StatSVN - Directory lib/

[root]/lib

BUGS (2 files, 69 lines)

addlibs (1 files, 14 lines)

arb_default (7 files, 694 lines)

desktop (4 files, 21 lines)

dtd (2 files, 92 lines)

export (14 files, 130 lines)

gde (2 files, 28 lines)

icons (0 files, 0 lines)

import (9 files, 680 lines)

nonformats (7 files, 783 lines)

inputMasks (9 files, 343 lines)

macros (8 files, 522 lines)

.checks (3 files, 675 lines)

ARB (0 files, 0 lines)

SEQ_DATA (1 files, 111 lines)

motifHack (3 files, 322 lines)

pixmaps (0 files, 0 lines)

nas (3 files, 18 lines)

pictures (103 files, 3735 lines)

PARS (0 files, 0 lines)

awt (19 files, 599 lines)

awtc (2 files, 47 lines)

consensus (2 files, 368 lines)

cpro (2 files, 72 lines)

demo (0 files, 0 lines)

edit4 (17 files, 839 lines)

etc (0 files, 0 lines)

faligner (3 files, 139 lines)

findcorr (0 files, 0 lines)

merge (12 files, 473 lines)

pars (3 files, 184 lines)

phylo (3 files, 67 lines)

query (5 files, 133 lines)

seer (0 files, 0 lines)

unused (0 files, 0 lines)

demo (0 files, 0 lines)

findcorr (0 files, 0 lines)

window (1 files, 24 lines)

pixmaps (84 files, 3509 lines)

edit (20 files, 602 lines)

unused (0 files, 0 lines)

icons (7 files, 273 lines)

unused (0 files, 0 lines)

merge (1 files, 48 lines)

pgt (0 files, 0 lines)

print (6 files, 239 lines)

unused (0 files, 0 lines)

seer (0 files, 0 lines)

unused (0 files, 0 lines)

protein_2nd_structure (0 files, 0 lines)

rna3d (5 files, 4617 lines)

images (17 files, 0 lines)

sellists (9 files, 100 lines)

submit (3 files, 1061 lines)

Author	Changes	Lines of Code	Lines per Change
Totals	75 (100.0%)	20919 (100.0%)	278.9
westram	60 (80.0%)	12302 (58.8%)	205.0
richter	1 (1.3%)	8474 (40.5%)	8474.0
oldcode	10 (13.3%)	133 (0.6%)	13.3
meierh	1 (1.3%)	7 (0.0%)	7.0
epruesse	2 (2.7%)	3 (0.0%)	1.5
baderk	1 (1.3%)	0 (0.0%)	0.0

Most Recent Commits

westram 2021-09-15 12:48 Rev.: 18729

* eliminate trailing whitespace from Makefiles.

2 lines of code changed in 1 file:

lib: Makefile (+2 -2)

westram 2019-03-04 19:39 Rev.: 17641

* reintegrates 'mix' into 'trunk'
- improve git/svn interoperability
* adds: log:branches/mix@17637:17640

1 lines of code changed in 1 file:

lib: .gitignore (+1)

westram 2019-03-04 14:22 Rev.: 17634

* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

12 lines of code changed in 1 file:

lib: .gitignore (new 12)

westram 2017-01-16 17:16 Rev.: 15587

* reintegrates 'fix' into 'trunk'
- fix OSX unittest for jenkins project names (up to max. 16 chars long)
- optimize {{{GB_log_fak}}}
- forward {{{RegExpr}}}-compile-errors (or at least assert on failure)
* adds: log:branches/fix@15582:15586

2 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+2 -2)

westram 2015-06-12 20:08 Rev.: 13923

* reintegrates '!ProbeMatchCollection' into 'trunk'
- does #479
* adds:
- log:branches/ProbeMatchCollection@13801,13803:13804,13807:13840,13842:13849,13852:13922

12 lines of code changed in 1 file:

lib: probe_match_collection_demo.xpc (new 12)

epruesse 2014-01-30 19:44 Rev.: 11535

remove "RESERVED" keyword from arb_tcp.dat template file

1 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+1 -1)

westram 2013-05-22 10:50 Rev.: 10078

* use sockets in $(ARBHOME)/UNIT_TESTER/sockets
- otherwise running unit-tests in two WCs will interfere

2 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+2 -2)

epruesse 2013-05-21 16:20 Rev.: 10070

use unix socket in /tmp (to allow concurrent unit tests)

2 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+2 -2)

westram 2012-04-17 07:26 Rev.: 8592

* use strict + warnings
* declare variables
* use await_error (get_error fails)

8 lines of code changed in 1 file:

lib: macro.head (+8 -6)

westram 2011-10-07 13:39 Rev.: 8041

merge from dev [7990] [7991] [7992] [7993] [7994] [7995] [7996] [7998] [8001] [8003] [8005] [8006] [8007] [8008] [8009] [8011] [8012] [8019]
* added a faked ecoli to ptserver test-db
* added unit-tests for gene-ptserver
* rename ptserver testdb
* ptserver db-cleanup
- size of mapfile for SSUREF108 is reduced by 85% (3,4Gb -> 519Mb)
* ptserver
- refactored
* prefix tree builders
* probe_input_data
- removed ptnd_new_match (dead code)

1 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+1 -1)

westram 2011-04-29 14:14 Rev.: 7488

* merges [7486] [7487] to trunk

0 lines of code changed in 2 files:

lib: config.Darwin (del), config.Linux (del)

westram 2011-04-13 19:21 Rev.: 7409

merged from dev [7358] [7359] [7360] [7363] [7364] [7365] [7367]
* tweaked build process
- get rid of '.depends: No such file or directory'
- make clean now is much more scrupulous! removal '''notably''' includes lib/pts, lib/nas and lib/arb_tcp.dat (when they are no symlinks)
- suppress some output
- added several unreached targets (to test random failures)
- fine-grained tools-dependencies
- automatically generate target directories (GENC ...)
- removed duplicated target 'mbin' (same as 'comtools')
- added target 'setup_after_clean' (use after 'clean' when doing a partial build)

23 lines of code changed in 1 file:

lib: Makefile (+23 -4)

westram 2011-02-09 16:18 Rev.: 7134

- test whether arb_tcp.dat is a link and then dont overwrite contents
(on some systems 'test -e' returns false for links)

2 lines of code changed in 1 file:

lib: Makefile (+2 -1)

westram 2010-08-23 10:51 Rev.: 6708

* unit tests now also work with object files (not only with libs)
* added unit tests to 'arb_probe.o'
- added a test pt-server to arb_tcp.dat
- start small pt-server (pre-build)
- test one probe match hitting one target
- test one probe design and match designed probe
* time compilation and tests
* minor fixes for patch generation

5 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+5)

westram 2009-10-02 11:04 Rev.: 6216

- use sockets for local PT-servers

11 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+11 -11)

westram 2009-09-02 14:24 Rev.: 6175

* use ~/.arb_pts instead of ~/arb_pts
* create ~/.arb_pts from 'arb'-script

3 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+3 -3)

westram 2009-09-02 14:01 Rev.: 6174

* defined 3 user-local pt-servers (located in ~/arb_pts)

8 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+8 -8)

westram 2009-09-02 13:52 Rev.: 6173

* removed definitions for ARB_TEXTEDIT. it defaults to 'arb_textedit' if undefined, which does some auto-detection (did not work when called via script 'arb')

0 lines of code changed in 2 files:

lib: config.Darwin (-2), config.Linux (-2)

westram 2009-09-02 13:49 Rev.: 6172

* removed environment definitions for unsupported systems

0 lines of code changed in 4 files:

lib: config.HP-UX (del), config.IRIX (del), config.OSF1 (del), config.SunOS (del)

westram 2009-07-29 09:13 Rev.: 6115

* dont call lib/nas Makefile if lib/nas is a link

1 lines of code changed in 1 file:

lib: Makefile (+1)

westram 2009-06-26 08:18 Rev.: 6084

* name servers with add.field have to be started with '-fFIELD=DEFAULT' instead of '-fFIELD' only.
* convert existing nameserver-DBs on the fly
* increased namesDB version to 5
* added a version check (too late - as always)
* nameserver sends fatal errors to running ARB (using arb_message)
* fixed nameserver definitions in arb_tcp_org.dat (arb_tcp.dat needs to be updated manually by users)

3 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+3 -3)

westram 2009-04-24 13:31 Rev.: 5860

- added 2 more examples for nameservers with additional field

4 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+4 -2)

baderk 2008-07-16 16:24 Rev.: 5458

Removed .cvsignore files from repository. Hopefully this time all svn:ignore flags were set right.

0 lines of code changed in 1 file:

lib: .cvsignore (del)

westram 2008-06-06 13:23 Rev.: 5390

- TAB-Ex

56 lines of code changed in 3 files:

lib: GPL.txt (+7 -7), arb_tcp_org.dat (+34 -34), config.SunOS (+15 -15)

westram 2007-06-29 15:12 Rev.: 4669

- added note about '!ASSUME_RUNNING'

3 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+3)

westram 2007-04-18 23:01 Rev.: 4482

- added ARB_TCP_DAT_VERSION
- improved description

13 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+13 -3)

westram 2007-03-29 20:24 Rev.: 4457

- added missing -fstart

2 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+2 -1)

westram 2007-03-09 21:31 Rev.: 4370

- added new nameserver for additional field 'start'

11 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+11 -6)

westram 2006-11-08 18:54 Rev.: 4231

*** empty log message ***

2 lines of code changed in 1 file:

lib: .cvsignore (+2)

westram 2006-11-08 18:54 Rev.: 4230

- fixed test for arb_tcp.dat

1 lines of code changed in 1 file:

lib: Makefile (+1 -1)

westram 2006-11-08 18:54 Rev.: 4229

- List of Validly Published Bacterial Names (upgraded and renamed)

11577 lines of code changed in 3 files:

lib: LoVPBN.readme (new 4), LoVPBN.txt (new 11573), unixnames.txt (del)

westram 2006-10-27 11:44 Rev.: 4225

- old, as the name suggests

0 lines of code changed in 1 file:

lib: arb_tcp_old.dat (del)

westram 2006-10-27 11:41 Rev.: 4224

- ignore 'pts'

1 lines of code changed in 1 file:

lib: .cvsignore (+1)

westram 2006-10-27 11:32 Rev.: 4215

- added changes from arb_tcp.dat

12 lines of code changed in 1 file:

lib: arb_tcp_org.dat (+12 -11)

westram 2006-10-27 11:32 Rev.: 4214

- removed from CVS - now generated if not already present

0 lines of code changed in 1 file:

lib: arb_tcp.dat (del)

westram 2006-10-27 11:32 Rev.: 4213

- removed dead targets
- added target tcpdat (to generate arb_tcp.dat in compile environment)

6 lines of code changed in 1 file:

lib: Makefile (+6 -27)

westram 2004-06-08 14:29 Rev.: 2868

- a copy of the GPL

350 lines of code changed in 1 file:

lib: GPL.txt (new 350)

westram 2003-12-18 14:02 Rev.: 2302

hide ARB.pm

1 lines of code changed in 1 file:

lib: .cvsignore (+1)

westram 2003-12-03 18:26 Rev.: 2257

- added -w

1 lines of code changed in 1 file:

lib: macro.head (+1 -1)

westram 2003-12-03 17:10 Rev.: 2243

removed generated file

0 lines of code changed in 1 file:

lib: ARB.pm (del)

(16 more)

Directory lib/

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Most Recent Commits