Directory lib/sellists/

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westram 2022-08-03 15:52 Rev.: 19206

* reintegrates 'ali' into 'trunk'
* adds: log:branches/ali@19183:19205

3 lines of code changed in 1 file:

• lib/sellists: README (+3 -1)

westram 2018-03-27 09:55 Rev.: 16870

* cosmetics: align 1st column of predefined srt/aci selection lists

24 lines of code changed in 3 files:

• lib/sellists: srt_aci.sellst (+16 -16), srt_aci_cosmetic.sellst (+2 -2), srt_aci_gc.sellst (+6 -6)

westram 2013-11-05 14:30 Rev.: 11080

* merge (10844 10845) from 'aci' into 'trunk':
* adds:
- log:branches/aci@10844:10845
- log:branches/dev@7288:7291,7294:7296,7824:7828,7830,7833:7834,7837:7838,7841:7843,7845:7848,7939

2 lines of code changed in 2 files:

• lib/sellists: mod_fields.sellst (+1 -2), srt_aci.sellst (+1 -1)

westram 2012-05-02 20:21 Rev.: 8696

* merge from saiali log:branches/saiali@8635-8695
- unalign center (blockop)
- modify SAI range (using ACI/SRT)
- align ranges defined by SAI
- refactorings
* block ops
* selection lists

16 lines of code changed in 1 file:

• lib/sellists: mod_sequence.sellst (new 16)

westram 2009-04-02 14:22 Rev.: 5783

* added 2 taxonomy ACIs

3 lines of code changed in 1 file:

• lib/sellists: mod_fields.sellst (+3)

westram 2009-03-16 15:11 Rev.: 5768

* rewrote genome importer
* remove redundant 'translation' entries of genes during import
* whole code is using
- 'pos_start' instead of 'pos_begin*'
- 'pos_stop' instead of 'pos_end*'
- 'pos_certain' instead of 'pos_uncertain*'
- 'pos_complement' instead of 'complement'
* convert gene locations in old genome DBs into new format
* added several gene functions to ARBDB
- GEN_create_nonexisting_gene...()
- GEN_find_or_create_gene..()
- GEN_global_gene_identifier()
* added code to handle gene locations into ARBDB (type GEN_position represents every flavour of a Genbank/EMBL feature location)
* added GBT_write_byte()
* rewrote GBT_read_gene_sequence() (adding GBT_read_gene_sequence_and_length)
* changed codon tables according to NCBI code info
- added start codon(s) for code 3, 9, 13
- changed code names
* when importing to a new DB, reset DB type if import fails (before ARB had to be restarted, after one try with wrong genome/non-genome import)

1 lines of code changed in 1 file:

• lib/sellists: mod_gene_fields.sellst (+1 -3)

westram 2008-06-06 14:23 Rev.: 5390

- TAB-Ex

24 lines of code changed in 6 files:

• lib/sellists: README (+1 -1), mod_fields.sellst (+9 -9), mod_fields_common.sellst (+1 -1), mod_fields_gc.sellst (+6 -6), mod_gene_fields.sellst (+3 -3), srt_aci.sellst (+4 -4)

westram 2007-01-27 14:30 Rev.: 4302

- 'tmp'->'ambig'

2 lines of code changed in 1 file:

• lib/sellists: mod_fields.sellst (+2 -2)

westram 2004-08-24 13:54 Rev.: 3112

- added taxonomy(1)

5 lines of code changed in 1 file:

• lib/sellists: srt_aci.sellst (+5 -4)

westram 2003-06-24 16:19 Rev.: 1496

- added * to non-poison characters (protein)

2 lines of code changed in 1 file:

• lib/sellists: mod_fields_gc.sellst (+2 -2)

westram 2002-11-15 19:26 Rev.: 976

new commands

9 lines of code changed in 2 files:

• lib/sellists: mod_fields.sellst (+1 -1), mod_fields_gc.sellst (+8 -3)

westram 2002-11-14 19:52 Rev.: 972

*** empty log message ***

18 lines of code changed in 1 file:

• lib/sellists: README (+18 -4)

westram 2002-01-22 20:32 Rev.: 493

added amino count to mod_fields_gc.sellst

16 lines of code changed in 3 files:

• lib/sellists: mod_fields.sellst (+3), mod_fields_gc.sellst (+7 -6), srt_aci_gc.sellst (+6 -6)

westram 2001-11-15 17:32 Rev.: 376

added count amino acids

2 lines of code changed in 1 file:

• lib/sellists: srt_aci_gc.sellst (+2 -1)

westram 2001-03-26 19:13 Rev.: 146

First visible Gene-Map

2 lines of code changed in 1 file:

• lib/sellists: mod_gene_fields.sellst (+2 -1)

westram 2001-03-23 19:17 Rev.: 140

*** empty log message ***

4 lines of code changed in 1 file:

• lib/sellists: mod_gene_fields.sellst (new 4)

westram 2001-01-11 13:43 Rev.: 75

Modified by WL

9 lines of code changed in 2 files:

• lib/sellists: mod_fields_gc.sellst (+4 -1), srt_aci_gc.sellst (+5 -4)

oldcode 2000-11-23 11:41 Rev.: 2

Initial revision

48 lines of code changed in 7 files:

• lib/sellists: README (new 11), mod_fields.sellst (new 9), mod_fields_common.sellst (new 1), mod_fields_gc.sellst (new 5), srt_aci.sellst (new 15), srt_aci_cosmetic.sellst (new 2), srt_aci_gc.sellst (new 5)