Directory lib/

Directory Created:
2000-11-23 11:41
Total Files:
8
Deleted Files:
11
Lines of Code:
12081

[root]/lib
        directory in repo BUGS (2 files, 69 lines)
        directory in repo addlibs (1 files, 14 lines)
        directory in repo arb_default (7 files, 694 lines)
        directory in repo desktop (4 files, 21 lines)
        directory in repo dtd (2 files, 92 lines)
        directory in repo export (14 files, 130 lines)
        directory in repo gde (2 files, 25 lines)
        Folder removed from repo icons (0 files, 0 lines)
        directory in repo import (9 files, 680 lines)
            directory in repo nonformats (7 files, 783 lines)
        directory in repo inputMasks (9 files, 343 lines)
        directory in repo macros (4 files, 126 lines)
            directory in repo .checks (3 files, 675 lines)
            directory in repo ARB (0 files, 0 lines)
                directory in repo SEQ_DATA (1 files, 111 lines)
        directory in repo motifHack (3 files, 322 lines)
            Folder removed from repo pixmaps (0 files, 0 lines)
        directory in repo nas (3 files, 17 lines)
        directory in repo pictures (94 files, 5171 lines)
            Folder removed from repo PARS (0 files, 0 lines)
            directory in repo awt (19 files, 589 lines)
            directory in repo awtc (2 files, 37 lines)
            directory in repo consensus (2 files, 880 lines)
            directory in repo cpro (2 files, 76 lines)
            Folder removed from repo demo (0 files, 0 lines)
            directory in repo edit4 (16 files, 1377 lines)
            Folder removed from repo etc (0 files, 0 lines)
            directory in repo faligner (3 files, 149 lines)
            Folder removed from repo findcorr (0 files, 0 lines)
            directory in repo merge (12 files, 488 lines)
            directory in repo pars (3 files, 177 lines)
            directory in repo phylo (3 files, 60 lines)
            directory in repo query (5 files, 133 lines)
            Folder removed from repo seer (0 files, 0 lines)
            Folder removed from repo unused (0 files, 0 lines)
                Folder removed from repo demo (0 files, 0 lines)
                Folder removed from repo findcorr (0 files, 0 lines)
            directory in repo window (1 files, 30 lines)
        directory in repo pixmaps (84 files, 3509 lines)
            directory in repo edit (20 files, 602 lines)
                Folder removed from repo unused (0 files, 0 lines)
            directory in repo icons (7 files, 273 lines)
                Folder removed from repo unused (0 files, 0 lines)
            directory in repo merge (1 files, 48 lines)
            Folder removed from repo pgt (0 files, 0 lines)
            directory in repo print (6 files, 239 lines)
                Folder removed from repo unused (0 files, 0 lines)
            Folder removed from repo seer (0 files, 0 lines)
            Folder removed from repo unused (0 files, 0 lines)
        Folder removed from repo protein_2nd_structure (0 files, 0 lines)
        directory in repo rna3d (5 files, 4617 lines)
            directory in repo images (22 files, 0 lines)
        directory in repo sellists (9 files, 98 lines)
        directory in repo submit (3 files, 1061 lines)

Lines of Code

lib/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 74 (100.0%) 20917 (100.0%) 282.6
westram 59 (79.7%) 12300 (58.8%) 208.4
richter 1 (1.4%) 8474 (40.5%) 8474.0
oldcode 10 (13.5%) 133 (0.6%) 13.3
meierh 1 (1.4%) 7 (0.0%) 7.0
epruesse 2 (2.7%) 3 (0.0%) 1.5
baderk 1 (1.4%) 0 (0.0%) 0.0

Most Recent Commits

westram 2019-03-04 20:39 Rev.: 17641


* reintegrates 'mix' into 'trunk'
- improve git/svn interoperability
* adds: log:branches/mix@17637:17640

1 lines of code changed in 1 file:

  • lib: .gitignore (+1)
westram 2019-03-04 15:22 Rev.: 17634


* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

12 lines of code changed in 1 file:

  • lib: .gitignore (new 12)
westram 2017-01-16 18:16 Rev.: 15587


* reintegrates 'fix' into 'trunk'
- fix OSX unittest for jenkins project names (up to max. 16 chars long)
- optimize {{{GB_log_fak}}}
- forward {{{RegExpr}}}-compile-errors (or at least assert on failure)
* adds: log:branches/fix@15582:15586

2 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+2 -2)
westram 2015-06-12 21:08 Rev.: 13923


* reintegrates '!ProbeMatchCollection' into 'trunk'
- does #479
* adds:
- log:branches/ProbeMatchCollection@13801,13803:13804,13807:13840,13842:13849,13852:13922

12 lines of code changed in 1 file:

  • lib: probe_match_collection_demo.xpc (new 12)
epruesse 2014-01-30 20:44 Rev.: 11535

remove "RESERVED" keyword from arb_tcp.dat template file

1 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+1 -1)
westram 2013-05-22 11:50 Rev.: 10078


* use sockets in $(ARBHOME)/UNIT_TESTER/sockets
- otherwise running unit-tests in two WCs will interfere

2 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+2 -2)
epruesse 2013-05-21 17:20 Rev.: 10070

use unix socket in /tmp (to allow concurrent unit tests)

2 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+2 -2)
westram 2012-04-17 08:26 Rev.: 8592


* use strict + warnings
* declare variables
* use await_error (get_error fails)

8 lines of code changed in 1 file:

  • lib: macro.head (+8 -6)
westram 2011-10-07 14:39 Rev.: 8041


merge from dev [7990] [7991] [7992] [7993] [7994] [7995] [7996] [7998] [8001] [8003] [8005] [8006] [8007] [8008] [8009] [8011] [8012] [8019]
* added a faked ecoli to ptserver test-db
* added unit-tests for gene-ptserver
* rename ptserver testdb
* ptserver db-cleanup
- size of mapfile for SSUREF108 is reduced by 85% (3,4Gb -> 519Mb)
* ptserver
- refactored
* prefix tree builders
* probe_input_data
- removed ptnd_new_match (dead code)

1 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+1 -1)
westram 2011-04-29 15:14 Rev.: 7488


* merges [7486] [7487] to trunk

0 lines of code changed in 2 files:

  • lib: config.Darwin (del), config.Linux (del)
westram 2011-04-13 20:21 Rev.: 7409


merged from dev [7358] [7359] [7360] [7363] [7364] [7365] [7367]
* tweaked build process
- get rid of '.depends: No such file or directory'
- make clean now is much more scrupulous! removal '''notably''' includes lib/pts, lib/nas and lib/arb_tcp.dat (when they are no symlinks)
- suppress some output
- added several unreached targets (to test random failures)
- fine-grained tools-dependencies
- automatically generate target directories (GENC ...)
- removed duplicated target 'mbin' (same as 'comtools')
- added target 'setup_after_clean' (use after 'clean' when doing a partial build)

23 lines of code changed in 1 file:

  • lib: Makefile (+23 -4)
westram 2011-02-09 17:18 Rev.: 7134


- test whether arb_tcp.dat is a link and then dont overwrite contents
(on some systems 'test -e' returns false for links)

2 lines of code changed in 1 file:

  • lib: Makefile (+2 -1)
westram 2010-08-23 11:51 Rev.: 6708


* unit tests now also work with object files (not only with libs)
* added unit tests to 'arb_probe.o'
- added a test pt-server to arb_tcp.dat
- start small pt-server (pre-build)
- test one probe match hitting one target
- test one probe design and match designed probe
* time compilation and tests
* minor fixes for patch generation

5 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+5)
westram 2009-10-02 12:04 Rev.: 6216


- use sockets for local PT-servers

11 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+11 -11)
westram 2009-09-02 15:24 Rev.: 6175


* use ~/.arb_pts instead of ~/arb_pts
* create ~/.arb_pts from 'arb'-script

3 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+3 -3)
westram 2009-09-02 15:01 Rev.: 6174


* defined 3 user-local pt-servers (located in ~/arb_pts)

8 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+8 -8)
westram 2009-09-02 14:52 Rev.: 6173


* removed definitions for ARB_TEXTEDIT. it defaults to 'arb_textedit' if undefined, which does some auto-detection (did not work when called via script 'arb')

0 lines of code changed in 2 files:

  • lib: config.Darwin (-2), config.Linux (-2)
westram 2009-09-02 14:49 Rev.: 6172


* removed environment definitions for unsupported systems

0 lines of code changed in 4 files:

  • lib: config.HP-UX (del), config.IRIX (del), config.OSF1 (del), config.SunOS (del)
westram 2009-07-29 10:13 Rev.: 6115


* dont call lib/nas Makefile if lib/nas is a link

1 lines of code changed in 1 file:

  • lib: Makefile (+1)
westram 2009-06-26 09:18 Rev.: 6084


* name servers with add.field have to be started with '-fFIELD=DEFAULT' instead of '-fFIELD' only.
* convert existing nameserver-DBs on the fly
* increased namesDB version to 5
* added a version check (too late - as always)
* nameserver sends fatal errors to running ARB (using arb_message)
* fixed nameserver definitions in arb_tcp_org.dat (arb_tcp.dat needs to be updated manually by users)

3 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+3 -3)
westram 2009-04-24 14:31 Rev.: 5860


- added 2 more examples for nameservers with additional field

4 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+4 -2)
baderk 2008-07-16 17:24 Rev.: 5458

Removed .cvsignore files from repository. Hopefully this time all svn:ignore flags were set right.

0 lines of code changed in 1 file:

  • lib: .cvsignore (del)
westram 2008-06-06 14:23 Rev.: 5390

- TAB-Ex

56 lines of code changed in 3 files:

  • lib: GPL.txt (+7 -7), arb_tcp_org.dat (+34 -34), config.SunOS (+15 -15)
westram 2007-06-29 16:12 Rev.: 4669

- added note about '!ASSUME_RUNNING'

3 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+3)
westram 2007-04-19 00:01 Rev.: 4482

- added ARB_TCP_DAT_VERSION
- improved description

13 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+13 -3)
westram 2007-03-29 21:24 Rev.: 4457

- added missing -fstart

2 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+2 -1)
westram 2007-03-09 22:31 Rev.: 4370

- added new nameserver for additional field 'start'

11 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+11 -6)
westram 2006-11-08 19:54 Rev.: 4231

*** empty log message ***

2 lines of code changed in 1 file:

  • lib: .cvsignore (+2)
westram 2006-11-08 19:54 Rev.: 4230

- fixed test for arb_tcp.dat

1 lines of code changed in 1 file:

  • lib: Makefile (+1 -1)
westram 2006-11-08 19:54 Rev.: 4229

- List of Validly Published Bacterial Names (upgraded and renamed)

11577 lines of code changed in 3 files:

  • lib: LoVPBN.readme (new 4), LoVPBN.txt (new 11573), unixnames.txt (del)
westram 2006-10-27 12:44 Rev.: 4225

- old, as the name suggests

0 lines of code changed in 1 file:

  • lib: arb_tcp_old.dat (del)
westram 2006-10-27 12:41 Rev.: 4224

- ignore 'pts'

1 lines of code changed in 1 file:

  • lib: .cvsignore (+1)
westram 2006-10-27 12:32 Rev.: 4215

- added changes from arb_tcp.dat

12 lines of code changed in 1 file:

  • lib: arb_tcp_org.dat (+12 -11)
westram 2006-10-27 12:32 Rev.: 4214

- removed from CVS - now generated if not already present

0 lines of code changed in 1 file:

  • lib: arb_tcp.dat (del)
westram 2006-10-27 12:32 Rev.: 4213

- removed dead targets
- added target tcpdat (to generate arb_tcp.dat in compile environment)

6 lines of code changed in 1 file:

  • lib: Makefile (+6 -27)
westram 2004-06-08 15:29 Rev.: 2868

- a copy of the GPL

350 lines of code changed in 1 file:

  • lib: GPL.txt (new 350)
westram 2003-12-18 15:02 Rev.: 2302

hide ARB.pm

1 lines of code changed in 1 file:

  • lib: .cvsignore (+1)
westram 2003-12-03 19:26 Rev.: 2257

- added -w

1 lines of code changed in 1 file:

  • lib: macro.head (+1 -1)
westram 2003-12-03 18:10 Rev.: 2243

removed generated file

0 lines of code changed in 1 file:

  • lib: ARB.pm (del)
westram 2003-11-21 14:20 Rev.: 2198

- use std path to perl

1 lines of code changed in 1 file:

  • lib: macro.head (+1 -1)

(15 more)

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