Directory RNACMA/

Directory Created:
2011-08-25 23:30
Total Files:
10
Deleted Files:
0
Lines of Code:
1466

[root]/RNACMA

Lines of Code

RNACMA/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
westram 64 (100.0%) 1813 (100.0%) 28.3

Most Recent Commits

westram 2019-05-10 13:57 Rev.: 17877


* reintegrates 'gcc' into 'trunk'
* adds: log:branches/gcc@17850:17876

2 lines of code changed in 1 file:

  • RNACMA: Makefile (+2 -2)
westram 2018-09-12 11:23 Rev.: 17362


* exception in RNACMA
- handle
- fix message

49 lines of code changed in 2 files:

  • RNACMA: Analyser.cxx (+48 -41), Cma.cxx (+1 -1)
westram 2017-11-28 19:22 Rev.: 16766


* reintegrates 'gcc' into 'trunk'
- mostly cosmetics changes
* adds: log:branches/gcc@16655,16741:16743,16752:16765

1 lines of code changed in 1 file:

  • RNACMA: Cma.cxx (+1 -1)
westram 2017-11-28 18:09 Rev.: 16763


* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751

4 lines of code changed in 2 files:

  • RNACMA: Analyser.cxx (+1 -1), Makefile (+3 -2)
westram 2017-11-17 13:54 Rev.: 16668


* full update from child 'gcc' into 'trunk'
- fix/suppress (new) compiler warnings
- skip vectorizer notes
* adds: log:branches/gcc@16656:16667

4 lines of code changed in 1 file:

  • RNACMA: Makefile (+4 -3)
westram 2017-01-16 12:17 Rev.: 15579


* reintegrates 'unittest' into 'trunk'
- activates unittests under OSX (performs #740)
* disabled a few tests + accepted a few modified results (see #741)
* {{{RegExpr}}} no longer uses exception
* fix quoting of {{{char*}}} (in reported test result)
- fixes several compiler flags unknown under OSX/clang
- fix usability of compile log (make now prints directory)
* adds: log:branches/unittest@15534:15578
* removes: [15520/branches/warnings]

13 lines of code changed in 1 file:

  • RNACMA: Makefile (+13 -7)
westram 2017-01-04 18:06 Rev.: 15513


* reintegrates 'warnings' into 'trunk'
- activate additional warnings (gcc 5.x++)
- Cxx11-forward final (classes+methods)
- fix tag problems caused by using preprocessor
* adds: log:branches/warnings@15486:15489,15491:15501,15506:15512

3 lines of code changed in 3 files:

  • RNACMA: AlignedSequenceLoader.h (+1 -1), Analyser.h (+1 -1), Cma.h (+1 -1)
westram 2016-08-11 11:05 Rev.: 15176


* reintegrates 'fixres' into 'trunk'
- fixes #715
* adds: log:branches/fixres@15127:15175

3 lines of code changed in 1 file:

  • RNACMA: Makefile (+3)
westram 2016-05-07 10:07 Rev.: 14833


* reintegrates 'fixwarn' into 'trunk'
* adds: log:branches/fixwarn@14815:14832

2 lines of code changed in 1 file:

  • RNACMA: Makefile (+2 -2)
westram 2015-04-28 12:42 Rev.: 13773


* dont warn about deprecated decls
- fix would need new version of Eigen (delay update until compilation really fails)

3 lines of code changed in 1 file:

  • RNACMA: Makefile (+3 -2)
westram 2015-01-23 15:19 Rev.: 13443


* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

1 lines of code changed in 1 file:

  • RNACMA: Makefile (+1 -1)
westram 2014-06-19 18:55 Rev.: 12478


* use gcc features:
- use -Og instead of -O0 (gcc4.8++)
- enable {{{-Wunused-local-typedefs}}} for gcc4.8++ (disable for RNACMA and nostd.cxx)

1 lines of code changed in 1 file:

  • RNACMA: Makefile (+1)
westram 2014-05-17 14:58 Rev.: 12271


- no magic exit codes in RNACMA
- print proper errors

7 lines of code changed in 3 files:

  • RNACMA: AlignedSequenceLoader.cxx (+4 -2), Analyser.cxx (+2 -2), dbconn.cxx (+1 -1)
westram 2013-10-31 15:18 Rev.: 10997


* use cflags before cxxflags (where locally modified)

5 lines of code changed in 1 file:

  • RNACMA: Makefile (+5 -5)
westram 2013-10-30 16:58 Rev.: 10974


* renamed include variables

1 lines of code changed in 1 file:

  • RNACMA: Makefile (+1 -1)
westram 2013-10-29 13:55 Rev.: 10956


* made A_CC and A_CXX consistent
- A_CXX previously contained cxxflags
- cxxflags are now passed down and used separately

1 lines of code changed in 1 file:

  • RNACMA: Makefile (+1 -1)
westram 2013-10-29 13:23 Rev.: 10955


- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

1 lines of code changed in 1 file:

  • RNACMA: Makefile (+1 -1)
westram 2013-10-29 12:43 Rev.: 10954


- document mechanism used by ARB to export variables to submakefiles
- document most important variables

1 lines of code changed in 1 file:

  • RNACMA: Makefile (+1 -1)
westram 2013-09-09 16:36 Rev.: 10563


- include downcast.h from arbdbt.h
(this break C++11 compilation, i.e. gcc4.8 or newer)[[BR]]
amendment:
* also broke compilation on ubuntu 13.04 and with gcc 4.7.3 (due to nameclash with boost)

4 lines of code changed in 1 file:

  • RNACMA: Makefile (+4)
westram 2013-06-04 15:20 Rev.: 10113


* changed dynamic value-initializations into default-initializations
- i believe/know they were used with ignorance of [http://stackoverflow.com/questions/620137/do-the-parentheses-after-the-type-name-make-a-difference-with-new?answertab=active#tab-top ctor-behavior].

2 lines of code changed in 1 file:

  • RNACMA: Analyser.cxx (+2 -2)
westram 2013-02-13 13:24 Rev.: 9575


- effect of [9574] (comments only)

1 lines of code changed in 1 file:

  • RNACMA: Makefile (+1 -1)
westram 2013-02-09 13:52 Rev.: 9521


- updated depends for [9520]

1 lines of code changed in 1 file:

  • RNACMA: Makefile (+1)
westram 2013-02-09 13:50 Rev.: 9520


- include cxxforward.h via arbtools.h (which declares Noncopyable)

18 lines of code changed in 1 file:

  • RNACMA: Cma.h (+18 -2)
westram 2013-02-09 12:16 Rev.: 9516


- reintegrated branch 'cxx11'

33 lines of code changed in 3 files:

  • RNACMA: Cma.h (+4 -5), Makefile (+28 -3), dbconn.cxx (+1 -1)
westram 2012-09-24 16:53 Rev.: 8940


* added MBI copyright
* fixed include wrappers
* fixed cppcheck warning

49 lines of code changed in 6 files:

  • RNACMA: AlignedSequenceLoader.cxx (+3), AlignedSequenceLoader.h (+15 -4), Analyser.cxx (+3), Analyser.h (+15 -7), Cma.cxx (+4 -1), Cma.h (+9 -3)
westram 2011-12-23 13:56 Rev.: 8322


- clang-fix: replace auto-arrays of non-POD types by dynamic memory

3 lines of code changed in 1 file:

  • RNACMA: AlignedSequenceLoader.cxx (+3 -2)
westram 2011-12-23 13:44 Rev.: 8321


- the daily wtf

3 lines of code changed in 1 file:

  • RNACMA: Cma.h (+3 -3)
westram 2011-12-20 13:29 Rev.: 8309


* moved much code into static scope

(partly reverted by [8310])

32 lines of code changed in 1 file:

  • RNACMA: Cma.cxx (+32 -33)
westram 2011-09-01 15:11 Rev.: 7925


merge from dev [7821] [7822] [7923]
* fix build with COVERAGE (broken by [7785])
- fix compilation with coverage for RNACMA
- link RNACMA.a only if needed
* sort coverage by chunk-size
* added file-based filter (commented out)

5 lines of code changed in 1 file:

  • RNACMA: Makefile (+5 -1)
westram 2011-08-25 23:56 Rev.: 7898


* removed RNACMA debug code

6 lines of code changed in 4 files:

  • RNACMA: AlignedSequenceLoader.cxx (-82), AlignedSequenceLoader.h (-5), Analyser.cxx (-35), Cma.cxx (+6 -45)
westram 2011-08-25 23:50 Rev.: 7897


* fixed some warnings

4 lines of code changed in 3 files:

  • RNACMA: AlignedSequenceLoader.cxx (+2 -3), Analyser.cxx (+1 -1), Makefile (+1)
westram 2011-08-25 23:38 Rev.: 7896


* removed disabled-code leftover from changes

2 lines of code changed in 5 files:

  • RNACMA: AlignedSequenceLoader.cxx (-6), Analyser.cxx (+2 -17), Analyser.h (-1), Cma.h (-3), dbconn.cxx (-1)
westram 2011-08-25 23:30 Rev.: 7895


* added arb_rnacma (correlated mutation analysis) written by Breno Faria
- fixed compilation and runtime errors

1548 lines of code changed in 10 files:

  • RNACMA: AlignedSequenceLoader.cxx (new 282), AlignedSequenceLoader.h (new 70), Analyser.cxx (new 253), Analyser.h (new 75), Cma.cxx (new 543), Cma.h (new 163), Makefile (new 94), dbconn.cxx (new 41), dbconn.h (new 23), needs_libs (new 4)
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