Lines of Code
| Author | Changes | Lines of Code | Lines per Change |
|---|---|---|---|
| Totals | 158 (100.0%) | 42941 (100.0%) | 271.7 |
| jobb | 64 (40.5%) | 20814 (48.5%) | 325.2 |
| oldcode | 25 (15.8%) | 15408 (35.9%) | 616.3 |
| westram | 66 (41.8%) | 6471 (15.1%) | 98.0 |
| meierh | 1 (0.6%) | 226 (0.5%) | 226.0 |
| yadhu | 1 (0.6%) | 21 (0.0%) | 21.0 |
| epruesse | 1 (0.6%) | 1 (0.0%) | 1.0 |
* reintegrates 'help' into 'trunk'
- preformatted text gets checked for width now (to enforce it fits into the arb help window).
- fixed help following these checks, using the following steps:
* ignore problems in foreign documentation.
* increase default help window width.
* introduce control comments to
- accept oversized preformatted sections.
- enforce preformatted style for whole sections.
- simply define single-line preformatted sections\\Used intensive for definition of internal script languages.
- fixed several non-related problems found in documentation.
- minor layout changes for HTML version of arb help (more compacted; highlight anchored/all sections).
- refactor system interface (GUI version) and use it from help module.
* adds: log:branches/help@19532:19574
2743 lines of code changed in 4 files:
* reintegrates 'gde' into 'trunk'
* adds: log:branches/gde@19460:19479
308 lines of code changed in 13 files:
* introduce {{{onlyC_flags}}}
- flags used for C compilation only.
- similar to {{{cxxflags}}} (references added).
- pass down onlyC_flags into AxML, CLUSTAL, CLUSTALW, FASTDNAML, FASTTREE, GL, MrBAYES, PHYLIP, PHYML*, RAxML, SINA(unused), SOURCE_TOOLS, SUPPORT, TOOLS, TREEGEN + TREEPUZZLE.
- set flags to {{{-Werror-implicit-function-declaration}}}
* error is only effective in a small part of these modules.
* TODO: need to activate warnings -> will activate the error as well.
2 lines of code changed in 1 file:
* fix use of {{{gets()}}} (globally):
- provide a drop-in replacement for {{{gets()}}}
* only requires to specify buffersize.
- use {{{gets_noOverflow()}}} in READSEQ, SUPPORT, CLUSTAL + CLUSTALW.
* adapt {{{getstr()}}}
45 lines of code changed in 7 files:
- remove executable flag
0 lines of code changed in 3 files:
* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442
1 lines of code changed in 1 file:
fix common typos reported by lintian
- splitted -> split (irregular verb)
- ressources -> resources
- explicitely -> explicitly
1 lines of code changed in 1 file:
* renamed include variables
1 lines of code changed in 1 file:
- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)
2 lines of code changed in 1 file:
* reintegrates 'help' into 'trunk':
* adds:
- log:branches/help@10647:10841
- log:branches/helptest@10704:10720
99 lines of code changed in 2 files:
- effect of [9574] (comments only)
1 lines of code changed in 1 file:
- merge from stable_5.0 [7758]
1 lines of code changed in 1 file:
* compiler-messages (merges [6848] [6849] [6850] [6851] [6853] [6855] [6856] [6860] from refactor)
- errors get listed before warnings
- pipe all compilations through postcompile filter
- optionally filter warnings and/or stop at 1st error (controllable by POST_COMPILE in ARB Makefile)
- no warnings for ptpan (too many; version in trunk is outdated)
1 lines of code changed in 1 file:
* spellchecked all (phew)
1 lines of code changed in 1 file:
* removed manual hyphenations from original docs
4 lines of code changed in 1 file:
* fixed spelling of 'occurrence'
1 lines of code changed in 1 file:
- added 'clean'
6 lines of code changed in 1 file:
fixed and reformatted dependencies (using fix_depends.pl)
38 lines of code changed in 1 file:
- fixed for ClustalW v 1.83
18 lines of code changed in 1 file:
updated to version 1.83
2795 lines of code changed in 14 files:
not in version 1.83
0 lines of code changed in 4 files:
- updated dependencies for all Makefiles
- rewrote dependency generation code. Only real changes
propagate into Makefiles - so it does no longer hurt to
call 'make depends' in ARB directory!
43 lines of code changed in 1 file:
Mac OSX patches from Ben Hines
6 lines of code changed in 1 file:
*** empty log message ***
19 lines of code changed in 1 file:
makefile dependency generation fixed for GDE
21 lines of code changed in 1 file:
Most changes are made due to activating more warnings for the c++ compiler (linux)
48 lines of code changed in 1 file:
*** empty log message ***
20148 lines of code changed in 37 files:
old version of CLUSTALW removed
0 lines of code changed in 26 files:
*** empty log message ***
666 lines of code changed in 1 file:
*** empty log message ***
146 lines of code changed in 1 file:
haralds checkin
226 lines of code changed in 1 file:
Updated dependencies
142 lines of code changed in 1 file:
Initial revision
15408 lines of code changed in 25 files: