Directory lib/pictures/

Directory Created:
2000-11-23 11:41
Total Files:
94
Deleted Files:
45
Lines of Code:
5171

[root]/lib/pictures
            Folder removed from repo PARS (0 files, 0 lines)
            directory in repo awt (19 files, 589 lines)
            directory in repo awtc (2 files, 37 lines)
            directory in repo consensus (2 files, 880 lines)
            directory in repo cpro (2 files, 76 lines)
            Folder removed from repo demo (0 files, 0 lines)
            directory in repo edit4 (16 files, 1377 lines)
            Folder removed from repo etc (0 files, 0 lines)
            directory in repo faligner (3 files, 149 lines)
            Folder removed from repo findcorr (0 files, 0 lines)
            directory in repo merge (12 files, 488 lines)
            directory in repo pars (3 files, 177 lines)
            directory in repo phylo (3 files, 60 lines)
            directory in repo query (5 files, 133 lines)
            Folder removed from repo seer (0 files, 0 lines)
            Folder removed from repo unused (0 files, 0 lines)
                Folder removed from repo demo (0 files, 0 lines)
                Folder removed from repo findcorr (0 files, 0 lines)
            directory in repo window (1 files, 30 lines)

Lines of Code

lib/pictures/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 442 (100.0%) 12833 (100.0%) 29.0
westram 302 (68.3%) 6339 (49.4%) 20.9
yadhu 50 (11.3%) 3281 (25.6%) 65.6
oldcode 68 (15.4%) 2685 (20.9%) 39.4
huberj 6 (1.4%) 220 (1.7%) 36.6
baderk 7 (1.6%) 132 (1.0%) 18.8
foerster 3 (0.7%) 128 (1.0%) 42.6
richter 2 (0.5%) 26 (0.2%) 13.0
epruesse 1 (0.2%) 14 (0.1%) 14.0
spanfeln 3 (0.7%) 8 (0.1%) 2.6

Most Recent Commits

westram 2018-10-31 10:52 Rev.: 17593


* reintegrates 'fix' into 'trunk'
- performs #798
* adds genetic code tables (24-31)
* adds combined amino acid J (I or L)
* improved translate and/or realign
- handle optional start-/stop-codons
- improve recognition of nuc-triples containing IUPAC-codes
* error messages now always list EMBL table numbers
* adds:
- log:branches/fix@17480:17485,17491:17492,17494:17507,17509:17528,17534:17592
- log:branches/optional@17481:17568

1 lines of code changed in 1 file:

  • lib/pictures: iupac.fig (+1 -1)
westram 2018-09-03 14:02 Rev.: 17350


* GUI cosmetic

7 lines of code changed in 1 file:

  • lib/pictures: move_groups.fig (+7 -5)
westram 2018-08-30 17:24 Rev.: 17342


* reintegrates 'group' into 'trunk'
- implements #780
* adds: log:branches/group@17162:17190,17261:17341

101 lines of code changed in 3 files:

  • lib/pictures: ad_two_trees.fig (del), compare_topo.fig (new 32), move_groups.fig (new 69)
westram 2018-07-06 16:02 Rev.: 17160


* reintegrates 'group' into 'trunk'
- misc. cleanup:
* group related functions now all accessible via menu of 1st ntree window
* DRY selection of 2 trees
* warn if annotated tree isnt visible
* fix mnemonics
* fix error handling (compare taxonomy)
* unittest comments added to tree remarks
* names
* adds: log:branches/group@17139:17159

24 lines of code changed in 2 files:

  • lib/pictures: ad_tree.fig (+13 -15), compare_taxonomy.fig (+11 -7)
westram 2017-10-27 19:04 Rev.: 16576


* painful merge from 'alilink' into 'trunk'
- attempt to eliminate existing conflicts by merging log:branches/alilink@12782,12786:12787 (=creation of conflicting files)
- also merged back already resolved conflicts (done in alilink)
- a dozen of manual merges :-(
* adds: log:branches/alilink@12782,12786:12787,13999,14004

31 lines of code changed in 2 files:

  • lib/pictures: realign_dna.fig (new 31), transdna.fig (del)
westram 2017-10-08 15:54 Rev.: 16508


* reintegrates 'macros' into 'trunk'
- introduce generic input prompt (related #179)
- use it instead of locally generated windows:
* species (rename + create)
* alignment (rename, copy + create)
* experiments (rename, copy + create)
* genes (rename, copy + extract)
* mergetool (rename SAI + configs)
* SAIviz color translation (copy + create)
- fixed bugs in mergetool ([16503],[16504])
* adds: log:branches/macros@16484:16507

0 lines of code changed in 1 file:

  • lib/pictures: ad_al_si.fig (del)
westram 2017-09-19 14:40 Rev.: 16391


* full update from child 'aci' into 'trunk'
- allow to view console from inside ARB
- slightly tweaked ACI trace
* adds: log:branches/aci@16386:16390

6 lines of code changed in 1 file:

  • lib/pictures: pd_admin.fig (+6 -4)
westram 2017-09-02 12:54 Rev.: 16259


* show build date in intro window

43 lines of code changed in 1 file:

  • lib/pictures: arb_intro.fig (+43 -35)
westram 2017-06-02 11:17 Rev.: 15982


* full update from child 'fix' into 'trunk'
- fixes #478
* adds: log:branches/fix@15976:15981

16 lines of code changed in 1 file:

  • lib/pictures: ad_spec.fig (+16 -15)
westram 2017-05-21 17:59 Rev.: 15966


* reintegrates 'group' into 'trunk'
- implements #652 (group search)
* adds: log:branches/group@15733:15740,15743:15748,15750:15752,15754,15756,15758:15777,15781:15793,15796,15798:15806,15808:15817,15819:15965

106 lines of code changed in 2 files:

  • lib/pictures: group_search.fig (new 83), group_trees.fig (new 23)
westram 2016-10-15 11:53 Rev.: 15340


* reintegrates 'sync' into 'trunk'
- implements #683
* adds: log:branches/sync@15291,15301:15312,15315:15318,15320:15329,15331:15339

20 lines of code changed in 1 file:

  • lib/pictures: syncscroll.fig (new 20)
westram 2016-07-14 15:15 Rev.: 15054


* reintegrates 'color' into 'trunk'
- implements #443 (+parts of #444)
* adds: log:branches/color@14920:14921,14923:14928,14930:14939,14941:14951,14954:14956,14958:14959,14961:14964,14968,14970:14981,14985,14988,14990:14992,14994:14999,15001:15004,15007,15009,15012:15026,15028:15035,15037:15039,15041:15053

57 lines of code changed in 1 file:

  • lib/pictures: item_shader_cfg.fig (new 57)
westram 2016-04-29 18:02 Rev.: 14786


* reintegrates 'gde' into 'trunk'
- fixes #695
* adds: log:branches/gde@14670:14675,14682:14785

96 lines of code changed in 7 files:

  • lib/pictures: ad_conv.fig (+8 -8), ad_spec_nnm.fig (+10 -10), chimera_check.fig (+14 -12), compare_taxonomy.fig (+18 -24), join_species.fig (+16 -19), merge_species.fig (+15 -11), nt_sort.fig (+15 -16)
westram 2016-04-15 10:22 Rev.: 14729


* remove obsolete probe-group-interface
- also eliminates one unwanted selection-list-callback

0 lines of code changed in 1 file:

  • lib/pictures: pg_select.fig (del)
westram 2016-03-15 14:53 Rev.: 14696


* add missing 'help' label to xfig (fixes #693)
* minor layout fixes

16 lines of code changed in 1 file:

  • lib/pictures: sel_box_tree.fig (+16 -16)
westram 2015-12-16 16:13 Rev.: 14622


* reintegrates 'ui' into 'trunk'
- implements #656
- adds instant update for
* next neighbour search
* branch analysis (mark functions)
* arb-phylo (filter setup)
* adds: log:branches/ui@14588:14621

68 lines of code changed in 3 files:

  • lib/pictures: ad_branch.fig (+30 -21), ad_spec_nn.fig (+21 -33), ad_spec_nnm.fig (+17 -19)
westram 2015-11-27 20:31 Rev.: 14556


* reintegrates 'dbsave' into 'trunk'
- implements #665
* adds: log:branches/dbsave@14521:14555

21 lines of code changed in 2 files:

  • lib/pictures: save_as.fig (+21 -20), sel_box_user3.fig (del)
westram 2015-11-11 10:42 Rev.: 14488


* remove duplicate CLOSE/CANCEL buttons (they only suggest window is modal, while it isnt)

83 lines of code changed in 5 files:

  • lib/pictures: sel_box.fig (+9 -11), sel_box_nds.fig (+20 -22), sel_box_tree.fig (+14 -17), sel_box_user3.fig (+23 -25), tree_export.fig (+17 -19)
westram 2015-09-04 12:42 Rev.: 14259


* belongs to [14258]

15 lines of code changed in 1 file:

  • lib/pictures: help.fig (+15 -28)
westram 2015-09-02 17:31 Rev.: 14256


* reintegrates 'config' into 'trunk' (implements #607)
* adds: log:branches/config@14199:14255

26 lines of code changed in 1 file:

  • lib/pictures: nt_selection.fig (+26 -16)
westram 2015-08-07 11:46 Rev.: 14145


* add scalers to SECEDIT display options

17 lines of code changed in 1 file:

  • lib/pictures: sec_display.fig (+17 -19)
westram 2015-08-01 10:43 Rev.: 14123


* merge [14030] + [14032] from 'markers' into 'trunk'

78 lines of code changed in 2 files:

  • lib/pictures: iupac.fig (new 60), pd_match_iupac.fig (+18 -12)
westram 2015-07-31 16:33 Rev.: 14120


* remove now unused fig (also from [1463])

0 lines of code changed in 1 file:

  • lib/pictures: conservProfile2Gnuplot.fig (del)
westram 2015-07-28 16:42 Rev.: 14093


* SAI/PROBE match
- 'Select display field' window
* document
* fix layout
* fix crash when selecting 'no field'
- link other 'Properties' menu entries to existing helpfiles

15 lines of code changed in 1 file:

  • lib/pictures: displayField.fig (+15 -17)
westram 2015-07-28 14:52 Rev.: 14091


* RNA3D
- help-link buttons in main window
- remove unfinished help-window (replace by standard help) + remove now unused resources
- create stub for 'Change molecule' (23s only, undocumented and probably broken)

0 lines of code changed in 1 file:

  • lib/pictures: RNA3D_Help.fig (del)
westram 2015-07-28 12:31 Rev.: 14089


* merge 2 genemap property windows
* document genemap properties, jump, display types

78 lines of code changed in 3 files:

  • lib/pictures: gen_options.fig (new 78), gene_layout.fig (del), gene_options.fig (del)
westram 2015-07-26 14:18 Rev.: 14087


* deny to use source- as target-alignment in "concat alignments"

1 lines of code changed in 1 file:

  • lib/pictures: concatenate.fig (+1 -1)
westram 2015-07-26 13:11 Rev.: 14085


* concat alignments
- default to alignment type of current alignment (at startup)
- remove interactive questions by GUI-toggles
- add button to "use" selected alignment as target

7 lines of code changed in 1 file:

  • lib/pictures: concatenate.fig (+7 -7)
westram 2015-07-25 14:58 Rev.: 14082


* merge species / concat alignments
- fix help-links in NT-menu-entries
- update documentation
* added example for 'merge species'
- use typed callbacks
- use different title/button to avoid getting confused about the two 'merge species' windows

10 lines of code changed in 1 file:

  • lib/pictures: merge_species.fig (+10 -10)
westram 2015-07-17 16:12 Rev.: 14043


* remove leftovers from [12758]

0 lines of code changed in 2 files:

  • lib/pictures: ad_table_admin.fig (del), ad_table_fields.fig (del)
westram 2015-07-15 14:42 Rev.: 14025


* reintegrates 'markers' into 'trunk'
* adds:
- log:branches/markers@13954:14024

34 lines of code changed in 3 files:

  • lib/pictures: dbbrowser.fig (+6 -4), mark_configs.fig (new 26), nt_selection.fig (+2 -1)
westram 2015-06-28 12:51 Rev.: 13947


* add AUTOMATCH to probe collection

1 lines of code changed in 1 file:

  • lib/pictures: pd_match_with_specificity.fig (+1)
westram 2015-06-28 12:00 Rev.: 13945


* two 'CLEAR'-buttons are not clear :)
* remove safety question when forgetting match results
* toggle order: EDIT, MATCH, FORGET

3 lines of code changed in 1 file:

  • lib/pictures: pd_match_with_specificity.fig (+3 -3)
westram 2015-06-28 09:40 Rev.: 13942


* added a MODIFY button (replaces selected probe)
* selecting a probe updates 'Target string' and 'Probe name' (to allow to modify it)
* select new/modified entry
* show some reasons (if probe not added/modified)

49 lines of code changed in 1 file:

  • lib/pictures: pd_match_probe_collection.fig (+49 -52)
westram 2015-06-12 21:08 Rev.: 13923


* reintegrates '!ProbeMatchCollection' into 'trunk'
- does #479
* adds:
- log:branches/ProbeMatchCollection@13801,13803:13804,13807:13840,13842:13849,13852:13922

112 lines of code changed in 2 files:

  • lib/pictures: pd_match_probe_collection.fig (new 75), pd_match_with_specificity.fig (new 37)
westram 2015-05-27 15:12 Rev.: 13821


* implements #651

43 lines of code changed in 1 file:

  • lib/pictures: compare_taxonomy.fig (new 43)
westram 2015-04-19 15:31 Rev.: 13753


* edit4 key mappings
- added config manager
- use 2-column layout
- replaced magic awar names by define/inline

32 lines of code changed in 1 file:

  • lib/pictures: ed_key.fig (+32 -14)
westram 2015-04-16 16:47 Rev.: 13733


* add config manager to secedit display settings
* fix macro id for bond definition window (failed assertion)

21 lines of code changed in 1 file:

  • lib/pictures: sec_display.fig (+21 -20)
westram 2015-04-15 09:45 Rev.: 13719


* add config managers to 'next relative searches'

5 lines of code changed in 2 files:

  • lib/pictures: ad_spec_nn.fig (+4 -1), ad_spec_nnm.fig (+1)
westram 2015-04-13 15:41 Rev.: 13715


* add config manager to tree export

36 lines of code changed in 2 files:

  • lib/pictures: sel_box_user2.fig (del), tree_export.fig (new 36)

(228 more)

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