[root]/lib/import
nonformats
(7 files, 783 lines)
Author | Changes | Lines of Code | Lines per Change |
---|---|---|---|
Totals | 243 (100.0%) | 6739 (100.0%) | 27.7 |
westram | 211 (86.8%) | 5908 (87.7%) | 28.0 |
oldcode | 22 (9.1%) | 642 (9.5%) | 29.1 |
murban | 8 (3.3%) | 187 (2.8%) | 23.3 |
yadhu | 2 (0.8%) | 2 (0.0%) | 1.0 |
* reintegrates 'io' into 'trunk'
- implements #691
* adds: log:branches/io@16436:16510,16513:16514,16517,16533:16535,16537:16563
20 lines of code changed in 5 files:
* reintegrates 'customize' into 'trunk'
- implements #263
* adds:
- log:branches/customize@11950,11956:11967
0 lines of code changed in 24 files:
* Again allow display of hidden files in filter list (reverts part of [6082])
* renamed all rarely-used import filters into .importfilter
- user has to click on 'Show hidden files' to show these filters or to use them in AUTODETECT
* moved a few sub-filters to nonformats
* added .fasta_contextual_data_1_03.ift (thx to Renzo, Joerg and Frank Oliver)
* added fasta_wacc import/export filters (thx to Harald)
1340 lines of code changed in 52 files:
* import filters mostly SILVA compatible (thx to Frank Oliver)
* moved feature-table into separate filter which is included by longebi.ift and longgenbank.ift
* added AUTOTAGging (commented out)
55 lines of code changed in 3 files:
* Errors about undefined variables in inport-formats had some meaning for the writer of the input-format, but none for the user of the format.
* new command IFNOTSET for ift
- each 'SETVAR x' expects a corresponding 'IFNOTSET x msg' (and vv.)
* undef error prints reason defined by IFNOTSET
* fixed import filters
* checked feature table sections in longebi.ift and longgenbank.ift for similarity
- typo 'secimen_voucher'
* updated help
18 lines of code changed in 2 files:
* new commands for import filters (WRITE_INT, WRITE_FLOAT)
* Silva-Import-Filters write start, stop, insdc, version as ints
* see ticket #44
thx to fog and elmar
23 lines of code changed in 2 files:
- TAB-Ex
1349 lines of code changed in 35 files:
- fixed path to perl skripts
5 lines of code changed in 5 files:
added functions for protein structure comparison; added import filters and perl script for dssp files; added menu entry in EDIT4 for choosing the active protein structure SAI
181 lines of code changed in 7 files:
- read with gaps
1 lines of code changed in 1 file:
- fixed auto-detection
1 lines of code changed in 1 file:
- dssp import filter
6 lines of code changed in 1 file:
- obsolete
0 lines of code changed in 3 files:
- renamed (_multi)
0 lines of code changed in 2 files:
- genbank importer (silva-style)
134 lines of code changed in 1 file:
- corrections from fog
3 lines of code changed in 1 file:
- basic embl import filter
152 lines of code changed in 1 file:
- calls converter + nonformats/longgenbank.ift (like ebi.ift)
4 lines of code changed in 2 files:
- 'medline'->'medline_id', 'gene_pos'->'nuc_rp', 'pubmed'->'pubmed_id'
17 lines of code changed in 8 files:
- fix from WL
20 lines of code changed in 2 files:
- old version of ebi.ift
3 lines of code changed in 1 file:
- prefilter input through embl_gen_long_features.pl and pass to nonformats/longebi.ift
4 lines of code changed in 2 files:
file has been added to release tree in 2001, but never was added to cvs
2 lines of code changed in 1 file:
- old version
142 lines of code changed in 1 file:
- new version
174 lines of code changed in 1 file:
removed outdated versions
0 lines of code changed in 3 files:
old versions
225 lines of code changed in 2 files:
- like fasta.ift, but keeps alignment
23 lines of code changed in 1 file:
- new ift's from WL
1278 lines of code changed in 4 files:
don't remember where this came from
78 lines of code changed in 1 file:
new filters from jack
284 lines of code changed in 3 files:
- changes from jack
131 lines of code changed in 3 files:
* lib/import/*.ift: - commented out DONT_GEN_NAMES
* ad_transpro.cxx: - removed old version of arb_transdna()
* AWTI_import.cxx: - indented
10 lines of code changed in 9 files:
removed 'SEQUENCECOLUMN 0' (did nothing)
3 lines of code changed in 13 files:
filters were dangerous (simply skipping all infront of column 10)
now it just removes spaces and digits
10 lines of code changed in 3 files:
*** empty log message ***
2 lines of code changed in 2 files:
some user send this filter
86 lines of code changed in 1 file:
some bugfixes for import/export
1 lines of code changed in 1 file:
fixed needed for XML tree export
3 lines of code changed in 1 file:
*** empty log message ***
2 lines of code changed in 1 file:
(4 more)