Directory GDE/AxML/

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westram 2023-08-11 13:40 Rev.: 19480

* reintegrates 'gde' into 'trunk'
* adds: log:branches/gde@19460:19479

13 lines of code changed in 2 files:

• GDE/AxML: axml.c (+9 -11), axml.h (+4 -4)

westram 2023-08-05 14:34 Rev.: 19456

* fix builds of AxML, FASTDNAML + SUPPORT
- mostly fixed by add missing includes.
- had to change code order to avoid otherwise required definition of protytypes in SUPPORT.

6 lines of code changed in 1 file:

• GDE/AxML: axml.c (+6 -3)

westram 2023-08-05 13:40 Rev.: 19446

* introduce {{{onlyC_flags}}}
- flags used for C compilation only.
- similar to {{{cxxflags}}} (references added).
- pass down onlyC_flags into AxML, CLUSTAL, CLUSTALW, FASTDNAML, FASTTREE, GL, MrBAYES, PHYLIP, PHYML*, RAxML, SINA(unused), SOURCE_TOOLS, SUPPORT, TOOLS, TREEGEN + TREEPUZZLE.
- set flags to {{{-Werror-implicit-function-declaration}}}
* error is only effective in a small part of these modules.
* TODO: need to activate warnings -> will activate the error as well.

1 lines of code changed in 1 file:

• GDE/AxML: Makefile (+1 -1)

westram 2018-10-17 11:00 Rev.: 17478

* reintegrates 'svalues' into 'trunk'
- implements #614
* adds: log:branches/svalues@17357:17419,17428:17464,17469,17471:17477

1 lines of code changed in 1 file:

• GDE/AxML: axml.c (+1 -1)

westram 2014-03-18 21:45 Rev.: 11815

* reintegrates 'deb' into 'trunk'
- fixes #215
- performs #489
* adds:
- log:branches/deb@11801:11814

5 lines of code changed in 3 files:

• GDE/AxML: Makefile (+3 -5), axml.c (+2), axml.h (-6)

westram 2013-10-29 13:23 Rev.: 10955

- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

1 lines of code changed in 1 file:

• GDE/AxML: Makefile (+1 -1)

westram 2013-02-13 13:24 Rev.: 9575

- effect of [9574] (comments only)

1 lines of code changed in 1 file:

• GDE/AxML: Makefile (+1 -1)

westram 2009-05-15 09:29 Rev.: 5909

* use strchr and strstr from standard lib

2 lines of code changed in 1 file:

• GDE/AxML: axml.c (+2 -2)

westram 2009-05-08 13:48 Rev.: 5896

- removed undefined variable

1 lines of code changed in 1 file:

• GDE/AxML: Makefile (+1 -1)

westram 2009-04-29 13:20 Rev.: 5872

* Changed variable transfer to sub-makefiles
- most variables are now exported via environment (using SOURCE_TOOLS/export2sub or AISC/export2sub)
- only variables that contain different values for different sub-makefile-calls are passed by cl (e.g. cflags, MAIN)
- changed flavour of exported variables (recursively expanded -> simply expanded variables). Please use VAR := VALUE in Makefiles (not VAR = VALUE). See http://www.gnu.org/software/make/manual/html_node/Flavors.html#Flavors for details
* removed/fixed all undefined variables in Makefiles (using 'make --warn-undefined-variables')
* changed names of compile-logs generated in GDE subdir
* added target 'xmlin' (broken, print warning)

1 lines of code changed in 1 file:

• GDE/AxML: Makefile (+1 -1)

boehnel 2008-02-26 17:59 Rev.: 5085

"%d -> %ld"

4 lines of code changed in 1 file:

• GDE/AxML: axml.c (+4 -4)

westram 2004-01-23 19:08 Rev.: 2338

fixed and reformatted dependencies (using fix_depends.pl)

3 lines of code changed in 1 file:

• GDE/AxML: Makefile (+3)

westram 2003-12-03 19:31 Rev.: 2262

*** empty log message ***

15 lines of code changed in 1 file:

• GDE/AxML: AxML.doc (new 15)

westram 2003-08-09 14:00 Rev.: 1617

- updated dependencies for all Makefiles
- rewrote dependency generation code. Only real changes
propagate into Makefiles - so it does no longer hurt to
call 'make depends' in ARB directory!

14 lines of code changed in 1 file:

• GDE/AxML: Makefile (+14 -7)

westram 2002-11-27 20:33 Rev.: 992

*** empty log message ***

0 lines of code changed in 1 file:

• GDE/AxML: axml.ps (new)

westram 2002-07-16 12:00 Rev.: 751

builds $ARBHOME/GDEHELP/fastdnaml.help

2 lines of code changed in 1 file:

• GDE/AxML: Makefile (+2 -1)

westram 2002-07-15 15:07 Rev.: 746

AxML 1.9

5957 lines of code changed in 3 files:

• GDE/AxML: Makefile (new 48), axml.c (new 5622), axml.h (new 287)