Directory lib/pictures/

Directory Created:
2000-11-23 10:41
Total Files:
102
Deleted Files:
45
Lines of Code:
3713

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Lines of Code

lib/pictures/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 550 (100.0%) 15094 (100.0%) 27.4
westram 410 (74.5%) 8600 (57.0%) 20.9
yadhu 50 (9.1%) 3281 (21.7%) 65.6
oldcode 68 (12.4%) 2685 (17.8%) 39.4
huberj 6 (1.1%) 220 (1.5%) 36.6
baderk 7 (1.3%) 132 (0.9%) 18.8
foerster 3 (0.5%) 128 (0.8%) 42.6
richter 2 (0.4%) 26 (0.2%) 13.0
epruesse 1 (0.2%) 14 (0.1%) 14.0
spanfeln 3 (0.5%) 8 (0.1%) 2.6

Most Recent Commits

westram 2021-10-08 15:07 Rev.: 18760


* change layout of 'Color Translation Table' properties window (make space for HELP button).
* add help button (fixes #326)
* change documentation of 'Define Color Translations'.

7 lines of code changed in 1 file:

  • lib/pictures: probeSaiColors.fig (+7 -6)
westram 2021-09-02 08:46 Rev.: 18697


* full update from child 'stable' into 'trunk'
- merge changes done to arb-7.0 release candidate
* adds: log:branches/stable@18690:18695

14 lines of code changed in 1 file:

  • lib/pictures: arb_intro.fig (+14 -17)
westram 2020-11-10 16:24 Rev.: 18634


* reintegrates 'root' into 'trunk'
- implements #449
* adds: log:branches/root@18451:18633

25 lines of code changed in 1 file:

  • lib/pictures: syncroot.fig (new 25)
westram 2020-05-14 18:21 Rev.: 18463


* reintegrates 'top' into 'trunk'
* adds: log:branches/top@18453:18462

25 lines of code changed in 1 file:

  • lib/pictures: ad_ext.fig (+25 -22)
westram 2020-02-21 13:07 Rev.: 18311


* reintegrates 'saicalc' into 'trunk'
- implements #730
* adds: log:branches/saicalc@18141:18310

129 lines of code changed in 5 files:

  • lib/pictures: saiaci.fig (new 18), saicalc.fig (new 37), saichain.fig (new 34), saimatrix.fig (new 24), saitrans.fig (new 16)
westram 2019-10-28 17:23 Rev.: 18186


* reintegrates 'fts' into 'trunk'
* adds: log:branches/fts@18177:18185

12 lines of code changed in 1 file:

  • lib/pictures: fts_ruledef.fig (+12 -12)
westram 2019-10-10 18:16 Rev.: 18168


* full update from child 'fix' into 'trunk'
* adds: log:branches/fix@18159:18167

1970 lines of code changed in 96 files:

  • lib/pictures: RNA3D_ChangeMolecule.fig (+1 -180), RNA3D_DisplayBases.fig (+31 -224), RNA3D_DisplayHelices.fig (+23 -208), RNA3D_DisplayOptions.fig (+21 -214), RNA3D_SeqMapping.fig (+41 -234), ad_align.fig (+17 -17), ad_branch.fig (+26 -32), ad_cons_tree.fig (+8 -8), ad_conv.fig (+5 -5), ad_delof.fig (+5 -5), ad_ext.fig (+12 -12), ad_ext_group.fig (+5 -5), ad_fcrea.fig (+15 -8), ad_gen_create.fig (+28 -36), ad_kreo.fig (+12 -16), ad_one_tree.fig (+1 -1), ad_query.fig (+38 -56), ad_selManNam.fig (+5 -5), ad_spec.fig (+9 -9), ad_spec_nn.fig (+23 -23), ad_spec_nnm.fig (+32 -34), ad_tree.fig (+26 -28), arb_intro.fig (+35 -49), calltexe.fig (+23 -15), chimera_check.fig (+28 -30), compare_taxonomy.fig (+12 -12), compare_topo.fig (+13 -21), concatenate.fig (+11 -11), dbbrowser.fig (+20 -22), di_cancel.fig (+30 -27), di_clusters.fig (+19 -19), di_ge_ma.fig (+54 -56), displayField.fig (+6 -185), ed_al_ex.fig (+29 -22), ed_al_sp.fig (+86 -81), ed_key.fig (+15 -23), fileselect.fig (+8 -8), fts_ruledef.fig (+23 -23), fts_select.fig (+12 -14), gde3item.fig (+24 -24), gdeitem.fig (+23 -25), gdeitem_simple.fig (+9 -13), gen_options.fig (+37 -59), group_search.fig (+65 -67), group_trees.fig (+5 -5), help.fig (+6 -6), insdel.fig (+4 -4), insdel_sai.fig (+16 -16), item_shader_cfg.fig (+30 -38), iupac.fig (+25 -25), join_species.fig (+6 -6), load_box.fig (+15 -17), macro_select.fig (+19 -23), mark_configs.fig (+6 -6), merge_species.fig (+11 -15), message.fig (+9 -11), move_groups.fig (+44 -56), mp_results.fig (+25 -29), multiprobe.fig (+38 -46), nt_selection.fig (+23 -27), nt_sort.fig (+14 -18), optimize.fig (+4 -4), pd_admin.fig (+16 -16), pd_main.fig (+37 -39), pd_match.fig (+35 -37), pd_match_iupac.fig (+15 -19), pd_match_probe_collection.fig (+53 -57), pd_match_with_specificity.fig (+19 -21), pd_reslt.fig (+1 -1), pd_spec.fig (+23 -23), pm_spec.fig (+39 -43), prd_main.fig (+54 -72), probeSaiColors.fig (+26 -28), proteinViewer.fig (+97 -137), realign_dna.fig (+10 -10), saiColorRange.fig (+26 -30), save_as.fig (+20 -22), sec_bonddef.fig (+1 -1), sec_display.fig (+11 -11), sec_imexport.fig (+32 -25), sel_box.fig (+7 -7), sel_box_nds.fig (+9 -9), sel_box_tree.fig (+9 -9), sel_box_user.fig (+11 -11), select_simple.fig (+1 -1), seq_quality.fig (+36 -217), sl_l_box.fig (+7 -7), sl_s_box.fig (+8 -8), stat_main.fig (+17 -10), status.fig (+10 -12), submiss.fig (+13 -13), syncscroll.fig (+5 -5), trackali.fig (+6 -6), transpro.fig (+11 -11), tree_export.fig (+17 -21), visualizeSAI.fig (+22 -205)
westram 2019-09-17 14:46 Rev.: 18092


* full update from child 'fts' into 'trunk'
- implements #562
* adds:
- [18091/branches/fts]
- log:branches/gui@17754:17924,17926:18090

79 lines of code changed in 2 files:

  • lib/pictures: fts_ruledef.fig (new 46), fts_select.fig (new 33)
westram 2018-10-31 09:52 Rev.: 17593


* reintegrates 'fix' into 'trunk'
- performs #798
* adds genetic code tables (24-31)
* adds combined amino acid J (I or L)
* improved translate and/or realign
- handle optional start-/stop-codons
- improve recognition of nuc-triples containing IUPAC-codes
* error messages now always list EMBL table numbers
* adds:
- log:branches/fix@17480:17485,17491:17492,17494:17507,17509:17528,17534:17592
- log:branches/optional@17481:17568

1 lines of code changed in 1 file:

  • lib/pictures: iupac.fig (+1 -1)
westram 2018-09-03 13:02 Rev.: 17350


* GUI cosmetic

7 lines of code changed in 1 file:

  • lib/pictures: move_groups.fig (+7 -5)
westram 2018-08-30 16:24 Rev.: 17342


* reintegrates 'group' into 'trunk'
- implements #780
* adds: log:branches/group@17162:17190,17261:17341

101 lines of code changed in 3 files:

  • lib/pictures: ad_two_trees.fig (del), compare_topo.fig (new 32), move_groups.fig (new 69)
westram 2018-07-06 15:02 Rev.: 17160


* reintegrates 'group' into 'trunk'
- misc. cleanup:
* group related functions now all accessible via menu of 1st ntree window
* DRY selection of 2 trees
* warn if annotated tree isnt visible
* fix mnemonics
* fix error handling (compare taxonomy)
* unittest comments added to tree remarks
* names
* adds: log:branches/group@17139:17159

24 lines of code changed in 2 files:

  • lib/pictures: ad_tree.fig (+13 -15), compare_taxonomy.fig (+11 -7)
westram 2017-10-27 18:04 Rev.: 16576


* painful merge from 'alilink' into 'trunk'
- attempt to eliminate existing conflicts by merging log:branches/alilink@12782,12786:12787 (=creation of conflicting files)
- also merged back already resolved conflicts (done in alilink)
- a dozen of manual merges :-(
* adds: log:branches/alilink@12782,12786:12787,13999,14004

31 lines of code changed in 2 files:

  • lib/pictures: realign_dna.fig (new 31), transdna.fig (del)
westram 2017-10-08 14:54 Rev.: 16508


* reintegrates 'macros' into 'trunk'
- introduce generic input prompt (related #179)
- use it instead of locally generated windows:
* species (rename + create)
* alignment (rename, copy + create)
* experiments (rename, copy + create)
* genes (rename, copy + extract)
* mergetool (rename SAI + configs)
* SAIviz color translation (copy + create)
- fixed bugs in mergetool ([16503],[16504])
* adds: log:branches/macros@16484:16507

0 lines of code changed in 1 file:

  • lib/pictures: ad_al_si.fig (del)
westram 2017-09-19 13:40 Rev.: 16391


* full update from child 'aci' into 'trunk'
- allow to view console from inside ARB
- slightly tweaked ACI trace
* adds: log:branches/aci@16386:16390

6 lines of code changed in 1 file:

  • lib/pictures: pd_admin.fig (+6 -4)
westram 2017-09-02 11:54 Rev.: 16259


* show build date in intro window

43 lines of code changed in 1 file:

  • lib/pictures: arb_intro.fig (+43 -35)
westram 2017-06-02 10:17 Rev.: 15982


* full update from child 'fix' into 'trunk'
- fixes #478
* adds: log:branches/fix@15976:15981

16 lines of code changed in 1 file:

  • lib/pictures: ad_spec.fig (+16 -15)
westram 2017-05-21 16:59 Rev.: 15966


* reintegrates 'group' into 'trunk'
- implements #652 (group search)
* adds: log:branches/group@15733:15740,15743:15748,15750:15752,15754,15756,15758:15777,15781:15793,15796,15798:15806,15808:15817,15819:15965

106 lines of code changed in 2 files:

  • lib/pictures: group_search.fig (new 83), group_trees.fig (new 23)
westram 2016-10-15 10:53 Rev.: 15340


* reintegrates 'sync' into 'trunk'
- implements #683
* adds: log:branches/sync@15291,15301:15312,15315:15318,15320:15329,15331:15339

20 lines of code changed in 1 file:

  • lib/pictures: syncscroll.fig (new 20)
westram 2016-07-14 14:15 Rev.: 15054


* reintegrates 'color' into 'trunk'
- implements #443 (+parts of #444)
* adds: log:branches/color@14920:14921,14923:14928,14930:14939,14941:14951,14954:14956,14958:14959,14961:14964,14968,14970:14981,14985,14988,14990:14992,14994:14999,15001:15004,15007,15009,15012:15026,15028:15035,15037:15039,15041:15053

57 lines of code changed in 1 file:

  • lib/pictures: item_shader_cfg.fig (new 57)
westram 2016-04-29 17:02 Rev.: 14786


* reintegrates 'gde' into 'trunk'
- fixes #695
* adds: log:branches/gde@14670:14675,14682:14785

96 lines of code changed in 7 files:

  • lib/pictures: ad_conv.fig (+8 -8), ad_spec_nnm.fig (+10 -10), chimera_check.fig (+14 -12), compare_taxonomy.fig (+18 -24), join_species.fig (+16 -19), merge_species.fig (+15 -11), nt_sort.fig (+15 -16)
westram 2016-04-15 09:22 Rev.: 14729


* remove obsolete probe-group-interface
- also eliminates one unwanted selection-list-callback

0 lines of code changed in 1 file:

  • lib/pictures: pg_select.fig (del)
westram 2016-03-15 13:53 Rev.: 14696


* add missing 'help' label to xfig (fixes #693)
* minor layout fixes

16 lines of code changed in 1 file:

  • lib/pictures: sel_box_tree.fig (+16 -16)
westram 2015-12-16 15:13 Rev.: 14622


* reintegrates 'ui' into 'trunk'
- implements #656
- adds instant update for
* next neighbour search
* branch analysis (mark functions)
* arb-phylo (filter setup)
* adds: log:branches/ui@14588:14621

68 lines of code changed in 3 files:

  • lib/pictures: ad_branch.fig (+30 -21), ad_spec_nn.fig (+21 -33), ad_spec_nnm.fig (+17 -19)
westram 2015-11-27 19:31 Rev.: 14556


* reintegrates 'dbsave' into 'trunk'
- implements #665
* adds: log:branches/dbsave@14521:14555

21 lines of code changed in 2 files:

  • lib/pictures: save_as.fig (+21 -20), sel_box_user3.fig (del)
westram 2015-11-11 09:42 Rev.: 14488


* remove duplicate CLOSE/CANCEL buttons (they only suggest window is modal, while it isnt)

83 lines of code changed in 5 files:

  • lib/pictures: sel_box.fig (+9 -11), sel_box_nds.fig (+20 -22), sel_box_tree.fig (+14 -17), sel_box_user3.fig (+23 -25), tree_export.fig (+17 -19)
westram 2015-09-04 11:42 Rev.: 14259


* belongs to [14258]

15 lines of code changed in 1 file:

  • lib/pictures: help.fig (+15 -28)
westram 2015-09-02 16:31 Rev.: 14256


* reintegrates 'config' into 'trunk' (implements #607)
* adds: log:branches/config@14199:14255

26 lines of code changed in 1 file:

  • lib/pictures: nt_selection.fig (+26 -16)
westram 2015-08-07 10:46 Rev.: 14145


* add scalers to SECEDIT display options

17 lines of code changed in 1 file:

  • lib/pictures: sec_display.fig (+17 -19)
westram 2015-08-01 09:43 Rev.: 14123


* merge [14030] + [14032] from 'markers' into 'trunk'

78 lines of code changed in 2 files:

  • lib/pictures: iupac.fig (new 60), pd_match_iupac.fig (+18 -12)
westram 2015-07-31 15:33 Rev.: 14120


* remove now unused fig (also from [1463])

0 lines of code changed in 1 file:

  • lib/pictures: conservProfile2Gnuplot.fig (del)
westram 2015-07-28 15:42 Rev.: 14093


* SAI/PROBE match
- 'Select display field' window
* document
* fix layout
* fix crash when selecting 'no field'
- link other 'Properties' menu entries to existing helpfiles

15 lines of code changed in 1 file:

  • lib/pictures: displayField.fig (+15 -17)
westram 2015-07-28 13:52 Rev.: 14091


* RNA3D
- help-link buttons in main window
- remove unfinished help-window (replace by standard help) + remove now unused resources
- create stub for 'Change molecule' (23s only, undocumented and probably broken)

0 lines of code changed in 1 file:

  • lib/pictures: RNA3D_Help.fig (del)
westram 2015-07-28 11:31 Rev.: 14089


* merge 2 genemap property windows
* document genemap properties, jump, display types

78 lines of code changed in 3 files:

  • lib/pictures: gen_options.fig (new 78), gene_layout.fig (del), gene_options.fig (del)
westram 2015-07-26 13:18 Rev.: 14087


* deny to use source- as target-alignment in "concat alignments"

1 lines of code changed in 1 file:

  • lib/pictures: concatenate.fig (+1 -1)
westram 2015-07-26 12:11 Rev.: 14085


* concat alignments
- default to alignment type of current alignment (at startup)
- remove interactive questions by GUI-toggles
- add button to "use" selected alignment as target

7 lines of code changed in 1 file:

  • lib/pictures: concatenate.fig (+7 -7)
westram 2015-07-25 13:58 Rev.: 14082


* merge species / concat alignments
- fix help-links in NT-menu-entries
- update documentation
* added example for 'merge species'
- use typed callbacks
- use different title/button to avoid getting confused about the two 'merge species' windows

10 lines of code changed in 1 file:

  • lib/pictures: merge_species.fig (+10 -10)
westram 2015-07-17 15:12 Rev.: 14043


* remove leftovers from [12758]

0 lines of code changed in 2 files:

  • lib/pictures: ad_table_admin.fig (del), ad_table_fields.fig (del)
westram 2015-07-15 13:42 Rev.: 14025


* reintegrates 'markers' into 'trunk'
* adds:
- log:branches/markers@13954:14024

34 lines of code changed in 3 files:

  • lib/pictures: dbbrowser.fig (+6 -4), mark_configs.fig (new 26), nt_selection.fig (+2 -1)
westram 2015-06-28 11:51 Rev.: 13947


* add AUTOMATCH to probe collection

1 lines of code changed in 1 file:

  • lib/pictures: pd_match_with_specificity.fig (+1)

(236 more)

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