Directory PERL_SCRIPTS/ARBTOOLS/

Directory Created:
2008-03-05 12:41
Total Files:
2
Deleted Files:
0
Lines of Code:
625

[root]/PERL_SCRIPTS/ARBTOOLS
            Folder removed from repo DOCUMENTED (0 files, 0 lines)
            directory in repo IFTHELP (4 files, 254 lines)
            directory in repo TESTS (1 files, 3 lines)

Lines of Code

PERL_SCRIPTS/ARBTOOLS/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 16 (100.0%) 758 (100.0%) 47.3
westram 14 (87.5%) 731 (96.4%) 52.2
epruesse 2 (12.5%) 27 (3.6%) 13.5

Most Recent Commits

epruesse 2015-05-02 00:41 Rev.: 13797

fix spelling of likelihood

26 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+26 -26)
westram 2014-07-22 12:32 Rev.: 12553


- fixes #486

5 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+5 -2)
westram 2014-06-13 17:53 Rev.: 12442


- remove rest of non-unix LFs (trailing \r's)

1 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+1)
westram 2014-03-12 12:19 Rev.: 11778


* reintegrates 'macros' into 'trunk'
- implements #456
* adds:
- log:branches/macros@11761:11777

1 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+1 -1)
westram 2014-02-15 16:51 Rev.: 11626


* reintegrates 'fix' into 'trunk'
- implements: #158
- fixes: #386, #463, #459
* adds:
- log:branches/fix@11579:11625

147 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+147 -38)
westram 2013-08-27 12:40 Rev.: 10497


* replaced 'consense tree' by 'consensus tree' (user-visible terminology)
* added documentation for ARBs consensus tree algorithm

3 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+3 -3)
westram 2011-07-22 22:28 Rev.: 7739


- fix: print exitcode of failed system calls

3 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+3 -3)
westram 2011-02-04 17:30 Rev.: 7126


- added GDE entry to import fields from calc-sheets
- importer
- can now handle CSV with quoted entries
- report and forward error to ARB (if using ':')
- renamed NDS exporter

50 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+50 -12)
westram 2011-02-02 21:35 Rev.: 7119


* import_from_table
- save DB (if loaded)
- implemented '--marked-only' + '--as-integer'
- added '--mark' (marks species where field has been imported)
- check more errors
- list unmatched entries sorted by calc-sheet-row-number
- print summary for unmatched/unhandled

57 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+57 -20)
epruesse 2011-02-02 18:36 Rev.: 7118

fix typo in help msg

1 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+1 -1)
westram 2011-02-02 11:02 Rev.: 7115


- set executable flag

1 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (+1)
westram 2011-02-01 18:27 Rev.: 7109


- basic implementation of calc-sheet import

231 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: import_from_table.pl (new 231)
westram 2008-12-25 14:03 Rev.: 5675


- removed automatic timestamps (the best they were good for, were vc-conflicts)

0 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (-1)
westram 2008-03-14 14:41 Rev.: 5248

- if no result-file is found, pick bipartitions-file or
parsimonyTree-file instead
- can create consense-tree alternatively to importing
multiple trees
- writes content of RAxML-info file into ARB tree comment

100 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+100 -24)
westram 2008-03-05 13:38 Rev.: 5205

- trees were sorted the wrong way

2 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+2 -2)
westram 2008-03-05 12:41 Rev.: 5200

- skript to import (some) raxml-trees

130 lines of code changed in 1 file:

  • PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (new 130)
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