Directory RNACMA/

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westram 2023-07-11 12:38 Rev.: 19432

* {{{GBT_get_alignment_len}}}
- now also reports error if alignment length is zero
* this case often was unhandled and did easily lead to allocation problems.
- catch error in case of zero alignment length => fixes alloc-size-larger-than-warning (in {{{NT_count_different_chars}}}).
- check + fix callers.

1 lines of code changed in 1 file:

• RNACMA: AlignedSequenceLoader.cxx (+1 -1)

westram 2022-08-03 15:52 Rev.: 19206

* reintegrates 'ali' into 'trunk'
* adds: log:branches/ali@19183:19205

89 lines of code changed in 2 files:

• RNACMA: AlignedSequenceLoader.cxx (+69 -65), Analyser.cxx (+20 -16)

westram 2022-03-04 12:26 Rev.: 18959

* reintegrates 'progress' into 'trunk'
- implements #789
* adds: log:branches/progress@18885:18958

2 lines of code changed in 1 file:

• RNACMA: Makefile (+2)

westram 2021-09-15 13:52 Rev.: 18730

* remove trailing whitespace from c source.

6 lines of code changed in 5 files:

• RNACMA: AlignedSequenceLoader.cxx (+1 -1), AlignedSequenceLoader.h (+1 -1), Analyser.h (+1 -1), Cma.cxx (+1 -1), Cma.h (+2 -2)

westram 2021-09-15 13:39 Rev.: 18725

* rename {{{CPP_OBJECTS}}} -> {{{OBJECTS}}}.

8 lines of code changed in 1 file:

• RNACMA: Makefile (+8 -8)

westram 2021-09-02 09:46 Rev.: 18697

* full update from child 'stable' into 'trunk'
- merge changes done to arb-7.0 release candidate
* adds: log:branches/stable@18690:18695

1 lines of code changed in 1 file:

• RNACMA: Analyser.cxx (+1 -1)

westram 2020-04-01 17:21 Rev.: 18426

* reintegrates 'unittest' into 'trunk'
* adds: log:branches/unittest@18363:18425

364 lines of code changed in 8 files:

• RNACMA: AlignedSequenceLoader.cxx (+86 -78), AlignedSequenceLoader.h (+15 -9), Analyser.cxx (+256 -82), Analyser.h (+5 -3), Makefile (+1 -20), dbconn.cxx (del), dbconn.h (del), needs_libs (+1 -1)

westram 2019-10-08 17:51 Rev.: 18159

* full update from child 'fix' into 'trunk'
- fix item name accessors ({{{GBT_get_name}}} + {{{GBT_get_name_or_description}}})
- add {{{null2empty}}}
* adds: log:branches/fix@18140:18158

1 lines of code changed in 1 file:

• RNACMA: AlignedSequenceLoader.cxx (+1 -1)

westram 2019-05-10 13:57 Rev.: 17877

* reintegrates 'gcc' into 'trunk'
* adds: log:branches/gcc@17850:17876

2 lines of code changed in 1 file:

• RNACMA: Makefile (+2 -2)

westram 2018-09-12 11:23 Rev.: 17362

* exception in RNACMA
- handle
- fix message

49 lines of code changed in 2 files:

• RNACMA: Analyser.cxx (+48 -41), Cma.cxx (+1 -1)

westram 2017-11-28 19:22 Rev.: 16766

* reintegrates 'gcc' into 'trunk'
- mostly cosmetics changes
* adds: log:branches/gcc@16655,16741:16743,16752:16765

1 lines of code changed in 1 file:

• RNACMA: Cma.cxx (+1 -1)

westram 2017-11-28 18:09 Rev.: 16763

* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751

4 lines of code changed in 2 files:

• RNACMA: Analyser.cxx (+1 -1), Makefile (+3 -2)

westram 2017-11-17 13:54 Rev.: 16668

* full update from child 'gcc' into 'trunk'
- fix/suppress (new) compiler warnings
- skip vectorizer notes
* adds: log:branches/gcc@16656:16667

4 lines of code changed in 1 file:

• RNACMA: Makefile (+4 -3)

westram 2017-01-16 12:17 Rev.: 15579

* reintegrates 'unittest' into 'trunk'
- activates unittests under OSX (performs #740)
* disabled a few tests + accepted a few modified results (see #741)
* {{{RegExpr}}} no longer uses exception
* fix quoting of {{{char*}}} (in reported test result)
- fixes several compiler flags unknown under OSX/clang
- fix usability of compile log (make now prints directory)
* adds: log:branches/unittest@15534:15578
* removes: [15520/branches/warnings]

13 lines of code changed in 1 file:

• RNACMA: Makefile (+13 -7)

westram 2017-01-04 18:06 Rev.: 15513

* reintegrates 'warnings' into 'trunk'
- activate additional warnings (gcc 5.x++)
- Cxx11-forward final (classes+methods)
- fix tag problems caused by using preprocessor
* adds: log:branches/warnings@15486:15489,15491:15501,15506:15512

3 lines of code changed in 3 files:

• RNACMA: AlignedSequenceLoader.h (+1 -1), Analyser.h (+1 -1), Cma.h (+1 -1)

westram 2016-08-11 11:05 Rev.: 15176

* reintegrates 'fixres' into 'trunk'
- fixes #715
* adds: log:branches/fixres@15127:15175

3 lines of code changed in 1 file:

• RNACMA: Makefile (+3)

westram 2016-05-07 10:07 Rev.: 14833

* reintegrates 'fixwarn' into 'trunk'
* adds: log:branches/fixwarn@14815:14832

2 lines of code changed in 1 file:

• RNACMA: Makefile (+2 -2)

westram 2015-04-28 12:42 Rev.: 13773

* dont warn about deprecated decls
- fix would need new version of Eigen (delay update until compilation really fails)

3 lines of code changed in 1 file:

• RNACMA: Makefile (+3 -2)

westram 2015-01-23 15:19 Rev.: 13443

* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

1 lines of code changed in 1 file:

• RNACMA: Makefile (+1 -1)

westram 2014-06-19 18:55 Rev.: 12478

* use gcc features:
- use -Og instead of -O0 (gcc4.8++)
- enable {{{-Wunused-local-typedefs}}} for gcc4.8++ (disable for RNACMA and nostd.cxx)

1 lines of code changed in 1 file:

• RNACMA: Makefile (+1)

westram 2014-05-17 14:58 Rev.: 12271

- no magic exit codes in RNACMA
- print proper errors

7 lines of code changed in 3 files:

• RNACMA: AlignedSequenceLoader.cxx (+4 -2), Analyser.cxx (+2 -2), dbconn.cxx (+1 -1)

westram 2013-10-31 15:18 Rev.: 10997

* use cflags before cxxflags (where locally modified)

5 lines of code changed in 1 file:

• RNACMA: Makefile (+5 -5)

westram 2013-10-30 16:58 Rev.: 10974

* renamed include variables

1 lines of code changed in 1 file:

• RNACMA: Makefile (+1 -1)

westram 2013-10-29 13:55 Rev.: 10956

* made A_CC and A_CXX consistent
- A_CXX previously contained cxxflags
- cxxflags are now passed down and used separately

1 lines of code changed in 1 file:

• RNACMA: Makefile (+1 -1)

westram 2013-10-29 13:23 Rev.: 10955

- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

1 lines of code changed in 1 file:

• RNACMA: Makefile (+1 -1)

westram 2013-10-29 12:43 Rev.: 10954

- document mechanism used by ARB to export variables to submakefiles
- document most important variables

1 lines of code changed in 1 file:

• RNACMA: Makefile (+1 -1)

westram 2013-09-09 16:36 Rev.: 10563

- include downcast.h from arbdbt.h
(this break C++11 compilation, i.e. gcc4.8 or newer)[[BR]]
amendment:
* also broke compilation on ubuntu 13.04 and with gcc 4.7.3 (due to nameclash with boost)

4 lines of code changed in 1 file:

• RNACMA: Makefile (+4)

westram 2013-06-04 15:20 Rev.: 10113

* changed dynamic value-initializations into default-initializations
- i believe/know they were used with ignorance of [http://stackoverflow.com/questions/620137/do-the-parentheses-after-the-type-name-make-a-difference-with-new?answertab=active#tab-top ctor-behavior].

2 lines of code changed in 1 file:

• RNACMA: Analyser.cxx (+2 -2)

westram 2013-02-13 13:24 Rev.: 9575

- effect of [9574] (comments only)

1 lines of code changed in 1 file:

• RNACMA: Makefile (+1 -1)

westram 2013-02-09 13:52 Rev.: 9521

- updated depends for [9520]

1 lines of code changed in 1 file:

• RNACMA: Makefile (+1)

westram 2013-02-09 13:50 Rev.: 9520

- include cxxforward.h via arbtools.h (which declares Noncopyable)

18 lines of code changed in 1 file:

• RNACMA: Cma.h (+18 -2)

westram 2013-02-09 12:16 Rev.: 9516

- reintegrated branch 'cxx11'

33 lines of code changed in 3 files:

• RNACMA: Cma.h (+4 -5), Makefile (+28 -3), dbconn.cxx (+1 -1)

westram 2012-09-24 16:53 Rev.: 8940

* added MBI copyright
* fixed include wrappers
* fixed cppcheck warning

49 lines of code changed in 6 files:

• RNACMA: AlignedSequenceLoader.cxx (+3), AlignedSequenceLoader.h (+15 -4), Analyser.cxx (+3), Analyser.h (+15 -7), Cma.cxx (+4 -1), Cma.h (+9 -3)

westram 2011-12-23 13:56 Rev.: 8322

- clang-fix: replace auto-arrays of non-POD types by dynamic memory

3 lines of code changed in 1 file:

• RNACMA: AlignedSequenceLoader.cxx (+3 -2)

westram 2011-12-23 13:44 Rev.: 8321

- the daily wtf

3 lines of code changed in 1 file:

• RNACMA: Cma.h (+3 -3)

westram 2011-12-20 13:29 Rev.: 8309

* moved much code into static scope

(partly reverted by [8310])

32 lines of code changed in 1 file:

• RNACMA: Cma.cxx (+32 -33)

westram 2011-09-01 15:11 Rev.: 7925

merge from dev [7821] [7822] [7923]
* fix build with COVERAGE (broken by [7785])
- fix compilation with coverage for RNACMA
- link RNACMA.a only if needed
* sort coverage by chunk-size
* added file-based filter (commented out)

5 lines of code changed in 1 file:

• RNACMA: Makefile (+5 -1)

westram 2011-08-25 23:56 Rev.: 7898

* removed RNACMA debug code

6 lines of code changed in 4 files:

• RNACMA: AlignedSequenceLoader.cxx (-82), AlignedSequenceLoader.h (-5), Analyser.cxx (-35), Cma.cxx (+6 -45)

westram 2011-08-25 23:50 Rev.: 7897

* fixed some warnings

4 lines of code changed in 3 files:

• RNACMA: AlignedSequenceLoader.cxx (+2 -3), Analyser.cxx (+1 -1), Makefile (+1)

westram 2011-08-25 23:38 Rev.: 7896

* removed disabled-code leftover from changes

2 lines of code changed in 5 files:

• RNACMA: AlignedSequenceLoader.cxx (-6), Analyser.cxx (+2 -17), Analyser.h (-1), Cma.h (-3), dbconn.cxx (-1)

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