Directory GDEHELP/

Directory Created:
2000-11-23 11:41
Total Files:
10
Deleted Files:
31
Lines of Code:
774

[root]/GDEHELP
        Folder removed from repo DATA_FILES (0 files, 0 lines)
        directory in repo FASTA (0 files, 0 lines)
            directory in repo GENBANK (1 files, 1500 lines)
            directory in repo MATRIX (9 files, 258 lines)
        directory in repo HELP_PLAIN (3 files, 135 lines)
        directory in repo HELP_WRITTEN (8 files, 750 lines)
        directory in repo MENUS (19 files, 2018 lines)
        Folder removed from repo PHYLIP (0 files, 0 lines)

Lines of Code

GDEHELP/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 171 (100.0%) 9650 (100.0%) 56.4
oldcode 28 (16.4%) 8231 (85.3%) 293.9
westram 129 (75.4%) 1098 (11.4%) 8.5
jobb 7 (4.1%) 314 (3.3%) 44.8
meierh 2 (1.2%) 3 (0.0%) 1.5
epruesse 1 (0.6%) 2 (0.0%) 2.0
foerster 1 (0.6%) 1 (0.0%) 1.0
artemov 2 (1.2%) 1 (0.0%) 0.5
baderk 1 (0.6%) 0 (0.0%) 0.0

Most Recent Commits

westram 2019-03-04 15:22 Rev.: 17634


* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

3 lines of code changed in 1 file:

  • GDEHELP: .gitignore (new 3)
westram 2017-08-23 13:42 Rev.: 16237


* fix spelling for 'occurrence'

1 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+1 -1)
westram 2016-12-13 12:33 Rev.: 15411


* fix warnings caused by converted documentation
- conversion of html docs
* remove lynx-"<HR/>"-output (arb-help-converter tries to add that to paragraphs)
* add empty line after "generated from" message
- manual reflow of one problematic section in {{{READSEQ/Formats}}}

8 lines of code changed in 1 file:

  • GDEHELP: Makefile.helpfiles (+8 -4)
westram 2016-05-02 18:23 Rev.: 14799


* make 4.1 spams the compile log with
{{{
recipe for target 'xxx' failed
}}}
* replaces {{{-oktofail}}} by {{{oktofail || true}}}

5 lines of code changed in 2 files:

  • GDEHELP: Makefile (+1 -1), Makefile.helpfiles (+4 -4)
epruesse 2015-05-02 00:41 Rev.: 13797

fix spelling of likelihood

2 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+2 -2)
westram 2015-03-24 14:22 Rev.: 13598


* rename menu 'User' -> 'Network'
* reuse menu 'User' to place custom entries into 'ARB/Tools' menu

7 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+7 -2)
westram 2014-03-24 18:57 Rev.: 11874


* reintegrates 'customize' into 'trunk'
- implements #484
- clean up worst things in GDE to allow use of custom menu-files
* adds:
- log:branches/customize@11828:11840,11844:11873

15 lines of code changed in 3 files:

  • GDEHELP: ARB_GDEmenus.source (+3 -3), Makefile (+11 -12), pp.pl (+1 -1)
westram 2014-03-18 21:45 Rev.: 11815


* reintegrates 'deb' into 'trunk'
- fixes #215
- performs #489
* adds:
- log:branches/deb@11801:11814

2 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+2 -4)
westram 2014-02-15 16:51 Rev.: 11626


* reintegrates 'fix' into 'trunk'
- implements: #158
- fixes: #386, #463, #459
* adds:
- log:branches/fix@11579:11625

24 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+24 -4)
westram 2013-10-18 14:22 Rev.: 10842


* reintegrates 'help' into 'trunk':
* adds:
- log:branches/help@10647:10841
- log:branches/helptest@10704:10720

17 lines of code changed in 4 files:

  • GDEHELP: GDE2.2_manual_postscript (del), GDE2.2_manual_text (del), Makefile.helpfiles (+16 -7), genhelptree.sh (+1 -1)
westram 2013-09-24 15:05 Rev.: 10646


- remove write permission for generated help-files

32 lines of code changed in 3 files:

  • GDEHELP: Makefile.helpfiles (+27 -16), genhelp.sh (+2), genhelptree.sh (+3)
westram 2013-09-17 16:53 Rev.: 10600


* help files triggered by GDE menus
- only helpfiles referenced in first found .menu were expected/generated (found menu was align.menu). broken by [8806]
- added missing generation of phylip.help from phylip.html
- reactivates the following files
{{{
agde_DNAml_rates.hlp
agde_dnaml.hlp
agde_dnaml_sub_AxML_doc.hlp
agde_dnaml_sub_fastDNAml_doc.hlp
agde_dnapars.hlp
agde_lsadt.hlp
agde_phylip.hlp
agde_phylip_distance.hlp
agde_phylip_distance_sub_dnadist_doc.hlp
agde_phylip_distance_sub_fitch_doc.hlp
agde_phylip_distance_sub_kitsch_doc.hlp
agde_phylip_distance_sub_neighbor_doc.hlp
agde_phylip_distance_sub_protdist_doc.hlp
agde_phylip_sub_dnadist_doc.hlp
agde_phylip_sub_fitch_doc.hlp
agde_phylip_sub_kitsch_doc.hlp
agde_phylip_sub_neighbor_doc.hlp
agde_phylip_sub_protdist_doc.hlp
agde_phyml.hlp
agde_proml.hlp
agde_protpars.hlp
agde_readseq.hlp
agde_readseq_sub_Formats.hlp
agde_readseq_sub_Readme.hlp
agde_readseq_sub_Readseq_help.hlp
agde_treepuzzle.hlp
}}}

11 lines of code changed in 2 files:

  • GDEHELP: Makefile (+2 -2), Makefile.helpfiles (+9 -4)
westram 2013-08-28 17:23 Rev.: 10513


* DRYed PHYML interface (Amino vs DNA)

4 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+4)
westram 2013-08-28 17:19 Rev.: 10512


* helper target to ease refactoring ARB_GDEmenus

20 lines of code changed in 1 file:

  • GDEHELP: Makefile (+20 -1)
westram 2013-08-28 16:38 Rev.: 10510


* split menu-sources for both versions of phyml

2 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+2)
westram 2013-08-28 16:29 Rev.: 10509


* remove trailing '3' in fastdnaml.menu (was ignored by arb_read_tree)
* split menu-sources for phylip_ml and phyml

1 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+1)
westram 2013-03-27 17:15 Rev.: 9750


- applied (not merged!) [9668] from gtk_only.
- merge did not work w/o conflicts since the patch mixes gtk-specific changes with general changes (better would have been applied to some non-gtk-branch and then merged into gtk-branch)
- merging and resolving conflicts now would skip unmergeable parts. when gtk is merged someday, these parts would get lost.

17 lines of code changed in 4 files:

  • GDEHELP: Makefile (+4 -2), Makefile.helpfiles (+4 -4), genhelp.sh (+2 -1), genhelptree.sh (+7 -6)
westram 2012-11-15 17:12 Rev.: 9170


merge from stable_5.0 [9163] [9164] [9166]

8 lines of code changed in 1 file:

  • GDEHELP: Makefile (+8 -2)
westram 2012-09-10 13:44 Rev.: 8875


- removed gotos

33 lines of code changed in 1 file:

  • GDEHELP: pp.pl (+33 -25)
westram 2012-06-13 20:58 Rev.: 8808


* cleanup generated menu

3 lines of code changed in 1 file:

  • GDEHELP: Makefile (+3 -2)
westram 2012-06-13 20:54 Rev.: 8807


* no longer use C-preprocessor

4 lines of code changed in 1 file:

  • GDEHELP: Makefile (+4 -18)
westram 2012-06-13 20:44 Rev.: 8806


* cooked my own preprocessor for ARB_GDEmenus generation
* intermediate checkin:
- uses two methods to generate ARB_GDEmenus
- compares results and fails on difference. Branch from here, if own pp needs changes

388 lines of code changed in 3 files:

  • GDEHELP: Makefile (+28 -11), cleanmenu.pl (new 21), pp.pl (new 339)
westram 2012-04-25 07:53 Rev.: 8660


* workaround quoting error in ARB_GDEmenus (clang)

2 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+2 -1)
westram 2012-04-21 15:07 Rev.: 8644


* removed commented code

0 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (-2)
westram 2012-04-20 11:55 Rev.: 8636


merge from stable_5.0 [8635] (OSX)

2 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+2)
westram 2011-11-10 11:30 Rev.: 8205


merge from stable_5.0 [8203]
* removed molphy (protml)

0 lines of code changed in 2 files:

  • GDEHELP: ARB_GDEmenus.source (-1), Makefile.helpfiles (-7)
westram 2011-07-28 11:01 Rev.: 7769


merge from dev [7680] [7681] [7682] [7696] [7698]
* misc build issues
- more fixes to "make clean"
- fix make-jobserver warnings (unwanted fallbacks to -j1)
- print max. test duration of single lib-tests
- create whitespace patch

2 lines of code changed in 1 file:

  • GDEHELP: Makefile (+2 -2)
westram 2011-04-29 20:01 Rev.: 7492


* (re)export environment variable ARB_XCMD on startup
- subprocesses depend on it (arb_textedit, GDE entries)
- default to '$ARB_XTERM -e'
* use bash in subshell
* removed 'cmdtool' as default from GDE scripts (used if ARB_XCMD undefined)

1 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+1 -1)
westram 2011-04-29 17:44 Rev.: 7491


* obsolete

0 lines of code changed in 1 file:

  • GDEHELP: GDEmenus (del)
westram 2011-04-29 15:14 Rev.: 7488


* merges [7486] [7487] to trunk

19 lines of code changed in 1 file:

  • GDEHELP: GDEmenus (+19 -19)
westram 2011-04-13 20:21 Rev.: 7409


merged from dev [7358] [7359] [7360] [7363] [7364] [7365] [7367]
* tweaked build process
- get rid of '.depends: No such file or directory'
- make clean now is much more scrupulous! removal '''notably''' includes lib/pts, lib/nas and lib/arb_tcp.dat (when they are no symlinks)
- suppress some output
- added several unreached targets (to test random failures)
- fine-grained tools-dependencies
- automatically generate target directories (GENC ...)
- removed duplicated target 'mbin' (same as 'comtools')
- added target 'setup_after_clean' (use after 'clean' when doing a partial build)

1 lines of code changed in 1 file:

  • GDEHELP: Makefile.helpfiles (+1 -2)
westram 2009-08-13 12:34 Rev.: 6134


* add source information to generated help files
* forward comments w/o prepending 'SECTION'

2 lines of code changed in 1 file:

  • GDEHELP: genhelp.sh (+2)
westram 2009-06-17 13:55 Rev.: 6069


* changed GDE menu names
* added hotkeys
* GDE_load_menu now warns if requested to load an unknown menu or topic (console)

22 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+22 -10)
westram 2009-04-22 10:46 Rev.: 5834


* novice mode -> expert mode (thx to Elmar Pruesse)
- expert mode automatically propagates to clients
- reassigned which items are visible in non-expert-mode

3 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+3 -2)
westram 2008-11-25 13:39 Rev.: 5609

avoid generation of defect intermediate files (happens if lynx is not installed).
These files had to be removed manually, to force regeneration after lynx-installation.

3 lines of code changed in 1 file:

  • GDEHELP: Makefile.helpfiles (+3 -3)
baderk 2008-07-16 17:24 Rev.: 5458

Removed .cvsignore files from repository. Hopefully this time all svn:ignore flags were set right.

0 lines of code changed in 1 file:

  • GDEHELP: .cvsignore (del)
westram 2008-06-06 14:23 Rev.: 5390

- TAB-Ex

1 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+1 -1)
westram 2008-03-14 14:42 Rev.: 5252

- if helpfiles specified in GDE-MENUS exists in ./HELP_WRITTEN
do not warn about missing helpfile
(these helpfiles are processed later from ./HELP_SOURCE/genhelp/Makefile)

10 lines of code changed in 1 file:

  • GDEHELP: Makefile.helpfiles (+10 -4)
westram 2008-03-14 14:41 Rev.: 5244

- replace two flavours of raxml-menus (DNA/PROTEIN), by
one menu file handling both. The file is included twice
with different #defines

6 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+6 -2)
meierh 2008-01-22 19:20 Rev.: 5024

raxmldna raxmlprotein menues introduced

2 lines of code changed in 1 file:

  • GDEHELP: ARB_GDEmenus.source (+2 -1)

(55 more)

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