[root]/PHYLO
Author | Changes | Lines of Code | Lines per Change |
---|---|---|---|
Totals | 425 (100.0%) | 7448 (100.0%) | 17.5 |
westram | 406 (95.5%) | 4803 (64.5%) | 11.8 |
oldcode | 13 (3.1%) | 2434 (32.7%) | 187.2 |
meierh | 1 (0.2%) | 200 (2.7%) | 200.0 |
epruesse | 2 (0.5%) | 5 (0.1%) | 2.5 |
yadhu | 1 (0.2%) | 4 (0.1%) | 4.0 |
boehnel | 1 (0.2%) | 2 (0.0%) | 2.0 |
baderk | 1 (0.2%) | 0 (0.0%) | 0.0 |
* reintegrates 'ali' into 'trunk'
* adds: log:branches/ali@19183:19205
37 lines of code changed in 4 files:
* remove parameter {{{fallback2default}}} from
- {{{create_selection_list}}}
- {{{create_list}}}
- {{{awt_create_TREE_selection_list}}}
- {{{awt_create_CONFIG_selection_list}}}
- {{{awt_create_SAI_selection_list}}}
* remove some - now unused - locals.
1 lines of code changed in 1 file:
* eliminate unused parameter {{{fallback2default}}} from {{{create_option_menu}}}.
4 lines of code changed in 1 file:
* reintegrates 'progress' into 'trunk'
- implements #789
* adds: log:branches/progress@18885:18958
5 lines of code changed in 1 file:
* full update from child 'fix' into 'trunk'
* adds: log:branches/fix@18339:18351
1 lines of code changed in 1 file:
* full update from child 'fix' into 'trunk'
- fix item name accessors ({{{GBT_get_name}}} + {{{GBT_get_name_or_description}}})
- add {{{null2empty}}}
* adds: log:branches/fix@18140:18158
1 lines of code changed in 1 file:
* partial merge from 'fts' into 'trunk'
- {{{ConfigMapping}}}:
* cleanup
* add missing tests
* fix config bug: trailing backslash at end of values did cause wrong read of data
* adds: log:branches/fts@17718:17723
2 lines of code changed in 1 file:
* partial merge from 'group' into 'trunk'
- fixes to arb_progress
* adds:
- log:branches/group@17191:17218,17220:17260
- log:branches/progress@17195:17216,17218:17259
1 lines of code changed in 1 file:
* partial merge from 'fix' into 'trunk'
- refactored {{{AW_device}}} text output
* reduces calls to strlen (using {{{SizedCstr}}})
* eliminated/modernized several parameters/functions (esp. in {{{TextOverlayCallback}}}s)
* adds: log:branches/fix@16939:16960
3 lines of code changed in 1 file:
* reintegrates 'cleanup' into 'trunk'
- performs #762 (shrink 3.7 k)
* adds: log:branches/cleanup@16924:16935
0 lines of code changed in 1 file:
* reintegrates 'gcc' into 'trunk'
- mostly cosmetics changes
* adds: log:branches/gcc@16655,16741:16743,16752:16765
17 lines of code changed in 4 files:
* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751
48 lines of code changed in 6 files:
* full update from child 'gcc' into 'trunk'
- more warning fixes
- fix bug in prettyprint
* adds: log:branches/gcc@16668:16682
2 lines of code changed in 1 file:
* reintegrates 'vectorize' into 'trunk'
- fixes #700
* documented vectorization-checks
* fine-grained check based on gcc-version
- drops old gcc-versions (<4.4.3)
- new attribute {{{__ATTR__DONT_VECTORIZE}}}
* disabled vectorization of {{{POS_TREE2::init_static()}}} for newer gcc-versions (generated code fails tests)
- added a bunch of new vectorization-checks (probably irrelevant to overall performance)
* adds: log:branches/vectorize@15531:16585,16595:16627
2 lines of code changed in 1 file:
* reintegrates 'fix' into 'trunk'
- adds markerline to load/save-test-DB (bitstring data)
- store encoding in cached bitstring entries (to avoid cache-hit returns wrong encoding; fixes #760)
* adds: log:branches/fix@16072:16076
8 lines of code changed in 1 file:
* replace redundant data {{{AW_font_limits::height}}} with {{{get_height()}}}
3 lines of code changed in 1 file:
* depends for [15253]
3 lines of code changed in 1 file:
* reintegrates 'fixres' into 'trunk'
- fixes #715
* adds: log:branches/fixres@15127:15175
15 lines of code changed in 4 files:
* remove parameter {{{base_gc}}} from {{{AW_manage_GC}}} (always zero)
2 lines of code changed in 1 file:
* merge 2 WINDOW-modifications from 'color' into 'trunk'
* adds: log:branches/color@14929,14940
0 lines of code changed in 1 file:
* use separate GCs for bottom area (changed basename -> 'ARB_PHYLO_BOTTOM') => no longer uses canvas background color in gtk-version
* define lightgrey background for bottom area (workaround problem described in #433)
* change default colors (background, marker)
4 lines of code changed in 1 file:
* DRY phylo display code
19 lines of code changed in 1 file:
* fix wrong {{{base_drag}}}s passed to {{{AW_manage_GC}}} (see [14857])
* use meaningful names for GCs
* headline of bottom-section was not visible in motif-version. fixed.
27 lines of code changed in 3 files:
* no longer pseudo-hide gc-manager-object
- {{{aw_gc_manager}}} -> {{{AW_gc_manager}}}
- use pointers to {{{AW_gc_manager}}} instead of pointer-typedef
13 lines of code changed in 1 file:
* reintegrates 'ui' into 'trunk'
- implements #656
- adds instant update for
* next neighbour search
* branch analysis (mark functions)
* arb-phylo (filter setup)
* adds: log:branches/ui@14588:14621
127 lines of code changed in 6 files:
* reintegrates 'cleanup' into 'trunk'
- eliminates ~10k dead code
* adds: log:branches/cleanup@14598:14603
92 lines of code changed in 9 files:
* change callbacktype used to trigger refresh after GCs changed
- pass what has been changed (font,color only,use of color groups)
* added standard callback ({{{AWT_GC_changed_cb}}})
* {{{AWAR_COLOR_GROUPS_USE}}}
- remove client callback triggering refresh (installed by TREEDISP)
- add general callback calling {{{GcChangedCallback}}} passed to {{{AW_manage_GC}}}
- hide awar inside {{{AW_preset.cxx}}}
* effects:
- EDIT4 does refresh now when toggling use of color groups
- (several) canvases just do "expose" in case of color change (instead of "resize/zoom reset" which is needed for font changes)
18 lines of code changed in 1 file:
* do not cast AW_POPDOWN
1 lines of code changed in 1 file:
* reintegrates 'consensus' into 'trunk'
- fixes #663 (consistent consensus calculation)
- allow to load SAI into existing EDIT4 config
- tweaked "View differences"
- minor fixes for SAI MAX_FREQUENCY
* adds:
- log:branches/addtest@14319:14326
- log:branches/consensus@14276:14424
1 lines of code changed in 1 file:
* sync menu entry 'Frame settings' (and mark motif only where missing)
* merge some gtk-only application code into trunk (not compiled there)
9 lines of code changed in 1 file:
* use one help for all "Colors and fonts"
2 lines of code changed in 1 file:
* add config manager to PHYL filter settings
* minor layout fixes
28 lines of code changed in 3 files:
* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442
1 lines of code changed in 1 file:
* revert [13041:13043]
- instead forbid gcc 4.8.0
2 lines of code changed in 2 files:
* ~~harden patches [13041:13042]~~
- ~~add safebool (=bool for non 4.8.0)~~
- ~~use in all bool-arrays~~
(reverted by [13044])
2 lines of code changed in 2 files:
* unify selectionlist creator names
* awt_create_selection_list_on_pt_servers
- remove param 'popup', instead split into two function (button and list) as done for SAIs
2 lines of code changed in 1 file:
- no magic exit codes
1 lines of code changed in 1 file:
* inlined default param for create_option_menu
4 lines of code changed in 1 file:
* do not use more than 1 parameter in calls to create_option_menu
- 2nd parameter 'label' is dominated by a previous call to label (use direct label calls instead)
- 3rd parameter 'mnemonic' is w/o function in motif and is superfluous in gtk anyway
* reset 'gone_tree_name'
8 lines of code changed in 1 file:
* added 'fallback2default' to awt_create_selection_list_on_sai
* pass false (=disable fallback2default) for
- SAI/Create/Consensus
- SAI/Create/Max. Frequency
- SAI/Create/Positional variability + Column statistic
- ARB_PHYLO/File/Export Filter
- ARB_PHYLO/File/Export Frequencies
* fixes #520
1 lines of code changed in 1 file:
(198 more)