Directory SL/GUI_ALIVIEW/

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westram 2023-07-11 11:38 Rev.: 19432

* {{{GBT_get_alignment_len}}}
- now also reports error if alignment length is zero
* this case often was unhandled and did easily lead to allocation problems.
- catch error in case of zero alignment length => fixes alloc-size-larger-than-warning (in {{{NT_count_different_chars}}}).
- check + fix callers.

5 lines of code changed in 2 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+1 -1), ColumnStat.cxx (+4 -1)

westram 2023-06-15 14:31 Rev.: 19393

* reintegrates 'ali' into 'trunk'
- refactored misused enum
- support for helix pairs:
* drop non-standard defs
* add more user defs
- change defaults
- add several predefined configs (esp. for IUPAC ambiguity codes)
* adds: log:branches/ali@19376:19392

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+1 -1)

westram 2022-11-13 15:47 Rev.: 19339

* reintegrates 'refactor' into 'trunk'
- eliminates old interface of {{{GBS_strstruct}}}
- add a few new unittests (editor-config string + some PT-SERVER-functions)
* adds: log:branches/refactor@19300:19338

23 lines of code changed in 2 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+17 -18), ColumnStat.cxx (+6 -6)

westram 2022-08-03 14:52 Rev.: 19206

* reintegrates 'ali' into 'trunk'
* adds: log:branches/ali@19183:19205

4 lines of code changed in 2 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+3 -1), ColumnStat.cxx (+1 -1)

westram 2022-03-04 15:20 Rev.: 18964

* remove parameter {{{fallback2default}}} from
- {{{create_selection_list}}}
- {{{create_list}}}
- {{{awt_create_TREE_selection_list}}}
- {{{awt_create_CONFIG_selection_list}}}
- {{{awt_create_SAI_selection_list}}}
* remove some - now unused - locals.

2 lines of code changed in 2 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+1 -1), ColumnStat.cxx (+1 -1)

westram 2022-03-04 15:13 Rev.: 18962

* eliminate unused parameter {{{fallback2default}}} from {{{create_option_menu}}}.

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+1 -1)

westram 2022-03-04 11:26 Rev.: 18959

* reintegrates 'progress' into 'trunk'
- implements #789
* adds: log:branches/progress@18885:18958

2 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: Makefile (+2)

westram 2021-09-15 12:52 Rev.: 18730

* remove trailing whitespace from c source.

2 lines of code changed in 2 files:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+1 -1), ColumnStat.hxx (+1 -1)

westram 2021-09-15 12:37 Rev.: 18724

* directly use {{{OBJECTS}}}.

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: Makefile (+1 -2)

westram 2021-09-15 12:31 Rev.: 18723

* remove .c rules.
* add .c suffix (in SOURCE_TOOLS).

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: Makefile (+1 -4)

westram 2021-09-15 12:00 Rev.: 18720

* select units using {{{wildcard}}}.

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: Makefile (+1 -5)

westram 2021-09-15 11:53 Rev.: 18718

* eliminate unused {{{C_OBJECTS}}}.

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: Makefile (+1 -2)

westram 2021-08-17 14:15 Rev.: 18665

* change many WARN_TODO triggered warnings into todo markers.

2 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: GUI_aliview.cxx (+2 -3)

westram 2019-10-08 16:51 Rev.: 18159

* full update from child 'fix' into 'trunk'
- fix item name accessors ({{{GBT_get_name}}} + {{{GBT_get_name_or_description}}})
- add {{{null2empty}}}
* adds: log:branches/fix@18140:18158

3 lines of code changed in 2 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+2 -1), ColumnStat.cxx (+1 -1)

westram 2019-07-02 13:36 Rev.: 17943

* fix {{{ColumnStat}}}-ctor (still used memset to init whole object)\\=> fixes sanitizer abort when running arb_parsimony

20 lines of code changed in 3 files:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+17 -5), ColumnStat.hxx (+2 -2), Makefile (+1)

westram 2018-07-10 15:48 Rev.: 17178

* reintegrates 'gcc' into 'trunk'
- complete arb port to gcc 8.1
- fixes NDEBUG-related issues (not handled by [16986])
* adds: log:branches/gcc@17164:17177

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+1 -1)

westram 2018-04-11 15:48 Rev.: 16880

* reintegrates 'multicore' into 'trunk'
- derive sequence classes able to be combined from new class {{{AP_combinableSeq}}}
* elim dummy functions from rest of hierarchy
- implements non-writing combine for add-species (speedup: 25-35%)
- introduce type {{{Mutations}}} => uses long everywhere (before mostly, but not always used float)
- allows use of {{{future}}}s
* nucleotide combine is able to calculate async (disabled via define atm -> {{{NEVER_COMBINE_ASYNC}}}; needs more work on calling algorithm)
* adds: log:branches/multicore@16769:16879

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+1 -1)

westram 2017-11-28 18:22 Rev.: 16766

* reintegrates 'gcc' into 'trunk'
- mostly cosmetics changes
* adds: log:branches/gcc@16655,16741:16743,16752:16765

2 lines of code changed in 2 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+1 -2), ColumnStat.cxx (+1 -1)

westram 2017-11-28 17:09 Rev.: 16763

* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751

48 lines of code changed in 4 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+18 -15), ColumnStat.cxx (+22 -21), ColumnStat.hxx (+1 -1), GUI_aliview.cxx (+7 -7)

westram 2017-11-06 13:54 Rev.: 16628

* reintegrates 'vectorize' into 'trunk'
- fixes #700
* documented vectorization-checks
* fine-grained check based on gcc-version
- drops old gcc-versions (<4.4.3)
- new attribute {{{__ATTR__DONT_VECTORIZE}}}
* disabled vectorization of {{{POS_TREE2::init_static()}}} for newer gcc-versions (generated code fails tests)
- added a bunch of new vectorization-checks (probably irrelevant to overall performance)
* adds: log:branches/vectorize@15531:16585,16595:16627

2 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+2 -2)

westram 2017-09-18 14:23 Rev.: 16374

* reintegrates 'aci' into 'trunk'
- refactored wide parts of ACI code (incl. SRT+REG)
* added more test
* ACI tracing
- more complete and readable
- automatically turned off when done with expression
* improved error messages (esp. diagnostics)
* documentation (updated, added missing)
* fixed a bunch of bugs (incl. SEGV and deadlock)
* ACI now runs inside execution environment
- ACI language may be extended with custom commands (implements #756)
* added ACI extension for group-batch-rename
* adds:
- log:branches/aci@16170:16373
- log:branches/addtest@16193:16316

25 lines of code changed in 2 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+16 -16), ColumnStat.cxx (+9 -9)

westram 2016-08-11 10:05 Rev.: 15176

* reintegrates 'fixres' into 'trunk'
- fixes #715
* adds: log:branches/fixres@15127:15175

6 lines of code changed in 2 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+4 -3), Makefile (+2)

westram 2016-04-16 13:52 Rev.: 14731

* mark code binding callbacks to non-button-widgets (probably incomplete; see #559 for details)

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+1 -1)

westram 2015-11-05 11:35 Rev.: 14474

* use typed callbacks for SAI-selectionbox-filter

3 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+3 -5)

westram 2015-11-04 10:43 Rev.: 14457

* few more callback fixes

3 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+3 -4)

westram 2015-11-04 09:57 Rev.: 14453

* do not cast AW_POPDOWN

4 lines of code changed in 2 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+2 -1), ColumnStat.cxx (+2 -1)

westram 2015-07-31 15:15 Rev.: 14118

* added {{{awt_create_filter_awars}}}
- made all awars 'tmp' (saving them did not work)

43 lines of code changed in 3 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+37 -7), Makefile (+2), awt_filter.hxx (+4 -4)

westram 2015-07-31 13:30 Rev.: 14117

* add missing check for filter validity

3 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+3 -2)

westram 2015-01-23 14:19 Rev.: 13443

* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

2 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: Makefile (+2 -2)

westram 2014-08-26 11:38 Rev.: 12774

* directly call refresh on AW_DB_selection to update weights selection for !ColumnStat

8 lines of code changed in 3 files:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+5 -5), ColumnStat.hxx (+1 -1), Makefile (+2)

westram 2014-08-26 11:27 Rev.: 12772

* use base AW_DB_selection where sufficient

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: ColumnStat.hxx (+1 -1)

westram 2014-08-14 11:18 Rev.: 12757

* unify selectionlist creator names
* awt_create_selection_list_on_pt_servers
- remove param 'popup', instead split into two function (button and list) as done for SAIs

2 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+2 -2)

westram 2014-05-12 14:22 Rev.: 12205

* inlined default param for create_option_menu

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+1 -1)

westram 2014-05-09 16:23 Rev.: 12189

* added 'fallback2default' to awt_create_selection_list_on_sai
* pass false (=disable fallback2default) for
- SAI/Create/Consensus
- SAI/Create/Max. Frequency
- SAI/Create/Positional variability + Column statistic
- ARB_PHYLO/File/Export Filter
- ARB_PHYLO/File/Export Frequencies
* fixes #520

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+1 -1)

westram 2014-05-09 14:43 Rev.: 12186

* AW_window::create_selection_list expects new parameter 'fallback2default'
- change calls outside WINDOW (pass 'true' everywhere, which previous default behavior in gtk)

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+1 -1)

westram 2014-04-30 13:36 Rev.: 12138

* reintegrates 'fix' into 'trunk'
- fixes #522
* adds:
- log:branches/fix@12058:12137

31 lines of code changed in 3 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+17 -4), GUI_aliview.cxx (+11 -7), awt_filter.hxx (+3 -1)

westram 2014-04-17 12:31 Rev.: 12054

* reintegrates 'fix' into 'trunk'
- fixes #521
* adds:
- log:branches/fix@12049:12053

20 lines of code changed in 2 files:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+14 -11), ColumnStat.hxx (+6 -1)

westram 2014-04-16 15:13 Rev.: 12043

* reintegrates 'fix' into 'trunk' (fixes #519)
- this patch wasn't really straightforward, instead each change caused new unexpected side effects. It's quite likely that i didn't detect all of them.
* adds:
- log:branches/fix@12023,12027:12042

171 lines of code changed in 5 files:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+138 -120), ColumnStat.hxx (+1 -1), GUI_aliview.cxx (+28 -11), Makefile (+2), gui_aliview.hxx (+2 -2)

westram 2014-01-10 19:16 Rev.: 11464

- un-dummy-fied transaction (renames only)

1 lines of code changed in 1 file:

• SL/GUI_ALIVIEW: ColumnStat.cxx (+1 -1)

westram 2013-11-29 09:32 Rev.: 11261

* use awt_create_select_filter_win() as typed callback
* removed superfluous struct keyword
* renamed some variables ('cd'-ex)

10 lines of code changed in 2 files:

• SL/GUI_ALIVIEW: AWT_filter.cxx (+9 -12), awt_filter.hxx (+1 -1)

(57 more)