Directory GDE/FASTDNAML/

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westram 2023-08-11 13:40 Rev.: 19480

* reintegrates 'gde' into 'trunk'
* adds: log:branches/gde@19460:19479

8 lines of code changed in 2 files:

• GDE/FASTDNAML: fastDNAml.c (+4 -4), fastDNAml.h (+4 -4)

westram 2023-08-05 14:34 Rev.: 19456

* fix builds of AxML, FASTDNAML + SUPPORT
- mostly fixed by add missing includes.
- had to change code order to avoid otherwise required definition of protytypes in SUPPORT.

5 lines of code changed in 2 files:

• GDE/FASTDNAML: fastDNAml.c (+2), fastDNAml.h (+3 -6)

westram 2023-08-05 13:40 Rev.: 19446

* introduce {{{onlyC_flags}}}
- flags used for C compilation only.
- similar to {{{cxxflags}}} (references added).
- pass down onlyC_flags into AxML, CLUSTAL, CLUSTALW, FASTDNAML, FASTTREE, GL, MrBAYES, PHYLIP, PHYML*, RAxML, SINA(unused), SOURCE_TOOLS, SUPPORT, TOOLS, TREEGEN + TREEPUZZLE.
- set flags to {{{-Werror-implicit-function-declaration}}}
* error is only effective in a small part of these modules.
* TODO: need to activate warnings -> will activate the error as well.

2 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+2 -2)

westram 2018-10-17 11:00 Rev.: 17478

* reintegrates 'svalues' into 'trunk'
- implements #614
* adds: log:branches/svalues@17357:17419,17428:17464,17469,17471:17477

1 lines of code changed in 1 file:

• GDE/FASTDNAML: fastDNAml.c (+1 -1)

westram 2015-01-23 15:19 Rev.: 13443

* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

1 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+1 -1)

westram 2013-10-30 16:58 Rev.: 10974

* renamed include variables

1 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+1 -1)

westram 2013-10-29 13:23 Rev.: 10955

- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

2 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+2 -2)

westram 2013-02-13 13:24 Rev.: 9575

- effect of [9574] (comments only)

1 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+1 -1)

westram 2010-09-18 17:20 Rev.: 6866

* compiler-messages (merges [6848] [6849] [6850] [6851] [6853] [6855] [6856] [6860] from refactor)
- errors get listed before warnings
- pipe all compilations through postcompile filter
- optionally filter warnings and/or stop at 1st error (controllable by POST_COMPILE in ARB Makefile)
- no warnings for ptpan (too many; version in trunk is outdated)

1 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+1 -1)

westram 2009-05-15 09:29 Rev.: 5909

* use strchr and strstr from standard lib

3 lines of code changed in 1 file:

• GDE/FASTDNAML: fastDNAml.c (+3 -2)

westram 2009-04-29 13:20 Rev.: 5872

* Changed variable transfer to sub-makefiles
- most variables are now exported via environment (using SOURCE_TOOLS/export2sub or AISC/export2sub)
- only variables that contain different values for different sub-makefile-calls are passed by cl (e.g. cflags, MAIN)
- changed flavour of exported variables (recursively expanded -> simply expanded variables). Please use VAR := VALUE in Makefiles (not VAR = VALUE). See http://www.gnu.org/software/make/manual/html_node/Flavors.html#Flavors for details
* removed/fixed all undefined variables in Makefiles (using 'make --warn-undefined-variables')
* changed names of compile-logs generated in GDE subdir
* added target 'xmlin' (broken, print warning)

1 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+1 -1)

baderk 2008-07-16 17:24 Rev.: 5458

Removed .cvsignore files from repository. Hopefully this time all svn:ignore flags were set right.

0 lines of code changed in 1 file:

• GDE/FASTDNAML: .cvsignore (del)

westram 2007-05-30 15:39 Rev.: 4635

- added 'clean'

3 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+3)

westram 2004-01-23 19:08 Rev.: 2338

fixed and reformatted dependencies (using fix_depends.pl)

3 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+3)

westram 2003-12-03 19:37 Rev.: 2263

- removed doc generation (doc is picked up by GDEHELP Makefile)

3 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+3 -14)

westram 2003-08-09 14:00 Rev.: 1617

- updated dependencies for all Makefiles
- rewrote dependency generation code. Only real changes
propagate into Makefiles - so it does no longer hurt to
call 'make depends' in ARB directory!

12 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+12 -4)

westram 2003-05-15 14:22 Rev.: 1403

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1 lines of code changed in 1 file:

• GDE/FASTDNAML: .cvsignore (new 1)

westram 2002-07-17 13:39 Rev.: 777

fastdnaml 1.2.2

309 lines of code changed in 3 files:

• GDE/FASTDNAML: GNU_GENERAL_PUBLIC_LICENSE (new 258), Makefile (+8 -4), license (new 43)

westram 2002-07-17 13:38 Rev.: 776

deleted old versions

0 lines of code changed in 6 files:

• GDE/FASTDNAML: fastDNAml_1_0.h (del), fastDNAml_1_0_6.c (del), fastDNAml_1_2_1.c (del), fastDNAml_1_2_1.h (del), fastDNAml_doc_1.0.txt (del), fastDNAml_doc_1.2.txt (del)

westram 2002-07-17 13:36 Rev.: 775

original version 1.2.2

6091 lines of code changed in 3 files:

• GDE/FASTDNAML: fastDNAml.c (new 4955), fastDNAml.doc (new 899), fastDNAml.h (new 237)

westram 2002-07-17 13:35 Rev.: 774

* arb_help_prefix.txt: - used to generate fastdnaml.hlp

4 lines of code changed in 1 file:

• GDE/FASTDNAML: arb_help_prefix.txt (+4 -1)

westram 2002-07-16 12:02 Rev.: 753

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0 lines of code changed in 2 files:

• GDE/FASTDNAML: fastDNAml_doc.txt (del), fastDNAml_doc_1.0.txt (new)

westram 2002-07-16 12:02 Rev.: 752

* arb_help_prefix.txt: - used to generate fastdnaml.hlp

19 lines of code changed in 1 file:

• GDE/FASTDNAML: arb_help_prefix.txt (new 19)

westram 2002-07-16 12:00 Rev.: 751

builds $ARBHOME/GDEHELP/fastdnaml.help

11 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+11 -2)

westram 2002-05-29 17:46 Rev.: 597

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1 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+1 -2)

yadhu 2002-05-29 11:53 Rev.: 593

makefile dependency generation fixed for GDE

2 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+2 -10)

westram 2002-05-23 09:15 Rev.: 557

now using version 1.2.1
(old version remains here until somebody deletes it :)

913 lines of code changed in 4 files:

• GDE/FASTDNAML: Makefile (+12 -9), fastDNAml_1_2_1.c (new), fastDNAml_1_2_1.h (new), fastDNAml_doc_1.2.txt (new 901)

jobb 2001-05-04 14:57 Rev.: 183

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22 lines of code changed in 4 files:

• GDE/FASTDNAML: Makefile (new 22), fastDNAml_1_0.h (new), fastDNAml_1_0_6.c (new), fastDNAml_doc.txt (new)

jobb 2001-05-04 12:35 Rev.: 179

removed old version (1.0.4) of fastdnaml

0 lines of code changed in 4 files:

• GDE/FASTDNAML: Makefile (del), fastDNAml_1_0.h (del), fastDNAml_1_0_4.c (del), fastdnaml.c (del)

westram 2001-01-11 16:58 Rev.: 83

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1 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+1 -7)

meierh 2001-01-11 16:24 Rev.: 80

haralds checkin

7 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+7 -1)

westram 2001-01-04 16:36 Rev.: 68

Updated dependencies

9 lines of code changed in 1 file:

• GDE/FASTDNAML: Makefile (+9 -1)

oldcode 2000-11-23 11:41 Rev.: 2

Initial revision

14 lines of code changed in 4 files:

• GDE/FASTDNAML: Makefile (new 14), fastDNAml_1_0.h (new), fastDNAml_1_0_4.c (new), fastdnaml.c (new)