Directory GDE/MrBAYES/mrbayes_3.2.1/

Lines of Code

Developers

Most Recent Commits

westram 2023-08-11 12:40 Rev.: 19480

* reintegrates 'gde' into 'trunk'
* adds: log:branches/gde@19460:19479

2 lines of code changed in 2 files:

• GDE/MrBAYES/mrbayes_3.2.1: Makefile (-1), sumt.c (+2 -2)

westram 2023-08-05 13:41 Rev.: 19458

* do NOT suppress warnings in MrBAYES => {{{-Werror-implicit-function-declaration}}} now active. No error reported.

1 lines of code changed in 1 file:

• GDE/MrBAYES/mrbayes_3.2.1: Makefile (+1 -1)

westram 2023-08-05 12:46 Rev.: 19447

* suppression of warnings for source-subtrees:
- comment + warn when suppressed (currently suppressed in GDE)

1 lines of code changed in 1 file:

• GDE/MrBAYES/mrbayes_3.2.1: Makefile (+1)

westram 2022-06-17 11:13 Rev.: 19057

* fix linking of !MrBayes with gcc 10 series (duplicated non-static symbols defined in two modules).

8 lines of code changed in 2 files:

• GDE/MrBAYES/mrbayes_3.2.1: command.c (+4 -3), model.c (+4 -3)

westram 2021-09-15 12:48 Rev.: 18729

* eliminate trailing whitespace from Makefiles.

1 lines of code changed in 1 file:

• GDE/MrBAYES/mrbayes_3.2.1: Makefile (+1 -1)

westram 2019-03-04 14:22 Rev.: 17634

* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

1 lines of code changed in 1 file:

• GDE/MrBAYES/mrbayes_3.2.1: .gitignore (new 1)

westram 2015-05-30 13:37 Rev.: 13845

- remove executable flag

0 lines of code changed in 1 file:

• GDE/MrBAYES/mrbayes_3.2.1: gpl.txt (-1)

westram 2014-03-19 13:03 Rev.: 11822

- 32bit compilation passes (fixes #494; native compilation)

0 lines of code changed in 1 file:

• GDE/MrBAYES/mrbayes_3.2.1: config.h (-2)

westram 2014-03-19 13:00 Rev.: 11821

* prepare !MrBayes-32bit compilation
- pass down ARB_64 into submakefiles
- generate dependencies in !MrBayes Makefile (fixes missing dependency from config.h)
- pass ARB_64 and DARWIN to gcc and use them to define flags in config.h:
* ARB_64 -> SSE_ENABLED + _64BIT
* ARB_DARWIN -> MAC_VERSION (UNIX_VERSION otherwise)
* let 32bit-compile fail for now

182 lines of code changed in 2 files:

• GDE/MrBAYES/mrbayes_3.2.1: Makefile (+161 -24), config.h (+21 -2)

westram 2014-01-10 14:01 Rev.: 11461

* get rid of boring warnings in PROBCONS, MrBAYES and FASTTREE

2 lines of code changed in 1 file:

• GDE/MrBAYES/mrbayes_3.2.1: Makefile (+2 -1)

westram 2013-08-23 12:30 Rev.: 10479

* async GDE build
- pass down make flags (esp. -j) into subdirectories
- enclose subbuilds in $(SEP) as in main ARB Makefile (showing enter/exit timestamp for each subdir)
- mafft: build/clean core+extensions async
- mrbayes:
* define proper rules to make target 'mb' work with -j (no idea why that is needed)
* do not clear MAKEFLAGS in caller Makefile
- speedup for 'build' (on 8 cores)
* after GDE clean: 60s -> 30s
* after MrBAYES clean: 44s -> 17s

9 lines of code changed in 1 file:

• GDE/MrBAYES/mrbayes_3.2.1: Makefile (+9 -5)

epruesse 2013-08-07 18:53 Rev.: 10420

- work around linking bug in centos5
- add libreadline-dev to ubuntu depends

8 lines of code changed in 1 file:

• GDE/MrBAYES/mrbayes_3.2.1: Makefile (+8)

epruesse 2013-08-07 14:48 Rev.: 10418

fix !MrBayes makefile (libs need to be in LDLIBS when using implicit rules)

1 lines of code changed in 1 file:

• GDE/MrBAYES/mrbayes_3.2.1: Makefile (+1 -1)

aboeckma 2013-08-07 13:47 Rev.: 10416

Added mr bayes (no menu yet)

114472 lines of code changed in 30 files:

• GDE/MrBAYES/mrbayes_3.2.1: Makefile (new 30), bayes.c (new 1279), bayes.h (new 5), best.c (new 1875), best.h (new 37), command.c (new 15231), command.h (new 25), config.h (new 49), globals.h (new 211), gpl.txt (new 280), mb.c (new 2), mb.h (new 1431), mbbeagle.c (new 1262), mbbeagle.h (new 19), mbmath.c (new 5595), mbmath.h (new 56), mcmc.c (new 45903), mcmc.h (new 94), model.c (new 22464), model.h (new 53), plot.c (new 352), plot.h (new 2), sump.c (new 2874), sump.h (new 38), sumt.c (new 5753), sumt.h (new 9), tree.c (new 7473), tree.h (new 103), utils.c (new 1885), utils.h (new 82)