Directory GDE/CLUSTALW/

Directory Created:
2000-11-23 11:41
Total Files:
33
Deleted Files:
5
Lines of Code:
21348

[root]/GDE/CLUSTALW

Lines of Code

GDE/CLUSTALW/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 133 (100.0%) 39843 (100.0%) 299.5
jobb 64 (48.1%) 20814 (52.2%) 325.2
oldcode 25 (18.8%) 15408 (38.7%) 616.3
westram 41 (30.8%) 3373 (8.5%) 82.2
meierh 1 (0.8%) 226 (0.6%) 226.0
yadhu 1 (0.8%) 21 (0.1%) 21.0
epruesse 1 (0.8%) 1 (0.0%) 1.0

Most Recent Commits

westram 2015-05-30 14:37 Rev.: 13845


- remove executable flag

0 lines of code changed in 3 files:

  • GDE/CLUSTALW: clustalw.doc (-1), clustalw.ms (-1), globin.pep (-1)
westram 2015-01-23 15:19 Rev.: 13443


* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

1 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+1 -1)
epruesse 2014-09-02 17:51 Rev.: 12815

fix common typos reported by lintian
- splitted -> split (irregular verb)
- ressources -> resources
- explicitely -> explicitly

1 lines of code changed in 1 file:

  • GDE/CLUSTALW: interface.c (+1 -1)
westram 2013-10-30 16:58 Rev.: 10974


* renamed include variables

1 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+1 -1)
westram 2013-10-29 13:23 Rev.: 10955


- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

2 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+2 -2)
westram 2013-10-18 14:22 Rev.: 10842


* reintegrates 'help' into 'trunk':
* adds:
- log:branches/help@10647:10841
- log:branches/helptest@10704:10720

99 lines of code changed in 2 files:

  • GDE/CLUSTALW: clustalw.doc (+51 -43), clustalw_help (+48 -35)
westram 2013-02-13 13:24 Rev.: 9575


- effect of [9574] (comments only)

1 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+1 -1)
westram 2011-07-26 10:46 Rev.: 7759


- merge from stable_5.0 [7758]

1 lines of code changed in 1 file:

  • GDE/CLUSTALW: interface.c (+1 -1)
westram 2010-09-18 17:20 Rev.: 6866


* compiler-messages (merges [6848] [6849] [6850] [6851] [6853] [6855] [6856] [6860] from refactor)
- errors get listed before warnings
- pipe all compilations through postcompile filter
- optionally filter warnings and/or stop at 1st error (controllable by POST_COMPILE in ARB Makefile)
- no warnings for ptpan (too many; version in trunk is outdated)

1 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+1 -1)
westram 2009-08-14 16:29 Rev.: 6141


* spellchecked all (phew)

1 lines of code changed in 1 file:

  • GDE/CLUSTALW: clustalw_help (+1 -1)
westram 2009-08-13 12:36 Rev.: 6136


* removed manual hyphenations from original docs

4 lines of code changed in 1 file:

  • GDE/CLUSTALW: clustalw_help (+4 -4)
westram 2009-04-01 17:58 Rev.: 5782


* fixed spelling of 'occurrence'

1 lines of code changed in 1 file:

  • GDE/CLUSTALW: trees.c (+1 -1)
westram 2007-05-30 15:39 Rev.: 4635

- added 'clean'

6 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+6 -1)
westram 2004-01-23 19:08 Rev.: 2338

fixed and reformatted dependencies (using fix_depends.pl)

38 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+38 -16)
westram 2003-08-16 14:30 Rev.: 1755

- fixed for ClustalW v 1.83

18 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+18 -20)
westram 2003-08-16 14:30 Rev.: 1754

updated to version 1.83

2795 lines of code changed in 14 files:

  • GDE/CLUSTALW: README (+20 -1), amenu.c (+22 -1), calctree.c (+5 -9), clustalw.c (+4 -1), clustalw.h (+12 -7), clustalw_help (+35 -4), interface.c (+1697 -1129), makefile.org (+5 -9), pairalign.c (+303 -303), param.h (+21), prfalign.c (+10 -9), readmat.c (-1), sequence.c (+8 -2), trees.c (+653 -1)
westram 2003-08-16 14:29 Rev.: 1753

not in version 1.83

0 lines of code changed in 4 files:

  • GDE/CLUSTALW: coldna.par (del), colprint.par (del), colprot.par (del), phcolor.par (del)
westram 2003-08-09 14:00 Rev.: 1617

- updated dependencies for all Makefiles
- rewrote dependency generation code. Only real changes
propagate into Makefiles - so it does no longer hurt to
call 'make depends' in ARB directory!

43 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+43 -25)
westram 2002-06-20 16:08 Rev.: 655

Mac OSX patches from Ben Hines

6 lines of code changed in 1 file:

  • GDE/CLUSTALW: clustalw.h (+6 -7)
westram 2002-05-29 17:46 Rev.: 597

*** empty log message ***

19 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+19 -21)
yadhu 2002-05-29 11:53 Rev.: 593

makefile dependency generation fixed for GDE

21 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+21 -194)
westram 2002-05-23 09:29 Rev.: 566

Most changes are made due to activating more warnings for the c++ compiler (linux)

48 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+48 -51)
jobb 2001-05-04 11:51 Rev.: 176

*** empty log message ***

20148 lines of code changed in 37 files:

  • GDE/CLUSTALW: Makefile (new 217), README (new 261), alnscore.c (new 114), amenu.c (new 1296), calcgapcoeff.c (new 497), calcprf1.c (new 99), calcprf2.c (new 73), calctree.c (new 988), clustalv.doc (new 1978), clustalw.c (new 119), clustalw.doc (new 758), clustalw.h (new 246), clustalw.ms (new 795), clustalw_help (new 666), coldna.par (new), colprint.par (new), colprot.par (new), dayhoff.h (new 45), gcgcheck.c (new 15), general.h (new 50), globin.pep (new 87), gon90.bla (new 24), interface.c (new 3823), makefile.org (new 38), malign.c (new 654), matrices.h (new 854), matrixseries.gon (new 7), pairalign.c (new 615), param.h (new 362), phcolor.par (new), prfalign.c (new 1131), random.c (new 81), readmat.c (new 477), sequence.c (new 1373), showpair.c (new 486), trees.c (new 1514), util.c (new 405)
jobb 2001-05-04 11:47 Rev.: 175

old version of CLUSTALW removed

0 lines of code changed in 26 files:

  • GDE/CLUSTALW: Makefile (del), alnscore.c (del), amenu.c (del), calcgapcoeff.c (del), calcprf1.c (del), calcprf2.c (del), calctree.c (del), clustalw.c (del), clustalw.h (del), clustalw_help (del), clustalw_help.h (del), dayhoff.h (del), gcgcheck.c (del), general.h (del), interface.c (del), malign.c (del), matrices.h (del), pairalign.c (del), param.h (del), prfalign.c (del), random.c (del), readmat.c (del), sequence.c (del), showpair.c (del), trees.c (del), util.c (del)
jobb 2001-04-27 12:14 Rev.: 164

*** empty log message ***

666 lines of code changed in 1 file:

  • GDE/CLUSTALW: clustalw_help (new 666)
westram 2001-01-11 16:58 Rev.: 83

*** empty log message ***

146 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+146 -226)
meierh 2001-01-11 16:24 Rev.: 80

haralds checkin

226 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+226 -146)
westram 2001-01-04 16:36 Rev.: 68

Updated dependencies

142 lines of code changed in 1 file:

  • GDE/CLUSTALW: Makefile (+142 -16)
oldcode 2000-11-23 11:41 Rev.: 2

Initial revision

15408 lines of code changed in 25 files:

  • GDE/CLUSTALW: Makefile (new 91), alnscore.c (new 114), amenu.c (new 1296), calcgapcoeff.c (new 497), calcprf1.c (new 99), calcprf2.c (new 73), calctree.c (new 988), clustalw.c (new 119), clustalw.h (new 246), clustalw_help.h (new), dayhoff.h (new 45), gcgcheck.c (new 15), general.h (new 50), interface.c (new 3823), malign.c (new 654), matrices.h (new 854), pairalign.c (new 615), param.h (new 362), prfalign.c (new 1131), random.c (new 81), readmat.c (new 477), sequence.c (new 1373), showpair.c (new 486), trees.c (new 1514), util.c (new 405)
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