Directory lib/arb_default/

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westram 2015-12-03 15:57 Rev.: 14581

* do not reopen file/pipe to read ascii database format (avoids one broken-pipe error)
- use same detection method as already by {{{GBT_check_arb_file}}}
- arb now refuses to load ascii-databases without correct header
* added missing ascii-header to status.arb (default property file)
* {{{GBT_check_arb_file}}} now opens decompression pipe with stderr redirected
- hides the 'broken pipe' error always occurring from there (because only a few bytes get read)

1 lines of code changed in 1 file:

• lib/arb_default: status.arb (+1)

westram 2015-12-03 15:36 Rev.: 14580

* unused

0 lines of code changed in 1 file:

• lib/arb_default: phyl.arb (del)

westram 2012-04-20 07:14 Rev.: 8623

merge from e4fix [8376] [8377] [8378] [8379] [8380] [8386] [8387] [8388] [8389]

* do not save AWARs which have default values
- motivation: edit4-props saved after [8362] did not load with older versions
- pros:
* if the user did not change the default, changing the default in code will propagate to the user
- cons:
* AWARs used by multiple applications will trigger in non-saving application, when the database containing the awar is saved
- only happens once if AWAR was previously stored with default-value
- the most obvious ones were those edit4-search-strings linked to ntree (primer, probe, gene). disarmed them by setting the default to NULL
* always generate definitions of SAI color translation tables (since default no longer saved)
- drawback: when user deletes a default color translation table, it will re-appear after restart
* allow experts to save fast-aligner protection to properties
* deliver errors exported by awar callbacks (when triggered by widget change)
* sequence color mapping
- translate stored old default ('=0') to new default (!'') on awar creation
- removed code talking to AWARs via ARBDB interface - just use AWARs straightforward
* ignore request_refresh_for_sequence_terminals when there is no hierarchy yet (now triggered by seq colors)
* lib/arb_default/edit4.arb
- removed default values (where code defaulted to same value)
- changed some defaults
* aligner (explicit, but empty ref)
* helix setting (stolen from WL)
* lib/arb_default/ntree.arb
- removed all values
* equal to default value
* obsolete entries (former awar names)
* entries that are now stored in main DB
* removed unused AWARS (AWTC_create_rename_awars)
* default for AWAR_TREE now "" everywhere
* removed unused AISC variable
* renamed edit direction related variables/awars

2 lines of code changed in 2 files:

• lib/arb_default: edit4.arb (+1 -273), ntree.arb (+1 -520)

westram 2011-08-24 18:46 Rev.: 7887

* separated functionality of gap-insertion and toggling gap-type
- '.', '-' and space now always
* insert a gap character in align- or insert-edit-mode and
* overwrite a position with a gap in replace-edit-mode
- above keys+CTRL changes the gaptype of a complete gap-chain (works in edit- and align-mode)
* removed default key-mapping ' '->'-' (handled internally)
- added advice for those who already saved their edit4 properties

2 lines of code changed in 1 file:

• lib/arb_default: edit4.arb (+2 -2)

westram 2011-04-29 14:14 Rev.: 7488

* merges [7486] [7487] to trunk

1 lines of code changed in 1 file:

• lib/arb_default: ntree.arb (+1 -1)

westram 2010-02-09 12:32 Rev.: 6411

* removed unused vectorfont

0 lines of code changed in 7 files:

• lib/arb_default: dist.arb (-9), edit.arb (del), edit4.arb (-9), merge.arb (-9), ntree.arb (-8), pars.arb (-8), phylo.arb (-9)

westram 2004-12-09 17:49 Rev.: 3438

- changed application color for ARB_PARSIMONY

1 lines of code changed in 1 file:

• lib/arb_default: pars.arb (+1 -1)

westram 2004-09-23 15:33 Rev.: 3202

- removed seq-color mapping (now hardcoded in EDIT4)

0 lines of code changed in 1 file:

• lib/arb_default: edit4.arb (-183)

westram 2004-02-18 20:39 Rev.: 2423

- changed linefeeds into \n

7 lines of code changed in 1 file:

• lib/arb_default: phylo.arb (+7 -21)

westram 2003-11-14 14:32 Rev.: 2166

- converted old-formatted strings

3 lines of code changed in 1 file:

• lib/arb_default: status.arb (+3 -3)

yadhu 2003-05-23 12:26 Rev.: 1461

1. New feature to maintain tips and tricks that are available in ARB.
2. User can view the tips and tricks that are associated with ARB_NTREE window and
Primary Structure Editor (ARB_EDIT4) Window.
3. User can also add and change tips at his disposal and maintain the same
as local database.

1 lines of code changed in 1 file:

• lib/arb_default: edit4.arb (+1)

yadhu 2003-04-25 15:35 Rev.: 1319

*** empty log message ***

6 lines of code changed in 1 file:

• lib/arb_default: edit4.arb (+6 -6)

westram 2002-08-20 22:37 Rev.: 841

*** empty log message ***

22 lines of code changed in 1 file:

• lib/arb_default: edit4.arb (+22 -22)

westram 2002-07-03 10:24 Rev.: 711

changed default application color

1 lines of code changed in 1 file:

• lib/arb_default: edit4.arb (+1 -1)

oldcode 2000-11-23 10:41 Rev.: 2

Initial revision

2124 lines of code changed in 9 files:

• lib/arb_default: dist.arb (new 97), edit.arb (new 392), edit4.arb (new 526), merge.arb (new 174), ntree.arb (new 532), pars.arb (new 92), phyl.arb (new), phylo.arb (new 305), status.arb (new 6)