Directory READSEQ/

Lines of Code

Developers

Most Recent Commits

westram 2023-08-05 13:15 Rev.: 19452

* get rid of {{{tmpnam()}}}.

18 lines of code changed in 2 files:

• READSEQ: readseq.c (+17 -9), ureadseq.h (+1)

westram 2023-08-05 13:13 Rev.: 19451

* fix a bug (and silence {{{-Wparentheses}}}).
* fix other warnings

22 lines of code changed in 2 files:

• READSEQ: readseq.c (+21 -20), ureadseq.c (+1 -3)

westram 2023-08-05 12:53 Rev.: 19450

* keep {{{-W -Wall}}} in READSEQ => build does fail due to implicit-function-declaration.
* include {{{stdlib.h}}} for missing prototypes => fixes build error.

2 lines of code changed in 2 files:

• READSEQ: Makefile (+1 -1), readseq.c (+1)

westram 2023-08-05 12:40 Rev.: 19446

* introduce {{{onlyC_flags}}}
- flags used for C compilation only.
- similar to {{{cxxflags}}} (references added).
- pass down onlyC_flags into AxML, CLUSTAL, CLUSTALW, FASTDNAML, FASTTREE, GL, MrBAYES, PHYLIP, PHYML*, RAxML, SINA(unused), SOURCE_TOOLS, SUPPORT, TOOLS, TREEGEN + TREEPUZZLE.
- set flags to {{{-Werror-implicit-function-declaration}}}
* error is only effective in a small part of these modules.
* TODO: need to activate warnings -> will activate the error as well.

1 lines of code changed in 1 file:

• READSEQ: Makefile (+1 -1)

westram 2023-08-05 12:27 Rev.: 19443

* fix use of {{{gets()}}} (globally):
- provide a drop-in replacement for {{{gets()}}}
* only requires to specify buffersize.
- use {{{gets_noOverflow()}}} in READSEQ, SUPPORT, CLUSTAL + CLUSTALW.
* adapt {{{getstr()}}}

12 lines of code changed in 2 files:

• READSEQ: Makefile (+1), readseq.c (+11 -8)

westram 2021-09-15 12:48 Rev.: 18729

* eliminate trailing whitespace from Makefiles.

1 lines of code changed in 1 file:

• READSEQ: Makefile (+1 -1)

westram 2021-09-15 12:31 Rev.: 18723

* remove .c rules.
* add .c suffix (in SOURCE_TOOLS).

1 lines of code changed in 1 file:

• READSEQ: Makefile (+1 -1)

westram 2016-12-13 11:33 Rev.: 15411

* fix warnings caused by converted documentation
- conversion of html docs
* remove lynx-"<HR/>"-output (arb-help-converter tries to add that to paragraphs)
* add empty line after "generated from" message
- manual reflow of one problematic section in {{{READSEQ/Formats}}}

42 lines of code changed in 1 file:

• READSEQ: Formats (+42 -25)

westram 2015-01-23 14:19 Rev.: 13443

* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

1 lines of code changed in 1 file:

• READSEQ: Makefile (+1 -1)

westram 2014-03-18 15:21 Rev.: 11805

* export 'LINUX' and 'REDHAT' to submakefiles
* use ifeq instead of ifdef (completes [11804])

1 lines of code changed in 1 file:

• READSEQ: Makefile (+1 -1)

westram 2014-02-15 15:51 Rev.: 11626

* reintegrates 'fix' into 'trunk'
- implements: #158
- fixes: #386, #463, #459
* adds:
- log:branches/fix@11579:11625

10 lines of code changed in 1 file:

• READSEQ: readseq.c (+10 -12)

westram 2013-10-30 15:58 Rev.: 10974

* renamed include variables

1 lines of code changed in 1 file:

• READSEQ: Makefile (+1 -1)

westram 2013-10-29 12:23 Rev.: 10955

- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

2 lines of code changed in 1 file:

• READSEQ: Makefile (+2 -2)

westram 2013-10-18 13:22 Rev.: 10842

* reintegrates 'help' into 'trunk':
* adds:
- log:branches/help@10647:10841
- log:branches/helptest@10704:10720

85 lines of code changed in 3 files:

• READSEQ: Formats (+15 -9), Readme (+36 -26), Readseq.help (+34 -25)

westram 2013-02-13 12:24 Rev.: 9575

- effect of [9574] (comments only)

1 lines of code changed in 1 file:

• READSEQ: Makefile (+1 -1)

westram 2012-05-25 09:31 Rev.: 8751

* guided by clang static checker:
- fix or at least comment many assigned but never used values

2 lines of code changed in 1 file:

• READSEQ: readseq.c (+2 -3)

westram 2011-03-25 08:49 Rev.: 7318

typos

1 lines of code changed in 1 file:

• READSEQ: readseq.c (+1 -1)

westram 2010-09-18 16:20 Rev.: 6866

* compiler-messages (merges [6848] [6849] [6850] [6851] [6853] [6855] [6856] [6860] from refactor)
- errors get listed before warnings
- pipe all compilations through postcompile filter
- optionally filter warnings and/or stop at 1st error (controllable by POST_COMPILE in ARB Makefile)
- no warnings for ptpan (too many; version in trunk is outdated)

1 lines of code changed in 1 file:

• READSEQ: Makefile (+1 -1)

westram 2010-01-12 19:00 Rev.: 6345

- fixed hard readable '} else {'

2 lines of code changed in 1 file:

• READSEQ: ureadseq.c (+2 -1)

westram 2009-12-01 10:36 Rev.: 6286

- koala 32bit does not like homegrown getline(); renamed to GetLine()

34 lines of code changed in 1 file:

• READSEQ: ureadseq.c (+34 -34)

westram 2009-08-13 11:36 Rev.: 6136

* removed manual hyphenations from original docs

2 lines of code changed in 1 file:

• READSEQ: Formats (+2 -2)

westram 2009-05-18 16:29 Rev.: 5926

* no warnings in READSEQ

3 lines of code changed in 1 file:

• READSEQ: Makefile (+3 -10)

westram 2008-06-06 13:23 Rev.: 5390

- TAB-Ex

8 lines of code changed in 1 file:

• READSEQ: readseq.c (+8 -8)

boehnel 2008-03-01 22:12 Rev.: 5172

removing some format warnings

9 lines of code changed in 1 file:

• READSEQ: readseq.c (+9 -9)

westram 2008-02-29 18:18 Rev.: 5155

- removed register keywords

5 lines of code changed in 1 file:

• READSEQ: ureadseq.c (+5 -5)

boehnel 2008-02-28 18:20 Rev.: 5139

removed some compiler warnings

33 lines of code changed in 1 file:

• READSEQ: ureadseq.c (+33 -32)

westram 2007-05-30 14:39 Rev.: 4635

- added 'clean'

9 lines of code changed in 1 file:

• READSEQ: Makefile (+9 -3)

westram 2004-04-29 11:02 Rev.: 2682

- removed broken chars

1 lines of code changed in 1 file:

• READSEQ: Formats (+1 -1)

westram 2004-01-23 18:23 Rev.: 2345

additional files that came with READSEQ

1671 lines of code changed in 4 files:

• READSEQ: Formats (new 980), Readme (new 160), Readseq.help (new 229), macinit.c (new 302)

westram 2004-01-23 18:08 Rev.: 2338

fixed and reformatted dependencies (using fix_depends.pl)

3 lines of code changed in 1 file:

• READSEQ: Makefile (+3)

westram 2003-12-03 16:40 Rev.: 2239

- fixed mostly cosmetic diffs to latest READSEQ release

52 lines of code changed in 1 file:

• READSEQ: ureadseq.c (+52 -45)

westram 2003-12-03 16:39 Rev.: 2238

- fixed NEXUS format export (missing,gap,interleave)
- fixed mostly cosmetic diffs to latest READSEQ release

7 lines of code changed in 1 file:

• READSEQ: readseq.c (+7 -6)

westram 2003-08-09 13:00 Rev.: 1617

- updated dependencies for all Makefiles
- rewrote dependency generation code. Only real changes
propagate into Makefiles - so it does no longer hurt to
call 'make depends' in ARB directory!

15 lines of code changed in 1 file:

• READSEQ: Makefile (+15 -5)

westram 2003-05-22 22:54 Rev.: 1450

disabled compiler warnings

17 lines of code changed in 1 file:

• READSEQ: Makefile (+17 -5)

westram 2002-08-23 19:53 Rev.: 866

changed assert macros (see arb_assert.h)

0 lines of code changed in 1 file:

• READSEQ: Makefile (-10)

westram 2001-11-07 19:50 Rev.: 344

patched changes from Andreas Tille
(he is building a debian package)

16 lines of code changed in 1 file:

• READSEQ: Makefile (+16 -11)

westram 2001-01-11 15:58 Rev.: 83

*** empty log message ***

4 lines of code changed in 1 file:

• READSEQ: Makefile (+4 -12)

meierh 2001-01-11 15:24 Rev.: 80

haralds checkin

12 lines of code changed in 1 file:

• READSEQ: Makefile (+12 -4)

westram 2001-01-04 15:36 Rev.: 68

Updated dependencies

6 lines of code changed in 1 file:

• READSEQ: Makefile (+6)

oldcode 2000-11-23 10:41 Rev.: 2

Initial revision

3530 lines of code changed in 5 files:

• READSEQ: Makefile (new 23), readseq.c (new 1150), ureadasn.c (new 305), ureadseq.c (new 1887), ureadseq.h (new 165)