Directory SL/ALIVIEW/

Total Files:
4
Deleted Files:
0
Lines of Code:
177

[root]/SL/ALIVIEW

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SL/ALIVIEW/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
westram 29 (100.0%) 54 (100.0%) 1.8

Most Recent Commits

westram 2017-11-28 18:09 Rev.: 16763


* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751

16 lines of code changed in 2 files:

  • SL/ALIVIEW: AliView.cxx (+15 -9), AliView.hxx (+1 -1)
westram 2015-01-23 15:19 Rev.: 13443


* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

2 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+2 -2)
westram 2014-04-30 14:36 Rev.: 12138


* reintegrates 'fix' into 'trunk'
- fixes #522
* adds:
- log:branches/fix@12058:12137

1 lines of code changed in 1 file:

  • SL/ALIVIEW: AliView.cxx (+1)
westram 2013-10-31 18:14 Rev.: 11007


* prototype for GBK_terminate differed between arb_core.h and arb_msg.h

1 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+1)
westram 2013-10-31 15:10 Rev.: 10996


* use cflags before cxxflags

1 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+1 -1)
westram 2013-10-30 16:58 Rev.: 10974


* renamed include variables

2 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+2 -2)
westram 2013-10-29 13:55 Rev.: 10956


* made A_CC and A_CXX consistent
- A_CXX previously contained cxxflags
- cxxflags are now passed down and used separately

1 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+1 -1)
westram 2013-10-29 13:23 Rev.: 10955


- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

2 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+2 -2)
westram 2013-10-29 12:43 Rev.: 10954


- document mechanism used by ARB to export variables to submakefiles
- document most important variables

1 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+1 -1)
westram 2013-02-13 13:24 Rev.: 9575


- effect of [9574] (comments only)

1 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+1 -1)
westram 2013-02-09 13:52 Rev.: 9521


- updated depends for [9520]

2 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+2)
westram 2011-06-10 15:50 Rev.: 7623


- merge from dev [7450] [7452] [7456] [7457] [7458] [7459] [7460] [7461] [7464] [7465] [7466] [7467] [7468] [7469] [7482]
* tweaked compiler options
- activated -Weffc++
* postfilter warnings where Scott Meyers' advices are too general.
- base classes should not always have virtual destructors, since that renders tiny classes useless and
- members should not always be initialized via initialization list, since that often violates the DRY principle
* fix gcc's inability to detect that Noncopyable implements a private copy-ctor and op=
* this slows down complete ARB recompilation by ~5%
- added -Wold-style-cast (inactive)
- removed -Wno-non-template-friend added in [7447]
* postcompile.pl
- added option --original to show unmodified compiler output
* declared op= for classes which had a copy-ctor
* moved op= macros to arbtools.h
* derived classes containing pointers from Noncopyable (use Noncopyable virtually) or
* made them copyable if needed (awt_mask_item, KnownDB, Code, AWT_registered_itemtype, GEN_gene, !PosGene, !PartialSequence, !PlugIn, Range, Convaln_exception)
* other related changes
- user mask destruction working now

5 lines of code changed in 2 files:

  • SL/ALIVIEW: AliView.hxx (+4), Makefile (+1)
westram 2011-02-23 14:37 Rev.: 7183


merges [7084] [7086] [7087] [7088] from refactor
* added CORE lib
- added arb_progress (unused yet)
- moved some code from ARBDB to CORE
* added tests to CORE lib
* generate_all_links.sh
- now tests link targets
- able to replace links (if link stays the same, but target changes)
* fixed perl interface
- link with libCORE
- DRYed LINUX.PL and DARWIN.PL
- added wrapper functionality (ARBDB->CORE). Functions starting with GBC_ are wrappers for code that moved into libCORE (which is NOT xsub'd)

0 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (-2)
westram 2010-09-18 17:20 Rev.: 6866


* compiler-messages (merges [6848] [6849] [6850] [6851] [6853] [6855] [6856] [6860] from refactor)
- errors get listed before warnings
- pipe all compilations through postcompile filter
- optionally filter warnings and/or stop at 1st error (controllable by POST_COMPILE in ARB Makefile)
- no warnings for ptpan (too many; version in trunk is outdated)

2 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+2 -2)
westram 2010-09-09 22:49 Rev.: 6817


- depends for [6816]

1 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+1)
westram 2010-09-09 20:25 Rev.: 6814


* depends updated for [6812] + [6813]

1 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+1)
westram 2010-03-03 15:00 Rev.: 6490


* moved a few types to arbdb_base.h
* only use arbdb_base.h or arbdb.h where possible
* global included cleanup
* added MBI headers to many files
* moved SQ_ambiguities.SQ_count_ambiguities() to separate object

2 lines of code changed in 2 files:

  • SL/ALIVIEW: AliView.hxx (+2 -2), Makefile (-7)
westram 2010-02-17 10:30 Rev.: 6448


- added library dependency declarations

4 lines of code changed in 1 file:

  • SL/ALIVIEW: needs_libs (new 4)
westram 2010-01-27 10:48 Rev.: 6385


- removed trailing whitespace

2 lines of code changed in 3 files:

  • SL/ALIVIEW: AliView.cxx (+1 -1), AliView.hxx (+1 -1)
westram 2010-01-21 17:49 Rev.: 6366


* fixed whitespace (scripted)

3 lines of code changed in 2 files:

  • SL/ALIVIEW: AliView.cxx (new)
westram 2010-01-07 15:07 Rev.: 6331


* removed GB_strdup
* moved freeset, nulldup, etc to own header (dupstr.h)
* added freenull
- replacement for freeset(var,NULL)
- freeset is a template now and does no longer work with NULL/0
- replaced all occurrances

1 lines of code changed in 1 file:

  • SL/ALIVIEW: Makefile (+1)
westram 2009-12-30 20:56 Rev.: 6318


* ARBDB
- compiles as C++ (no longer compiled as plain C)
- removed ARBDB2 + ARBDBS
- removed rotten C++-wrappers (ARBDBPP)
- generates special header for perl-interface to reduce dependencies (ad_p_prot.h)
* removed (ARBDB)
- gb_search_enum (merged with GB_TYPES)
* renamed (ARBDB)
- gbs_malloc_copy -> GB_memdup
- gb_search_types -> GB_SEARCH_TYPE + renamed enum-members
* tweaked perl interface
- code in ARBDB is now able to 'die' correctly (see GBP_croak_function)
- compiles as C++
- wrote generic functions for enum <-> string conversion (perl uses strings for enum values)
- added needed conversion functions
- removed handcoded xsubs (now all are generated by arb_proto_2_xsub - nevertheless, it's still possible to define xsubs manually)
- ARB::find and ARB::find_string (3rd parameter needs different values, only one file affected: PERL_SCRIPTS/GENOME/GI.pm - fixed)
- removed all functions using GBQUARK from perl interface
* perl interface generator (arb_proto_2_xsub)
- completely rewritten
- does automatic type conversion (expecting that the needed functions are defined in ARBDB/adperl.c)
* prototype generator
- compiles as C++
- switch -F accept's '!^' as beginning-of-name expression
* removed ARB_EDIT
- moved naligner interface code to EDIT4

3 lines of code changed in 2 files:

  • SL/ALIVIEW: Makefile (+3)
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