Directory PERL_SCRIPTS/SPECIES/

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westram 2022-12-13 11:06 Rev.: 19355

* adds script to detect new field content in marked subset of species (compared with unmarked subset).
* fix whitespace only in {{{listMarkedSpecies.pl}}}.

129 lines of code changed in 2 files:

• PERL_SCRIPTS/SPECIES: findNewContent.pl (new 121), listMarkedSpecies.pl (+8 -8)

westram 2020-07-23 16:33 Rev.: 18470

* also check inconsistencies on top-level.
* ensure listed inconsistencies contain no duplicates.

15 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: clone_taxonomy.pl (+15 -9)

westram 2020-07-23 15:28 Rev.: 18469

* separate configure section.
* do not list correct genera by default (via configure section).
* track + log tax entries with invalid number of hierarchy levels.
* log inconsistencies in tax hierarchy.
- logs inconsistencies for invalid tax entries (via configure section).

72 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: clone_taxonomy.pl (+72 -12)

westram 2020-07-16 12:37 Rev.: 18468

* optionally
- dump statistic about taxonomy.
- perform statistic only on marked.

100 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: clone_taxonomy.pl (+100 -20)

westram 2020-07-15 14:07 Rev.: 18467

* script to clone 'tax_ltp' entries from existing gb_species belonging to the same genus.

242 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: clone_taxonomy.pl (new 242)

westram 2018-02-21 10:56 Rev.: 16866

* adds a perl script that allows to overwrite field 'name' with the content of another database field
- helpful e.g. to import trees that use 'acc' or 'full_name' as leafname

99 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: useFieldAsID.pl (new 99)

westram 2014-06-13 16:53 Rev.: 12442

- remove rest of non-unix LFs (trailing \r's)

1 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: markSpecies.pl (+1)

westram 2014-03-12 11:19 Rev.: 11778

* reintegrates 'macros' into 'trunk'
- implements #456
* adds:
- log:branches/macros@11761:11777

2 lines of code changed in 3 files:

• PERL_SCRIPTS/SPECIES: listMarkedSpecies.pl (+1 -1), markSpecies.pl (+1 -1), tools.pm (del)

westram 2013-06-14 17:56 Rev.: 10158

* appellation
- name, shortname, ... -> (unique) species ID
- generate names -> synchronize IDs
* fixes #304
- ask to recreate ID (experts only)

1 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: markSpecies.pl (+1 -1)

westram 2011-07-22 20:16 Rev.: 7737

* again added possibility to mark by acc etc. (was accidently dropped in [5767])
* added switch '-ambiguous' (allow multiple matches)
* added switch '-partial' (allow partial matches)

73 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: markSpecies.pl (+73 -22)

westram 2011-02-04 16:30 Rev.: 7126

- added GDE entry to import fields from calc-sheets
- importer
- can now handle CSV with quoted entries
- report and forward error to ARB (if using ':')
- renamed NDS exporter

1 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: tools.pm (+1 -1)

westram 2011-02-01 17:27 Rev.: 7110

- fixed include path

1 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: listMarkedSpecies.pl (+1 -1)

westram 2009-11-21 14:24 Rev.: 6263

- removed deprecated function GB_get_error() aka get_error() from perl interface

1 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: tools.pm (+1 -2)

westram 2009-06-03 06:55 Rev.: 5991

* fixed include path (thx elmar). See #178

1 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: markSpecies.pl (+1 -1)

westram 2009-04-24 12:30 Rev.: 5859

- one warning more

1 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: markSpecies.pl (+1 -1)

westram 2009-04-24 12:25 Rev.: 5858

* fixed errors and warnings in perl scripts

21 lines of code changed in 2 files:

• PERL_SCRIPTS/SPECIES: markSpecies.pl (+1 -1), tools.pm (+20 -1)

westram 2009-03-16 12:50 Rev.: 5767

* new switches -keep and -unmark for markSpecies.pl
* improved error handling

125 lines of code changed in 3 files:

• PERL_SCRIPTS/SPECIES: listMarkedSpecies.pl (+6 -11), markSpecies.pl (+93 -101), tools.pm (new 26)

westram 2008-12-25 13:03 Rev.: 5675

- removed automatic timestamps (the best they were good for, were vc-conflicts)

0 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: listMarkedSpecies.pl (-1)

westram 2008-06-06 13:23 Rev.: 5390

- TAB-Ex

4 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: markSpecies.pl (+4 -4)

westram 2008-01-29 17:33 Rev.: 5042

- automatically convert MAC/DOS linefeeds

2 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: markSpecies.pl (+2)

westram 2008-01-24 18:03 Rev.: 5039

- can also mark by acc etc.
- option to ignore leading/trailing spaces

57 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: markSpecies.pl (+57 -7)

westram 2007-10-29 14:43 Rev.: 4906

- stricter error handling
- prints what has been done

55 lines of code changed in 1 file:

• PERL_SCRIPTS/SPECIES: markSpecies.pl (+55 -61)

westram 2006-10-13 16:42 Rev.: 4197

*** empty log message ***

146 lines of code changed in 2 files:

• PERL_SCRIPTS/SPECIES: listMarkedSpecies.pl (new 56), markSpecies.pl (new 90)