Directory SL/ROOTED_TREE/

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westram 2015-03-29 11:47 Rev.: 13625

* reintegrates 'pars' into 'trunk'
- fixes #528, #609, #620, #631, #633, #640, #641
- implements #619, #627
* adds:
- log:branches/addtest@13123:13260,13523:13551,13570
- log:branches/check@13365:13375,13450:13457
- log:branches/check2@13458:13465
- log:branches/fix@13522:13588
- log:branches/fixres@13270:13277,13279:13293,13295:13326
- log:branches/pars@12938:13280,13282:13325,13327:13387,13389:13527,13530:13624

0 lines of code changed in 3 files:

• SL/ROOTED_TREE: Makefile (del), RootedTree.cxx (del), RootedTree.h (del)

westram 2015-01-23 14:19 Rev.: 13443

* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

1 lines of code changed in 2 files:

• SL/ROOTED_TREE: Makefile (new)

westram 2014-04-11 11:56 Rev.: 11990

* full update from child 'fix' into 'trunk'
- fixes #511
* adds:
- log:branches/fix@11986:11989

7 lines of code changed in 1 file:

• SL/ROOTED_TREE: RootedTree.h (+7 -1)

westram 2014-03-25 10:53 Rev.: 11888

- highlight differences in production code triggered by build-flag 'UNIT_TESTS'

2 lines of code changed in 1 file:

• SL/ROOTED_TREE: RootedTree.h (+2 -2)

westram 2014-02-04 16:16 Rev.: 11560

* reintegrates 'tree' into 'trunk'
* adds:
- log:branches/tree@11556:11559

7 lines of code changed in 2 files:

• SL/ROOTED_TREE: RootedTree.cxx (+1 -1), RootedTree.h (+6 -1)

westram 2014-01-28 17:16 Rev.: 11513

* reintegrates 'dist' into 'trunk'
- implements #457 + #458
* adds:
- log:branches/dist@11501,11503,11506:11512

0 lines of code changed in 2 files:

• SL/ROOTED_TREE: RootedTree.cxx (-4), RootedTree.h (-5)

westram 2014-01-20 16:08 Rev.: 11488

* reintegrates 'tree' into 'trunk'
- implements #417 (multifurcate tree)
- tree display
* adds MULTIFURC MODE
* reordered modes (synchronizes NTREE and PARSIMONY)
- branch analysis
* display number of multifurcations in 'mark long branches'
* display "in-tree-distance" and "per-species-distance"
- added function to toggle '100%' bootstraps
- document bug in GBT_remove_leafs (#452)
* adds:
- log:branches/tree@11425:11487

304 lines of code changed in 2 files:

• SL/ROOTED_TREE: RootedTree.cxx (+222 -8), RootedTree.h (+82 -8)

westram 2014-01-04 13:48 Rev.: 11423

* reintegrates 'tree' into 'trunk':
- topology ordering (beautify trees):
* new orders for radial trees
* order tree according to other tree (implements #445)
- tweaked 'Move node info' / 'Compare topology' (implements #450)
* write log entry to tree comment
* verbose output into logfile
* updated help and GUI
* adds:
- log:branches/tree@11403:11422

29 lines of code changed in 4 files:

• SL/ROOTED_TREE: RootedTree.cxx (new), RootedTree.h (+11 -3)