Directory PROBE_SERVER/TREE_MERGE/

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baderk 2009-03-31 14:52 Rev.: 5780

code cleanup

0 lines of code changed in 2 files:

• PROBE_SERVER/TREE_MERGE: Makefile (del), tree_merge.cxx (del)

westram 2008-12-31 13:27 Rev.: 5709

- made depends for [5708]

2 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: Makefile (+2)

westram 2008-12-31 13:24 Rev.: 5708

* backtrace gets printed to console from
- GB_internal_error
- SIGSEGV (currently GB_login installs the handler using GBK_install_SIGSEGV_handler. Most likely needs to be called manually for some executables)
- GBK_terminate
* added GBK_dump_backtrace, GBK_terminate and GBK_assert_msg
* Default assertion dumps backtrace now
* added -rdynamic and --export-dynamic compiler/linker flags, leaving symbols in code. This raises size of executables by approx. 8%, but we will get meaningful backtraces from users.
* removed old inactive SIGSEGV code
* replaced GB_CORE either by xx_assert() or GBK_terminate()
* removed GBS_do_core (was used conditionally together with GB_CORE)
* disabled crash provoked via arb_panic (using 'core' as savename)
* Linkage changed:
- The future plan is to try some kind of emergency save on open DBs when GBK_terminate or similar is called.
- Since arb_assert calls GBK_terminate this affects ALL applications.
- The drawback is all executables have to be linked vs ARBDB (done with: arb_help2xml and arb_convert_aln, all others already had ARBDB linked)
- Molphy uses #define SIMPLE_ARB_ASSERT before including arb_assert.h
* renamed define GBL_INCLUDED -> ADLOCAL_H
* added arbdb_base.h (defining some types and including ad_k_prot.h, which contains all GBK_*-functions). Intended as minimal and seldom changed interface to libARBDB as needed by arb_assert(), to keep build dependencies low.
* arb_assert.h now automatically includes arbdb_base.h
* trigger compilation of test functions in parsimony via define

0 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: tree_merge.cxx (-1)

westram 2008-12-25 14:03 Rev.: 5675

- removed automatic timestamps (the best they were good for, were vc-conflicts)

0 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: tree_merge.cxx (-1)

baderk 2008-04-16 15:54 Rev.: 5264

Parameter MAXLINELENGTH set to 4k (avoids overflow -- so far).

3 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: tree_merge.cxx (+3 -3)

westram 2008-03-11 20:07 Rev.: 5225

- changed names of linker commands

1 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: Makefile (+1 -1)

westram 2008-02-28 12:18 Rev.: 5129

- depends updated

1 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: Makefile (+1)

westram 2007-05-30 15:34 Rev.: 4634

- proper clean (avoid errors if already cleaned)

2 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: Makefile (+2 -6)

westram 2004-02-13 12:28 Rev.: 2404

- merges all lines (not only different lines)
(even for identical lines "exact matches" need to get summarized)

78 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: tree_merge.cxx (+78 -44)

westram 2004-01-23 19:08 Rev.: 2338

fixed and reformatted dependencies (using fix_depends.pl)

7 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: Makefile (+7 -3)

westram 2003-10-07 11:17 Rev.: 2022

- removed debug output

3 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: tree_merge.cxx (+3 -3)

westram 2003-10-02 18:08 Rev.: 1990

*** empty log message ***

1 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: Makefile (+1 -1)

westram 2003-10-02 17:56 Rev.: 1980

- can handle empty node-info in input trees
- does NOT write empty merged node-info to output tree
- able to "merge" a single tree (it only removes empty node-infos in that case)

37 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: tree_merge.cxx (+37 -14)

westram 2003-10-02 17:53 Rev.: 1974

depends

7 lines of code changed in 1 file:

• PROBE_SERVER/TREE_MERGE: Makefile (+7)

westram 2003-09-29 10:43 Rev.: 1955

- merges several trees saved by arb_probe_group_design

433 lines of code changed in 2 files:

• PROBE_SERVER/TREE_MERGE: Makefile (new 37), tree_merge.cxx (new 396)