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westram 2021-09-15 13:52 Rev.: 18730

* remove trailing whitespace from c source.

34 lines of code changed in 8 files:

• AISC: aisc.c (+4 -4), aisc_commands.c (+9 -9), aisc_eval.c (+2 -2), aisc_eval.h (+2 -2), aisc_interpreter.h (+8 -8), aisc_location.h (+2 -2), aisc_mix.c (+2 -2), aisc_var_ref.c (+5 -5)

westram 2021-09-15 13:45 Rev.: 18727

* inline {{{SOURCES}}} where only used to generate list of objects.

2 lines of code changed in 1 file:

• AISC: Makefile (+2 -2)

westram 2019-05-10 13:57 Rev.: 17877

* reintegrates 'gcc' into 'trunk'
* adds: log:branches/gcc@17850:17876

32 lines of code changed in 1 file:

• AISC: aisc_parser.h (+32 -20)

westram 2019-03-04 15:22 Rev.: 17634

* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

1 lines of code changed in 1 file:

• AISC: .gitignore (new 1)

westram 2017-11-28 19:22 Rev.: 16766

* reintegrates 'gcc' into 'trunk'
- mostly cosmetics changes
* adds: log:branches/gcc@16655,16741:16743,16752:16765

1 lines of code changed in 1 file:

• AISC: aisc.c (+1 -4)

westram 2017-11-28 18:09 Rev.: 16763

* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751

130 lines of code changed in 13 files:

• AISC: aisc.c (+9 -9), aisc_commands.c (+24 -21), aisc_def.h (+1 -1), aisc_eval.c (+3 -3), aisc_eval.h (+3 -3), aisc_inline.h (+4 -2), aisc_interpreter.h (+17 -17), aisc_location.h (+3 -3), aisc_mix.c (+15 -15), aisc_parser.c (+17 -17), aisc_parser.h (+1 -1), aisc_token.h (+20 -20), aisc_var_ref.c (+13 -13)

westram 2017-08-09 14:59 Rev.: 16223

* reintegrates 'cover' into 'trunk'
- fixes compilation with COVERAGE
* ARB perl module failed to load (since [13739])
* linking executables broken (apparently since [14038])
* adds: log:branches/cover@16213:16222

1 lines of code changed in 1 file:

• AISC: Makefile (+1 -1)

westram 2017-01-09 16:10 Rev.: 15529

* reintegrates 'warnings' into 'trunk'
- use gnu++14-standard for gcc>=6
- use gnu++0x-standard for gcc<4.7 (bugfix)
- defines many inlines as constexpr
* adds: log:branches/warnings@15515:15522,15525:15528

9 lines of code changed in 1 file:

• AISC: aisc_inline.h (+9 -9)

westram 2017-01-07 14:55 Rev.: 15525

* partial merge from 'warnings' into 'trunk'
- fix dead code (merge error by [7413])
* adds: log:branches/warnings@15523:15524

2 lines of code changed in 3 files:

• AISC: aisc.h (del), aisc_def.h (+1 -1), aisc_interpreter.h (+1 -1)

westram 2016-08-17 20:39 Rev.: 15198

* remove {{{virtual}}} if {{{OVERRIDE}}} is present
- OVERRIDE implies 'implicit virtual' (if code compiles as C++11 <- tested on build server!)

5 lines of code changed in 1 file:

• AISC: aisc_commands.c (+5 -5)

westram 2016-08-11 11:05 Rev.: 15176

* reintegrates 'fixres' into 'trunk'
- fixes #715
* adds: log:branches/fixres@15127:15175

12 lines of code changed in 1 file:

• AISC: aisc_interpreter.h (+12 -2)

westram 2015-05-01 11:09 Rev.: 13795

* improve hash quality
- avoid "left shift of negative value" reported by sanitizer (lost bits of hash key)
- ~~change hash size to prime~~ (reapplied by [15524])

3 lines of code changed in 2 files:

• AISC: aisc.h (+1 -1), aisc_mix.c (+2 -2)

westram 2015-01-23 15:19 Rev.: 13443

* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

1 lines of code changed in 1 file:

• AISC: Makefile (+1 -1)

westram 2014-10-17 16:43 Rev.: 13077

* reintegrates 'sanitize' into 'trunk'
* adds:
- log:branches/sanitize@13023:13076

1 lines of code changed in 1 file:

• AISC: Makefile (+1 -1)

westram 2013-11-20 17:38 Rev.: 11176

* fixes compilation with COVERAGE!=0 (was broken by [10956])

1 lines of code changed in 1 file:

• AISC: Makefile (+1 -1)

westram 2013-10-31 16:40 Rev.: 11002

* 'class { public' -> struct

1 lines of code changed in 1 file:

• AISC: aisc_commands.c (+1 -2)

westram 2013-10-31 15:10 Rev.: 10996

* use cflags before cxxflags

1 lines of code changed in 1 file:

• AISC: Makefile (+1 -1)

westram 2013-10-30 17:04 Rev.: 10975

* fixed wrong include variables (CC-CXX-mix). Harmless since includes do not differ atm

1 lines of code changed in 1 file:

• AISC: Makefile (+1 -1)

westram 2013-10-30 16:58 Rev.: 10974

* renamed include variables

1 lines of code changed in 1 file:

• AISC: Makefile (+1 -1)

westram 2013-10-29 13:55 Rev.: 10956

* made A_CC and A_CXX consistent
- A_CXX previously contained cxxflags
- cxxflags are now passed down and used separately

2 lines of code changed in 1 file:

• AISC: Makefile (+2 -3)

westram 2013-10-29 13:23 Rev.: 10955

- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

2 lines of code changed in 1 file:

• AISC: Makefile (+2 -2)

westram 2013-10-29 12:43 Rev.: 10954

- document mechanism used by ARB to export variables to submakefiles
- document most important variables

1 lines of code changed in 1 file:

• AISC: Makefile (+1 -1)

westram 2013-10-28 20:09 Rev.: 10950

* fix cppcheck warnings
- renamed enum members hiding variables
- reintroduced suppressions removed in [10946]
- renamed function index()

63 lines of code changed in 4 files:

• AISC: aisc_commands.c (+12 -10), aisc_interpreter.h (+2 -2), aisc_mix.c (+39 -39), aisc_parser.h (+10 -10)

westram 2013-10-28 18:39 Rev.: 10946

- remove outdated cppcheck-suppressions

0 lines of code changed in 1 file:

• AISC: aisc_commands.c (-2)

westram 2013-06-13 14:31 Rev.: 10148

* makedepend changed behavior between 1.0.2 and 1.0.4
- 1.0.4 does generate impossible dependencies (see [10143] for an example)
- force correct behavior by defining SIMPLE_ARB_ASSERT on CLI (when invoking compiler and makedepend)

18 lines of code changed in 3 files:

• AISC: Makefile (+14 -4), aisc.h (+2 -3), aisc_def.h (+2 -3)

westram 2013-06-04 15:20 Rev.: 10113

* changed dynamic value-initializations into default-initializations
- i believe/know they were used with ignorance of [http://stackoverflow.com/questions/620137/do-the-parentheses-after-the-type-name-make-a-difference-with-new?answertab=active#tab-top ctor-behavior].

1 lines of code changed in 1 file:

• AISC: aisc_commands.c (+1 -1)

westram 2013-02-27 20:30 Rev.: 9620

- effects of [9619]; only shifts some spaces

1 lines of code changed in 1 file:

• AISC: aisc_proto.h (+1 -1)

westram 2013-02-26 12:32 Rev.: 9600

* aisc_mkpt
- default is to generate ANSI headers now (options -A and -z are invalid now)
- added options to force K&R (not used)
- reordered help options
* fixed all calls using -A and/or -z
* no longer use K&R prototypes in SL/TREEDISP

1 lines of code changed in 1 file:

• AISC: Makefile (+1 -1)

westram 2013-02-13 13:24 Rev.: 9575

- effect of [9574] (comments only)

1 lines of code changed in 1 file:

• AISC: Makefile (+1 -1)

westram 2013-02-11 12:35 Rev.: 9533

* use explicit override
- rest

6 lines of code changed in 1 file:

• AISC: aisc_commands.c (+6 -6)

westram 2013-02-09 13:52 Rev.: 9521

- updated depends for [9520]

6 lines of code changed in 1 file:

• AISC: Makefile (+6)

westram 2013-02-09 12:16 Rev.: 9516

- reintegrated branch 'cxx11'

6 lines of code changed in 1 file:

• AISC: Makefile (+6)

westram 2012-07-20 10:45 Rev.: 8823

* add realloc_unleaked() - does not leak if realloc fails (just sets ptr to NULL)
* AISC
- replaced problematic realloc's and throw if realloc fails
- add exception handling to main
- check Interpreter was instanciated before accessing it (crashed during early throw)
- cppcheck-suppress two acceptable leaks

28 lines of code changed in 3 files:

• AISC: aisc.c (+11 -1), aisc_commands.c (+13 -7), aisc_interpreter.h (+4 -2)

westram 2012-05-25 10:31 Rev.: 8751

* guided by clang static checker:
- fix or at least comment many assigned but never used values

0 lines of code changed in 1 file:

• AISC: aisc.c (-3)

westram 2012-04-19 09:13 Rev.: 8607

merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] [8142] [8143] [8144] [8222]
(this revives the reverted patches [8129] [8130] [8131] [8132]; see [8133])

* fixes
- some free/delete mismatches
- wrong definition of ORF objects (Level was no bit value)
- amino consensus (failed for columns only containing 'C')
* rename
- AA_sequence_term -> orf_term
- ED4_sequence_terminal_basic -> ED4_abstract_sequence_terminal
* cleaned up hierarchy dumps
* tweaked is_terminal()/to_terminal()

0 lines of code changed in 1 file:

• AISC: aisc_interpreter.h (changed)

westram 2011-12-23 13:57 Rev.: 8324

- clang-fix: explicitely pass language type to compiler when .c is compiled as c++

1 lines of code changed in 1 file:

• AISC: Makefile (+1 -1)

westram 2011-12-20 13:29 Rev.: 8309

* moved much code into static scope

(partly reverted by [8310])

1 lines of code changed in 1 file:

• AISC: aisc.c (+1 -1)

westram 2011-08-08 01:01 Rev.: 7811

merge from dev [7748] [7749] [7750]
* comments (C->C++ style)
* fixed umlauts in TREEGEN

29 lines of code changed in 6 files:

• AISC: aisc.c (+7 -7), aisc_commands.c (+7 -7), aisc_eval.c (+1 -1), aisc_eval.h (+1 -1), aisc_mix.c (+6 -6), aisc_var_ref.c (+7 -7)

westram 2011-06-16 23:23 Rev.: 7669

* merge from dev [7638] [7639] [7646] [7645] [7647] [7648] [7649] [7650] [7651] [7652]
- compatibility with cppcheck 1.49 (assert + ASSERT_RESULT)
- fixed (AWT and WINDOW)
* missing const attributes
* uninitialized/unused/wrong-scoped/useless variables
* alloc/free/delete mismatches
* use assertions instead of null-pointer-assignments
- removed
* AW_device_Xm fast/slow/fastflag
- new class AW_scalar
* can hold any AW_awar-value
- uses int32_t (AW_awar is based on GB_INT which is 32 bit)
* knows its type
* use in
- AW_option_struct / AW_toggle_struct (both classes were identical -> replaced them by new class AW_widget_value_pair)
- in AW_variable_update_struct (now !VarUpdateInfo)
- in AW_select_table_struct (now AW_selection_list_entry)

10 lines of code changed in 2 files:

• AISC: aisc.c (+2), aisc_parser.h (+8 -7)

westram 2011-06-10 15:50 Rev.: 7623

- merge from dev [7450] [7452] [7456] [7457] [7458] [7459] [7460] [7461] [7464] [7465] [7466] [7467] [7468] [7469] [7482]
* tweaked compiler options
- activated -Weffc++
* postfilter warnings where Scott Meyers' advices are too general.
- base classes should not always have virtual destructors, since that renders tiny classes useless and
- members should not always be initialized via initialization list, since that often violates the DRY principle
* fix gcc's inability to detect that Noncopyable implements a private copy-ctor and op=
* this slows down complete ARB recompilation by ~5%
- added -Wold-style-cast (inactive)
- removed -Wno-non-template-friend added in [7447]
* postcompile.pl
- added option --original to show unmodified compiler output
* declared op= for classes which had a copy-ctor
* moved op= macros to arbtools.h
* derived classes containing pointers from Noncopyable (use Noncopyable virtually) or
* made them copyable if needed (awt_mask_item, KnownDB, Code, AWT_registered_itemtype, GEN_gene, !PosGene, !PartialSequence, !PlugIn, Range, Convaln_exception)
* other related changes
- user mask destruction working now

49 lines of code changed in 10 files:

• AISC: Makefile (+3), aisc.c (+2 -2), aisc_commands.c (+2 -2), aisc_eval.h (+1 -1), aisc_interpreter.h (+6 -6), aisc_mix.c (+9 -10), aisc_parser.c (+2 -2), aisc_parser.h (+17 -2), aisc_token.h (+6 -3), aisc_var_ref.c (+1 -1)

(59 more)