mkptypes.cxx (+19 -67)

westram 2012-11-23 18:15 Rev.: 9226

* do not expect negations (in macro names)

1 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+1 -1)

westram 2012-11-23 17:58 Rev.: 9225

* rename unit test macros
- TEST_ASSERT.. -> TEST_EXPECT..

3 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+3 -3)

westram 2012-11-23 17:47 Rev.: 9224

* eliminated old TEST_ASSERT (pre-[8219]-style)
- replaced by new TEST_ASSERT (expecting expression equals true), TEST_ASSERT_NOTNULL or TEST_ASSERT_NONZERO

1 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+1 -1)

westram 2012-09-14 17:55 Rev.: 8883

* fixed cppcheck warnings

12 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+12 -20)

westram 2012-05-25 09:56 Rev.: 8752

- removed possibility to generate prototypes for static/inline functions

5 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+5 -11)

westram 2012-05-25 09:31 Rev.: 8751

* guided by clang static checker:
- fix or at least comment many assigned but never used values

2 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+2 -4)

westram 2012-05-24 10:59 Rev.: 8748

- use simpler way to declare attributed static/inline functions

24 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (+24 -9)

westram 2012-04-19 08:13 Rev.: 8607

merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] [8142] [8143] [8144] [8222]
(this revives the reverted patches [8129] [8130] [8131] [8132]; see [8133])

* fixes
- some free/delete mismatches
- wrong definition of ORF objects (Level was no bit value)
- amino consensus (failed for columns only containing 'C')
* rename
- AA_sequence_term -> orf_term
- ED4_sequence_terminal_basic -> ED4_abstract_sequence_terminal
* cleaned up hierarchy dumps
* tweaked is_terminal()/to_terminal()

0 lines of code changed in 1 file:

• AISC_MKPTPS: mkptypes.cxx (changed)

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