Directory SOURCE_TOOLS/

Lines of Code

Developers

Most Recent Commits

westram 2023-08-05 12:50 Rev.: 19449

* shadow-location does appear as warning AND note (depending on gcc version)
- handle both.

67 lines of code changed in 1 file:

• SOURCE_TOOLS: postcompile.pl (+67 -63)

westram 2023-08-05 12:40 Rev.: 19446

* introduce {{{onlyC_flags}}}
- flags used for C compilation only.
- similar to {{{cxxflags}}} (references added).
- pass down onlyC_flags into AxML, CLUSTAL, CLUSTALW, FASTDNAML, FASTTREE, GL, MrBAYES, PHYLIP, PHYML*, RAxML, SINA(unused), SOURCE_TOOLS, SUPPORT, TOOLS, TREEGEN + TREEPUZZLE.
- set flags to {{{-Werror-implicit-function-declaration}}}
* error is only effective in a small part of these modules.
* TODO: need to activate warnings -> will activate the error as well.

2 lines of code changed in 2 files:

• SOURCE_TOOLS: Makefile (+1 -1), export2sub (+1 -1)

westram 2023-08-05 12:27 Rev.: 19443

* fix use of {{{gets()}}} (globally):
- provide a drop-in replacement for {{{gets()}}}
* only requires to specify buffersize.
- use {{{gets_noOverflow()}}} in READSEQ, SUPPORT, CLUSTAL + CLUSTALW.
* adapt {{{getstr()}}}

1 lines of code changed in 1 file:

• SOURCE_TOOLS: generate_all_links.sh (+1)

westram 2023-07-11 10:01 Rev.: 19429

* fix filter for Noncopyable warning (warning message has changed with gcc 10.2.0).

1 lines of code changed in 1 file:

• SOURCE_TOOLS: postcompile.pl (+1 -1)

westram 2022-10-21 15:02 Rev.: 19276

* add class {{{MessageSpamFilter}}}
- helps suppressing too many messages sent via {{{GB_warning()}}}
- forwards suppressed warnings as message (=into logfile via console).
- warns about suppressed messages

1 lines of code changed in 1 file:

• SOURCE_TOOLS: generate_all_links.sh (+1)

westram 2022-09-01 15:19 Rev.: 19245

* reintegrates 'sina' into 'trunk'
- build/deliver sina together with arb
* adds: log:branches/sina@18984:19043,19046:19069,19072:19244

10 lines of code changed in 1 file:

• SOURCE_TOOLS: export2sub (+10)

westram 2022-07-01 13:16 Rev.: 19104

* allow multiple alternative counts of vectorization
- notes:
* count depends on whether functions gets inlined or not.
* specifying explicit counts will check whether ALL instanciations (inlines) of the vectorized code get properly vectorized!

64 lines of code changed in 2 files:

• SOURCE_TOOLS: postcompile.pl (+56 -21), vectorize.README (+8 -3)

westram 2022-06-22 09:25 Rev.: 19073

* fix spelling of nm CLI flag (introduced with r18905)
- failed under OSX
- apparently auto-completed under Linux

1 lines of code changed in 1 file:

• SOURCE_TOOLS: filter_defined_symbols.pl (+1 -1)

westram 2022-06-20 11:08 Rev.: 19062

* improve vectorization-checks:
- allow multiple <count>s (with conditions)
- allow multiple <cond>s (aka "OR operator")
- forbid '*'-count.
- document new condition syntax.

153 lines of code changed in 2 files:

• SOURCE_TOOLS: postcompile.pl (+127 -68), vectorize.README (+26 -16)

westram 2022-06-17 10:25 Rev.: 19053

* support major compiler versions > 9 (for {{{LOOP_VECTORIZED}}}).

7 lines of code changed in 1 file:

• SOURCE_TOOLS: postcompile.pl (+7 -2)

westram 2022-04-06 13:29 Rev.: 18981

* export/use {{{ARB_CORE_LIBS}}} (instead of using {{{ARB_GLIB_LIBS}}} directly).

1 lines of code changed in 1 file:

• SOURCE_TOOLS: export2sub (+1 -1)

westram 2022-03-04 11:26 Rev.: 18959

* reintegrates 'progress' into 'trunk'
- implements #789
* adds: log:branches/progress@18885:18958

6 lines of code changed in 4 files:

• SOURCE_TOOLS: dep.4dummy (+1), dep.alltargets (+1), dep.libtargets (+1), generate_all_links.sh (+3 -1)

westram 2022-02-09 15:31 Rev.: 18933

* detect whether build is running in homebrew
- use {{{HOMEBREW_FAIL_LOG_LINES}}} or 15

14 lines of code changed in 1 file:

• SOURCE_TOOLS: short_error_summary.pl (+14 -2)

westram 2022-02-07 16:20 Rev.: 18921

* remove obsolete targets
- 'release_quick' (relict from old release strategy).
- 'build_CTARGET' and 'reset_committed_build' + related code.

0 lines of code changed in 2 files:

• SOURCE_TOOLS: Makefile.commitbuild (del), rev_check.sh (del)

westram 2022-02-07 15:11 Rev.: 18920

* targets 'all' + 'rebuild' failed to report error since r18917
- fixed by adding 'false' to failing else branch
* remove recursive target 'logwrap_target'
- caused to many extra error lines **after** excerpt - renders the whole idea useless.
* instead
- add separate extracting targets for 'all' + 'rebuild' (ALL + REBUILD)
- store needed code in variables to DRY it
* reduce size of excerpt by 2 lines (which get printed after excerpt in case of failure). change header line.
* add decription for targets ALL + REBUILD

2 lines of code changed in 1 file:

• SOURCE_TOOLS: short_error_summary.pl (+2 -2)

westram 2022-02-04 16:51 Rev.: 18917

* add target 'logwrap_target' (allows to wrap any target).
- wrap targets 'all' + 'rebuild'.
* document possibility for silent builds.
* pass name of logfile to script + refer to log in header.
* reserve space for header line.

8 lines of code changed in 1 file:

• SOURCE_TOOLS: short_error_summary.pl (+8 -2)

westram 2022-02-03 11:48 Rev.: 18916

* filter error-messages from failed {{{make all}}} and dump at bottom
* log of last build remains in {{{build.log}}}

103 lines of code changed in 1 file:

• SOURCE_TOOLS: short_error_summary.pl (new 103)

westram 2022-02-02 12:43 Rev.: 18915

* use uniform variable name 'cmd'.

15 lines of code changed in 3 files:

• SOURCE_TOOLS: profile_annotate.pl (+6 -6), provide_libs.pl (+6 -6), touch_modified.pl (+3 -3)

westram 2022-02-02 12:41 Rev.: 18914

* fix error handling for piped commands in perl
- when forking piped commands
* use error message ($!) instead of exitcode ($?).
* use message 'failed to fork'.
- when closing piped commands
* show IPC errors and exitcode of command.

21 lines of code changed in 10 files:

• SOURCE_TOOLS: arb_compiler_version.pl (+2 -2), build_info.pl (+2 -2), deadcode.pl (+4 -4), filter_defined_symbols.pl (+2 -2), gen_dep.pl (+2 -2), profile_annotate.pl (+2 -2), provide_libs.pl (+2 -2), svn_apply_ignores.pl (+2 -2), svn_undo_depends.pl (+1 -1), touch_modified.pl (+2 -2)

westram 2022-02-02 12:34 Rev.: 18913

* remove .tmp file on script failure (otherwise next build will succeed w/o real success).

1 lines of code changed in 1 file:

• SOURCE_TOOLS: Makefile (+1 -1)

westram 2022-02-01 16:03 Rev.: 18912

* target 'patch' always patches versus svn.

12 lines of code changed in 1 file:

• SOURCE_TOOLS: arb_create_patch.sh (+12 -2)

westram 2022-01-29 14:33 Rev.: 18907

* partial merge from 'stable' into 'trunk'
* adds: log:branches/stable@18903:18906

108 lines of code changed in 1 file:

• SOURCE_TOOLS: filter_defined_symbols.pl (new 108)

westram 2021-12-17 15:30 Rev.: 18862

* increase x-size of dependency graphs.

3 lines of code changed in 1 file:

• SOURCE_TOOLS: needed_libs.pl (+3 -2)

westram 2021-11-14 12:18 Rev.: 18842

* allow conditional build of OPENMP version of {{{FastTree}}}
- tweak preprocessor: allow to {{{#define}}} via CLI.
- globally define whether OPENMP shall be used
* export to submakefiles.
* disable under OSX
- capability to build OPENMP binary depends on compiler
- LLVM/Clang 3.7 required
- forward {{{USE_OPENMP}}} into preprocessor.
- in fasttree.menu: when not defined {{{USE_OPENMP}}} -> skip MP option from GUI + hardcode binary.
- conditionally build OPENMP binary depending on {{{USE_OPENMP}}}.

3 lines of code changed in 1 file:

• SOURCE_TOOLS: export2sub (+3)

westram 2021-10-10 08:33 Rev.: 18781

* reintegrates 'help' into 'trunk'
- relocate help sources
* adds: log:branches/help@18763:18780

41 lines of code changed in 2 files:

• SOURCE_TOOLS: check_resources.pl (+22 -6), diff2grep.pl (+19 -7)

westram 2021-09-15 12:48 Rev.: 18729

* eliminate trailing whitespace from Makefiles.

1 lines of code changed in 1 file:

• SOURCE_TOOLS: Makefile (+1 -1)

westram 2021-09-15 12:31 Rev.: 18723

* remove .c rules.
* add .c suffix (in SOURCE_TOOLS).

1 lines of code changed in 1 file:

• SOURCE_TOOLS: Makefile (+1 -1)

westram 2021-09-07 09:37 Rev.: 18704

* reintegrates 'tree' into 'trunk'
* adds: log:branches/tree@18666:18703

1 lines of code changed in 1 file:

• SOURCE_TOOLS: generate_all_links.sh (+1)

westram 2021-08-26 17:21 Rev.: 18690

* increment trunk version to 7.1

2 lines of code changed in 1 file:

• SOURCE_TOOLS: version_info (+2 -2)

westram 2021-08-26 16:37 Rev.: 18683

* increase arb version to 7.0

3 lines of code changed in 1 file:

• SOURCE_TOOLS: version_info (+3 -3)

westram 2021-05-07 12:43 Rev.: 18645

* ignore leak checks in intentionally crashing unittests
- fixes build with sanitizer + unittests

5 lines of code changed in 1 file:

• SOURCE_TOOLS: arb.leaksan.supp (+5)

westram 2021-02-01 15:42 Rev.: 18640

* move {{{mod_rlimit.h}}} to allow usage in production code.

1 lines of code changed in 1 file:

• SOURCE_TOOLS: generate_all_links.sh (+1)

westram 2020-11-10 16:24 Rev.: 18634

* reintegrates 'root' into 'trunk'
- implements #449
* adds: log:branches/root@18451:18633

3 lines of code changed in 1 file:

• SOURCE_TOOLS: generate_all_links.sh (+3)

westram 2020-04-06 14:18 Rev.: 18437

* reintegrates 'io' into 'trunk'
* adds: log:branches/io@18428:18436

1 lines of code changed in 1 file:

• SOURCE_TOOLS: dep.alltargets (+1)

westram 2020-04-01 16:21 Rev.: 18426

* reintegrates 'unittest' into 'trunk'
* adds: log:branches/unittest@18363:18425

4 lines of code changed in 4 files:

• SOURCE_TOOLS: dep.4dummy (+1), dep.alltargets (+2), dep.libtargets (+1), export2sub (-1)

westram 2020-03-03 12:23 Rev.: 18352

* full update from child 'fix' into 'trunk'
* adds: log:branches/fix@18339:18351

0 lines of code changed in 1 file:

• SOURCE_TOOLS: generate_all_links.sh (-1)

westram 2020-03-02 18:16 Rev.: 18342

* improve errors shown when trying to build while no gcc is installed.
* add 'patch' to required build tools.
* updated list of compile requirements according to SUSE leap 15.1

4 lines of code changed in 1 file:

• SOURCE_TOOLS: arb_compiler_version.pl (+4 -2)

westram 2020-02-21 13:07 Rev.: 18311

* reintegrates 'saicalc' into 'trunk'
- implements #730
* adds: log:branches/saicalc@18141:18310

8 lines of code changed in 5 files:

• SOURCE_TOOLS: arb_cleanup_patches.pl (+3 -3), dep.4dummy (+2 -1), dep.alltargets (+1), dep.libtargets (+1), generate_all_links.sh (+1)

westram 2019-10-10 18:16 Rev.: 18168

* full update from child 'fix' into 'trunk'
* adds: log:branches/fix@18159:18167

261 lines of code changed in 1 file:

• SOURCE_TOOLS: sortfig.pl (new 261)

westram 2019-09-20 16:08 Rev.: 18113

* reintegrates 'cleanup' into 'trunk'
* adds: log:branches/cleanup@18105:18112

1 lines of code changed in 1 file:

• SOURCE_TOOLS: generate_all_links.sh (+1)

(568 more)