Directory PERL_SCRIPTS/ARBTOOLS/

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westram 2021-06-25 12:53 Rev.: 18658

* accept quoted LFs while importing from CSV.

58 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+58 -23)

westram 2020-09-23 13:39 Rev.: 18478

* mark other scripts that might need "eval vs. die-catcher" fixes.

1 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+1 -1)

westram 2020-09-23 13:37 Rev.: 18477

* do not abort if species lacks index-field.
* count + report ambiguous hits.

8 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+8 -4)

westram 2020-09-23 13:34 Rev.: 18476

* provide perl function {{{ARB::set_inGlobalEvalState}}}.
* use it to inform {{{ARB.pm}}} that {{{import_from_table.pl}}} uses eval (and does not like to get aborted).

3 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+3 -6)

epruesse 2015-05-02 00:41 Rev.: 13797

fix spelling of likelihood

26 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+26 -26)

westram 2014-07-22 12:32 Rev.: 12553

- fixes #486

5 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+5 -2)

westram 2014-06-13 17:53 Rev.: 12442

- remove rest of non-unix LFs (trailing \r's)

1 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+1)

westram 2014-03-12 12:19 Rev.: 11778

* reintegrates 'macros' into 'trunk'
- implements #456
* adds:
- log:branches/macros@11761:11777

1 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+1 -1)

westram 2014-02-15 16:51 Rev.: 11626

* reintegrates 'fix' into 'trunk'
- implements: #158
- fixes: #386, #463, #459
* adds:
- log:branches/fix@11579:11625

147 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+147 -38)

westram 2013-08-27 12:40 Rev.: 10497

* replaced 'consense tree' by 'consensus tree' (user-visible terminology)
* added documentation for ARBs consensus tree algorithm

3 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+3 -3)

westram 2011-07-22 22:28 Rev.: 7739

- fix: print exitcode of failed system calls

3 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+3 -3)

westram 2011-02-04 17:30 Rev.: 7126

- added GDE entry to import fields from calc-sheets
- importer
- can now handle CSV with quoted entries
- report and forward error to ARB (if using ':')
- renamed NDS exporter

50 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+50 -12)

westram 2011-02-02 21:35 Rev.: 7119

* import_from_table
- save DB (if loaded)
- implemented '--marked-only' + '--as-integer'
- added '--mark' (marks species where field has been imported)
- check more errors
- list unmatched entries sorted by calc-sheet-row-number
- print summary for unmatched/unhandled

57 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+57 -20)

epruesse 2011-02-02 18:36 Rev.: 7118

fix typo in help msg

1 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+1 -1)

westram 2011-02-02 11:02 Rev.: 7115

- set executable flag

1 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+1)

westram 2011-02-01 18:27 Rev.: 7109

- basic implementation of calc-sheet import

231 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (new 231)

westram 2008-12-25 14:03 Rev.: 5675

- removed automatic timestamps (the best they were good for, were vc-conflicts)

0 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (-1)

westram 2008-03-14 14:41 Rev.: 5248

- if no result-file is found, pick bipartitions-file or
parsimonyTree-file instead
- can create consense-tree alternatively to importing
multiple trees
- writes content of RAxML-info file into ARB tree comment

100 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+100 -24)

westram 2008-03-05 13:38 Rev.: 5205

- trees were sorted the wrong way

2 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+2 -2)

westram 2008-03-05 12:41 Rev.: 5200

- skript to import (some) raxml-trees

130 lines of code changed in 1 file:

• PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (new 130)