Directory util/

Directory Created:
2000-11-23 11:41
Total Files:
18
Deleted Files:
14
Lines of Code:
1533

[root]/util

Lines of Code

util/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 249 (100.0%) 2741 (100.0%) 11.0
westram 205 (82.3%) 2167 (79.1%) 10.5
oldcode 22 (8.8%) 468 (17.1%) 21.2
epruesse 12 (4.8%) 101 (3.7%) 8.4
aboeckma 3 (1.2%) 4 (0.1%) 1.3
arb_build 1 (0.4%) 1 (0.0%) 1.0
boehnel 5 (2.0%) 0 (0.0%) 0.0
baderk 1 (0.4%) 0 (0.0%) 0.0

Most Recent Commits

westram 2019-04-03 14:47 Rev.: 17738


* reintegrates 'config' into 'trunk'
* adds: log:branches/config@17733:17737

1 lines of code changed in 1 file:

  • util: jenkins_build.sh (+1 -2)
westram 2019-03-04 20:39 Rev.: 17641


* reintegrates 'mix' into 'trunk'
- improve git/svn interoperability
* adds: log:branches/mix@17637:17640

10 lines of code changed in 1 file:

  • util: arb_srclst.pl (+10 -5)
westram 2018-04-05 12:09 Rev.: 16873


* fix typos ("neither")

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1 -1)
westram 2017-09-21 18:34 Rev.: 16412


* reintegrates 'unittest' into 'trunk'
- limit memory for unittest code to 1Gb (not with sanitizer)
* instantly reveals accidental allocations caused by unsigned underflow
- fix underflows in ACI commands {{{format}}} + {{{format_sequence}}} (allocated 4Gb with certain parameters)
- reactivate sanitizer for builds
* adds: log:branches/unittest@16405:16411

1 lines of code changed in 1 file:

  • util: jenkins_build.sh (+1 -2)
westram 2017-09-20 15:33 Rev.: 16403


- disable SANITIZE

2 lines of code changed in 1 file:

  • util: jenkins_build.sh (+2 -1)
westram 2017-09-18 15:23 Rev.: 16374


* reintegrates 'aci' into 'trunk'
- refactored wide parts of ACI code (incl. SRT+REG)
* added more test
* ACI tracing
- more complete and readable
- automatically turned off when done with expression
* improved error messages (esp. diagnostics)
* documentation (updated, added missing)
* fixed a bunch of bugs (incl. SEGV and deadlock)
* ACI now runs inside execution environment
- ACI language may be extended with custom commands (implements #756)
* added ACI extension for group-batch-rename
* adds:
- log:branches/aci@16170:16373
- log:branches/addtest@16193:16316

1 lines of code changed in 1 file:

  • util: jenkins_build.sh (+1 -1)
westram 2017-09-03 18:48 Rev.: 16264


* allow to force 'clean_before_make'

4 lines of code changed in 1 file:

  • util: jenkins_build.sh (+4)
westram 2017-06-21 14:58 Rev.: 16030


- separate 'clean' and 'build' directly in script

2 lines of code changed in 1 file:

  • util: arb_compile.sh (+2 -1)
westram 2017-04-27 12:09 Rev.: 15822


* partial merge from 'group' into 'trunk' (minor changes)
* adds: log:branches/group@15794,15818

2 lines of code changed in 1 file:

  • util: arb_srclst.pl (+2 -1)
westram 2017-04-21 11:55 Rev.: 15805


* partial merge from 'group' into 'trunk'
- accepts ARB_ERROR in several test macros
- fixes common useless warning from 'savetest'
* adds: log:branches/group@15795,15797

19 lines of code changed in 1 file:

  • util: arb_srclst.pl (+19 -12)
westram 2017-01-16 12:17 Rev.: 15579


* reintegrates 'unittest' into 'trunk'
- activates unittests under OSX (performs #740)
* disabled a few tests + accepted a few modified results (see #741)
* {{{RegExpr}}} no longer uses exception
* fix quoting of {{{char*}}} (in reported test result)
- fixes several compiler flags unknown under OSX/clang
- fix usability of compile log (make now prints directory)
* adds: log:branches/unittest@15534:15578
* removes: [15520/branches/warnings]

48 lines of code changed in 1 file:

  • util: jenkins_build.sh (+48 -62)
westram 2016-05-04 14:25 Rev.: 14808


* allow .patch files in HEADERLIBS
* use INT_MAX instead of numeric_limits

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1)
westram 2015-12-18 12:44 Rev.: 14630


* compile-script:
- allow to configure
* cleanup (before update and build)
* revert (before update)
- use {{{$SHELL}}} instead of hardcoded tcsh

44 lines of code changed in 1 file:

  • util: arb_compile.sh (+44 -4)
westram 2015-10-10 14:28 Rev.: 14411


* fix svn-access URLs
[Note: test-commit to new server from svn+ssh WC]

1 lines of code changed in 1 file:

  • util: arb_compile.sh (+1 -1)
westram 2015-09-28 15:19 Rev.: 14370


* since [14054] updating WC to HEAD _always_ changed ARBDB => always caused _all_ unittests to run again
- instead read revision from generated file ({{{lib/revision_info.txt}}})

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1)
westram 2015-09-18 09:32 Rev.: 14315


* attempt to get rid of perl-locale-spam in build-logs

8 lines of code changed in 1 file:

  • util: jenkins_build.sh (+8)
westram 2015-08-06 13:47 Rev.: 14141


* "ressource" -> "resource"

1 lines of code changed in 1 file:

  • util: jenkins_build.sh (+1 -1)
westram 2015-08-06 10:17 Rev.: 14135


* resource checker
- simplify code for editor button (now resource usage is detected)
- report success
- call on build server

4 lines of code changed in 1 file:

  • util: jenkins_build.sh (+4)
westram 2015-06-12 21:08 Rev.: 13923


* reintegrates '!ProbeMatchCollection' into 'trunk'
- does #479
* adds:
- log:branches/ProbeMatchCollection@13801,13803:13804,13807:13840,13842:13849,13852:13922

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1)
westram 2015-05-30 12:03 Rev.: 13837


- OSX build fails randomly when make is called with '-j 2'[[BR]]
failure excerpt:
{{{
make -C bin all
find . -type l -exec rm {} \;
find . -type l -exec rm {} \;
make scriptlinks mafftlinks
make scriptlinks mafftlinks
ln -s -f `find ../SH -perm -100 ! -type d -print` .
ln -s -f `find ../SH -perm -100 ! -type d -print` .
ln: ./arb: File exists
ln -s -f `find ../PERL_SCRIPTS -perm -100 ! -type d ! -path '*/IFTHELP/*' ! -path '*/TESTS/*' -print` .
make[3]: *** [scriptlinks] Error 1
make[2]: *** [all] Error 2
make[1]: *** [binlink] Error 2
make[1]: *** Waiting for unfinished jobs....
[...]
generate_all_links.sh done.
touch SOURCE_TOOLS/stamp.generate_all_links
make: *** [arb] Error 2
}}}
* {{{make -C bin all}}} only occurs once in log
* target {{{scriptlinks}}} executed twice (bug in make?)

3 lines of code changed in 1 file:

  • util: jenkins_build.sh (+3 -3)
westram 2015-05-27 07:50 Rev.: 13818


- do not use more than 80% of cores
- run at least 2 jobs (on single cores)

1 lines of code changed in 1 file:

  • util: usecores.pl (+1 -1)
westram 2015-05-22 20:00 Rev.: 13816


* merge [13810:13815] from 'pars' into 'trunk'
- jenkins multicore build
* adds:
- log:branches/pars@13811:13815

22 lines of code changed in 2 files:

  • util: jenkins_build.sh (+10 -5), usecores.pl (new 12)
westram 2015-03-26 12:23 Rev.: 13606


* exclude gif generated by [13605] from source-tarball

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1)
westram 2014-11-19 09:13 Rev.: 13204


* +lib/sativa, -bin/sativa
- source-tarball-generation
- svn-ignores

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1 -1)
westram 2014-11-17 16:42 Rev.: 13191


* reintegrates 'slv' into 'trunk'
* performs #624
* adds:
- log:branches/slv@13152:13190

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1)
westram 2014-10-17 14:54 Rev.: 13072


- fix source-tarball generation (sativa)

3 lines of code changed in 1 file:

  • util: arb_srclst.pl (+3)
westram 2014-10-10 12:32 Rev.: 13022


* enable !AddressSanitizer for 4.8.x
- tested with 4.8.0 + 4.8.3
* fix jenkings RELEASE builds (typo)

1 lines of code changed in 1 file:

  • util: jenkins_build.sh (+1 -1)
westram 2014-10-09 19:09 Rev.: 13021


- attempt to run sanitizer on build server

3 lines of code changed in 1 file:

  • util: jenkins_build.sh (+3)
westram 2014-09-17 14:58 Rev.: 12885


* get rid of TEST_open_socket failures under jenkins

1 lines of code changed in 1 file:

  • util: jenkins_build.sh (+1 -1)
westram 2014-08-25 12:30 Rev.: 12767


- pack .svg + .png into source-tarball

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1)
epruesse 2014-08-08 10:44 Rev.: 12719

merge log:branches/stable:12717,12718 to trunk

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1)
westram 2014-08-07 18:40 Rev.: 12710


- skip unwanted files from release tarball (fixes #584)

2 lines of code changed in 1 file:

  • util: arb_compress (+2)
westram 2014-07-17 12:52 Rev.: 12527


use readonly svn url

1 lines of code changed in 1 file:

  • util: arb_compile.sh (+1 -1)
westram 2014-07-16 09:21 Rev.: 12518


* arb_srclst
- remove 'tar.gz' (cannot match)
- remove explicit expressions for some .tgz (now all packed)
- skip 'TAGS.*'
- trace to STDERR + trace extension matching

16 lines of code changed in 1 file:

  • util: arb_srclst.pl (+16 -11)
epruesse 2014-07-16 01:24 Rev.: 12516

srclist doesn't like extensions containing '.' ...

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1 -1)
epruesse 2014-07-16 00:21 Rev.: 12515

I really wonder why only it's only one target (ubuntu 10.04) that
is picky about arb_srclist.pl not knowing how to handle some files.

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1)
epruesse 2014-07-15 20:42 Rev.: 12511

add GDE/RAxML8/builddir to directories not included in src tarball

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1)
westram 2014-06-11 15:34 Rev.: 12415


* fix path to mv_if_diff
* exclude tests.slow from srclst

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1)
westram 2014-05-30 15:02 Rev.: 12326


- build from tarball fails after 'make clean' (test that!)

4 lines of code changed in 1 file:

  • util: jenkins_build.sh (+4)
westram 2014-04-04 18:22 Rev.: 11947


* merge misc changes from 'customize' into 'trunk'
* adds:
- log:branches/customize@11920,11943:11944

1 lines of code changed in 1 file:

  • util: arb_srclst.pl (+1)

(158 more)

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