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| Author | Changes | Lines of Code | Lines per Change |
|---|---|---|---|
| Totals | 4143 (100.0%) | 145765 (100.0%) | 35.1 |
| westram | 3986 (96.2%) | 120709 (82.8%) | 30.2 |
| oldcode | 44 (1.1%) | 23880 (16.4%) | 542.7 |
| epruesse | 25 (0.6%) | 540 (0.4%) | 21.6 |
| meierh | 7 (0.2%) | 230 (0.2%) | 32.8 |
| boehnel | 43 (1.0%) | 181 (0.1%) | 4.2 |
| spanfeln | 9 (0.2%) | 94 (0.1%) | 10.4 |
| baderk | 15 (0.4%) | 59 (0.0%) | 3.9 |
| lai | 2 (0.0%) | 42 (0.0%) | 21.0 |
| richter | 6 (0.1%) | 12 (0.0%) | 2.0 |
| yadhu | 2 (0.0%) | 7 (0.0%) | 3.5 |
| artemov | 2 (0.0%) | 6 (0.0%) | 3.0 |
| jobb | 2 (0.0%) | 5 (0.0%) | 2.5 |
* reintegrates 'refactor' into 'trunk'
- polish {{{GBS_strstruct}}}
* adds: log:branches/refactor@19339:19345
11 lines of code changed in 6 files:
* reintegrates 'refactor' into 'trunk'
- eliminates old interface of {{{GBS_strstruct}}}
- add a few new unittests (editor-config string + some PT-SERVER-functions)
* adds: log:branches/refactor@19300:19338
220 lines of code changed in 12 files:
* reject groupnames which would be misinterpreted as bootstrap values
- misinterpretation would happen during re-import after export
22 lines of code changed in 1 file:
* pull-out {{{parse_treelabel()}}} from {{{setBranchName_acceptingBootstrap()}}}.
38 lines of code changed in 1 file:
* use + add wrapped concatenators to {{{GBS_strstruct}}}
1 lines of code changed in 1 file:
* warn about..
- {{{;}}} in group names (conflicts with taxonomy).
- group names containing underscores (reserved for group overlaps).
- group names ending with {{{~NUM}}} (reserved for splitted groups).
24 lines of code changed in 1 file:
* use {{{MessageSpamFilter}}} when generating groups:
- from callers which may spam arbs message box.
* part of #832
5 lines of code changed in 2 files:
* define + use KEELED_INDICATOR instead of hardcoding '!'\\=> related code is now easy to find.
8 lines of code changed in 3 files:
* revive old version of {{{GBT_add_new_changekey}}} (=interface before [19140]).
- mark as deprecated
- implement via {{{GBT_add_new_species_changekey}}}
- fixes binary compatibility for sina 1.3 binary (still used on ubuntu 10.04)
11 lines of code changed in 2 files:
* rename {{{GBT_add_new_changekey}}} -> {{{GBT_add_new_species_changekey}}}.
3 lines of code changed in 2 files:
* reintegrates 'sina' into 'trunk'
- build/deliver sina together with arb
* adds: log:branches/sina@18984:19043,19046:19069,19072:19244
8 lines of code changed in 4 files:
* reintegrates 'split' into 'trunk'
- completes #846
* adds: log:branches/split@19169:19221
24 lines of code changed in 1 file:
* reintegrates 'ali' into 'trunk'
* adds: log:branches/ali@19183:19205
138 lines of code changed in 5 files:
* reintegrates 'split' into 'trunk'
* adds: log:branches/split@19102:19166
178 lines of code changed in 10 files:
* correct recursive call used to create hierarchical key-prefixes:
- did use wrong keypath for ALL BUT species.
1 lines of code changed in 1 file:
* javadoc {{{GBT_add_new_changekey_to_keypath}}}.
7 lines of code changed in 1 file:
* in "add new changekey"-functions:
- change type of param 'type' (int -> GB_TYPES)
- fix callers where needed.
10 lines of code changed in 2 files:
* allow 1 or 3 vectorizations
* fixes linux RELEASE build
2 lines of code changed in 1 file:
* reintegrates 'split' into 'trunk'
- implemented beta version of alignment splitter
* adds: log:branches/split@19077:19099
3 lines of code changed in 2 files:
* fix vectorize-checks for gcc 5.4
2 lines of code changed in 2 files:
* fix vectorize-checks for gcc 5.5
2 lines of code changed in 2 files:
* fix vectorize-checks for gcc 7.x-series
1 lines of code changed in 1 file:
* fix vectorize-checks for gcc 8.x-series
4 lines of code changed in 2 files:
* fix vectorize-checks for gcc 9.x-series
5 lines of code changed in 3 files:
* fixed LOOP_VECTORIZED expressions that used '*'-count (for gcc 10.x-series).
6 lines of code changed in 3 files:
* include {{{rpc/types.h}}} under OSX only (fixes compilation under SuSE Leap 15.3).
Notes:
* originally introduced with [14000]
* merged to trunk with [14007]
7 lines of code changed in 1 file:
* reintegrates 'progress' into 'trunk'
- implements #789
* adds: log:branches/progress@18885:18958
35 lines of code changed in 1 file:
* add {{{GB_test_delete_possible}}}:
- tests TA + returns security error.
- use it in {{{GB_delete}}} + {{{GB_set_temporary}}}.
* test user has security to delete tree **before** copying the tree (which may take some time).
43 lines of code changed in 4 files:
* when called with flag==3 now count marked species in
- GBT_mark_all+GBT_mark_all_that
- mark_species_in_tree+mark_species_in_tree_that
* add count feature to all mark menus + submenus
- generate reports for different set of counted species.
- show top-area hint only once per arb session.
25 lines of code changed in 2 files:
* partial merge from 'stable' into 'trunk'
* adds: log:branches/stable@18903:18906
2 lines of code changed in 2 files:
* add deadlock warning to callback loop in commit_transaction.
10 lines of code changed in 1 file:
* ignore SIGPIPE while ArbDBWriter exists
- arb does no longer terminate, but instead prints error, when pipe breaks, e.g.:
{{{
19:01.38 While writing '/home/user/data/test with space.arb~': Broken pipe
(close reports: pipe writing to
file='/home/user/data/test with space.arb~'
using cmd='xz > /home/user/data/test with space.arb~'
failed with exitcode=1 (broken pipe? corrupted archive?)
(res=256, exited=1, signaled=0, status=1))
}}}
11 lines of code changed in 2 files:
* avoid crash while saving arb database (see #840)
- mark loc where SIGPIPE occurred.
- report an error when compression is enabled and filename contains unwanted characters.
3 lines of code changed in 1 file:
* reintegrates 'help' into 'trunk'
- relocate help sources
* adds: log:branches/help@18763:18780
13 lines of code changed in 2 files:
* eliminate obsolete {{{GBT_read_name}}} from perl interface
- To fix your skript you have to replace {{{BIO::read_name}}} by
* {{{BIO::get_name}}} or
* {{{BIO::get_name_or_description}}} (=1:1 replacement).
2 lines of code changed in 2 files:
* also rename overloaded {{{GB_path_in_ARBHOME()}}} -> {{{GB_concat_path_in_ARBHOME()}}}.
- Note: before, simply removing the static modifier did break the perl interface.
11 lines of code changed in 2 files:
* fix unwanted export of overloaded functions to perl interface:
- GBT_log_to_tree_remark()
- GB_path_in_ARBLIB()
11 lines of code changed in 5 files:
* remove trailing whitespace from c source.
96 lines of code changed in 23 files:
* change many WARN_TODO triggered warnings into todo markers.
13 lines of code changed in 9 files:
* fix crash when previewing printout on OSX (thx to jan)
14 lines of code changed in 1 file:
(1398 more)