Directory PRIMER_DESIGN/

Directory Created:
2001-02-16 15:16
Total Files:
20
Deleted Files:
3
Lines of Code:
3032

[root]/PRIMER_DESIGN

Lines of Code

PRIMER_DESIGN/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 332 (100.0%) 8398 (100.0%) 25.2
westram 281 (84.6%) 6874 (81.9%) 24.4
foerster 47 (14.2%) 1519 (18.1%) 32.3
meierh 1 (0.3%) 3 (0.0%) 3.0
epruesse 1 (0.3%) 1 (0.0%) 1.0
boehnel 1 (0.3%) 1 (0.0%) 1.0
baderk 1 (0.3%) 0 (0.0%) 0.0

Most Recent Commits

westram 2019-04-01 17:41 Rev.: 17724


* partial merge from 'fts' into 'trunk'
- {{{ConfigMapping}}}:
* cleanup
* add missing tests
* fix config bug: trailing backslash at end of values did cause wrong read of data
* adds: log:branches/fts@17718:17723

2 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+2)
westram 2018-07-23 16:52 Rev.: 17262


* partial merge from 'group' into 'trunk'
- fixes to arb_progress
* adds:
- log:branches/group@17191:17218,17220:17260
- log:branches/progress@17195:17216,17218:17259

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: PRD_Design.cxx (+1 -1)
westram 2017-11-28 19:22 Rev.: 16766


* reintegrates 'gcc' into 'trunk'
- mostly cosmetics changes
* adds: log:branches/gcc@16655,16741:16743,16752:16765

69 lines of code changed in 10 files:

  • PRIMER_DESIGN: PRD_Design.cxx (+27 -50), PRD_Globals.hxx (+3 -6), PRD_Item.cxx (+5 -10), PRD_Node.cxx (+6 -12), PRD_Node.hxx (+3 -3), PRD_Pair.cxx (+5 -10), PRD_Range.cxx (+4 -8), PRD_SearchFIFO.cxx (+12 -22), PRD_SequenceIterator.cxx (+4 -8), primer_design.cxx (-1)
westram 2017-11-28 18:09 Rev.: 16763


* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751

119 lines of code changed in 6 files:

  • PRIMER_DESIGN: PRD_Design.cxx (+42 -42), PRD_Item.cxx (+1 -1), PRD_Node.cxx (+5 -5), PRD_Pair.cxx (+8 -8), PRD_SearchFIFO.cxx (+43 -43), primer_design.cxx (+20 -21)
westram 2017-08-09 14:59 Rev.: 16223


* reintegrates 'cover' into 'trunk'
- fixes compilation with COVERAGE
* ARB perl module failed to load (since [13739])
* linking executables broken (apparently since [14038])
* adds: log:branches/cover@16213:16222

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+1 -1)
westram 2016-08-11 11:05 Rev.: 15176


* reintegrates 'fixres' into 'trunk'
- fixes #715
* adds: log:branches/fixres@15127:15175

14 lines of code changed in 3 files:

  • PRIMER_DESIGN: Makefile (+4), PRD_Item.cxx (+5 -2), PRD_Pair.cxx (+5 -4)
westram 2016-04-16 14:52 Rev.: 14731


* mark code binding callbacks to non-button-widgets (probably incomplete; see #559 for details)

2 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+2 -2)
westram 2015-11-04 10:57 Rev.: 14453


* do not cast AW_POPDOWN

2 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+2 -2)
westram 2015-10-28 19:12 Rev.: 14434


* use typed callbacks in AWTI, PRIMER_DESIGN, SEQ_QUALITY and REFENTRIES

17 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+17 -18)
westram 2015-07-31 17:33 Rev.: 14122


* document primer design result window

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+1 -1)
westram 2015-04-03 17:51 Rev.: 13665


* added less custom ways to install config-managers:
- using fixed mapping ({{{AWT_config_mapping_def}}})
- using a setup-callback for {{{AWT_config_definition}}}
* replaced all config-managers by less custom versions where possible. Exceptions:
- NDS (does some custom conversion from older data-format)
- merge-tool/gene-species (uses user-defined definitions-sets)

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+1 -11)
westram 2015-04-03 13:27 Rev.: 13662


* replace manual/widget-bound by awar-bound update-callbacks (motivation: eliminate custom call in {{{primer_design_restore_config}}})
* display memory estimation non-editable
* allow explicit primer length (no reason to insist on a length-range>1)

56 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+56 -57)
westram 2015-04-03 13:20 Rev.: 13661


- fix progress counter

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: PRD_Design.cxx (+1 -1)
westram 2015-01-23 15:19 Rev.: 13443


* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+1 -1)
westram 2014-09-11 13:27 Rev.: 12848


* reintegrates 'fix' into 'trunk'
- removes calls to {{{aw_string_selection}}} and {{{aw_string_selection2awar}}} (implementing another step for #179)
* adds:
- log:branches/fix@12839:12847

11 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+11 -11)
epruesse 2014-09-02 17:51 Rev.: 12815

fix common typos reported by lintian
- splitted -> split (irregular verb)
- ressources -> resources
- explicitely -> explicitly

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+1 -1)
westram 2014-09-01 14:10 Rev.: 12803


* merge from 'alilink' into 'trunk'
* adds:
- log:branches/alilink@12801:12802

2 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+2 -2)
westram 2014-05-09 15:43 Rev.: 12186


* AW_window::create_selection_list expects new parameter 'fallback2default'
- change calls outside WINDOW (pass 'true' everywhere, which previous default behavior in gtk)

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+1 -1)
westram 2014-04-25 11:04 Rev.: 12085


* use typed callbacks in
- PROBE_DESIGN (complete)
- AWT (incomplete; several need deeper changes)

4 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+4 -4)
westram 2014-01-28 18:13 Rev.: 11512


* merge [11502,11504,11505] from 'dist' into 'trunk'
* adds:
- log:branches/dist@11502,11504:11505

3 lines of code changed in 2 files:

  • PRIMER_DESIGN: primer_design.cxx (+2 -3), primer_design.hxx (+1 -1)
westram 2014-01-10 20:16 Rev.: 11464


- un-dummy-fied transaction (renames only)

3 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+3 -3)
westram 2013-11-27 19:55 Rev.: 11248


- need cb.h in awt_sel_boxes.hxx

0 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (-1)
westram 2013-11-03 15:42 Rev.: 11060


* reintegrates 'ptsfix' into 'trunk':
* adds:
- log:branches/ptsdump@8966:9000
- log:branches/ptsfix@8965:9012,9014:9017,9019:9023,9025:9046,9048:9089,9091:9114,9116:9132,9134:9139,9141:9145,9147:9151,9153:9158,9160:9379,9381:11059
- log:branches/ptsstartup@9160:9235,9237:9278,9280:9336,9339:9361,9363:9446
- log:branches/ptsundef@9061:9358

2 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+2 -2)
westram 2013-11-02 17:41 Rev.: 11034


* depends for [11033]

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+1)
westram 2013-10-31 18:14 Rev.: 11007


* prototype for GBK_terminate differed between arb_core.h and arb_msg.h

6 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+6)
westram 2013-10-31 16:40 Rev.: 11002


* 'class { public' -> struct

2 lines of code changed in 1 file:

  • PRIMER_DESIGN: PRD_Globals.hxx (+2 -4)
westram 2013-10-31 15:10 Rev.: 10996


* use cflags before cxxflags

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+1 -1)
westram 2013-10-30 16:58 Rev.: 10974


* renamed include variables

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+1 -1)
westram 2013-10-29 13:55 Rev.: 10956


* made A_CC and A_CXX consistent
- A_CXX previously contained cxxflags
- cxxflags are now passed down and used separately

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+1 -1)
westram 2013-10-29 13:23 Rev.: 10955


- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+1 -1)
westram 2013-10-29 12:43 Rev.: 10954


- document mechanism used by ARB to export variables to submakefiles
- document most important variables

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+1 -1)
westram 2013-10-21 14:16 Rev.: 10863


* replaced usage of untyped AW_POPUP_HELP

2 lines of code changed in 1 file:

  • PRIMER_DESIGN: primer_design.cxx (+2 -2)
westram 2013-09-09 16:36 Rev.: 10563


- include downcast.h from arbdbt.h
(this break C++11 compilation, i.e. gcc4.8 or newer)[[BR]]
amendment:
* also broke compilation on ubuntu 13.04 and with gcc 4.7.3 (due to nameclash with boost)

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+1)
westram 2013-07-04 16:49 Rev.: 10212


* depends for recent patches

3 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+3)
westram 2013-06-04 15:20 Rev.: 10113


* changed dynamic value-initializations into default-initializations
- i believe/know they were used with ignorance of [http://stackoverflow.com/questions/620137/do-the-parentheses-after-the-type-name-make-a-difference-with-new?answertab=active#tab-top ctor-behavior].

2 lines of code changed in 1 file:

  • PRIMER_DESIGN: PRD_Design.cxx (+2 -2)
westram 2013-02-13 13:24 Rev.: 9575


- effect of [9574] (comments only)

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+1 -1)
westram 2013-02-09 13:52 Rev.: 9521


- updated depends for [9520]

14 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+14)
westram 2013-02-09 12:16 Rev.: 9516


- reintegrated branch 'cxx11'

2 lines of code changed in 1 file:

  • PRIMER_DESIGN: Makefile (+2)
westram 2012-09-27 15:44 Rev.: 8964


* leave(s) -> leaf(s)

1 lines of code changed in 1 file:

  • PRIMER_DESIGN: PRD_Design.cxx (+1 -1)
westram 2012-09-19 10:49 Rev.: 8902


* fixed cppcheck warnings

38 lines of code changed in 5 files:

  • PRIMER_DESIGN: PRD_Design.cxx (+4 -6), PRD_Design.hxx (+9 -1), PRD_Node.cxx (+1 -1), PRD_SearchFIFO.cxx (+7 -11), primer_design.cxx (+17 -17)

(109 more)

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