Directory SH/

Directory Created:
2000-11-23 10:41
Total Files:
37
Deleted Files:
9
Lines of Code:
2706

[root]/SH

Lines of Code

SH/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 217 (100.0%) 3895 (100.0%) 17.9
westram 186 (85.7%) 3360 (86.3%) 18.0
oldcode 17 (7.8%) 301 (7.7%) 17.7
richter 2 (0.9%) 115 (3.0%) 57.5
epruesse 7 (3.2%) 67 (1.7%) 9.5
aboeckma 2 (0.9%) 39 (1.0%) 19.5
meierh 1 (0.5%) 12 (0.3%) 12.0
yadhu 1 (0.5%) 1 (0.0%) 1.0
baderk 1 (0.5%) 0 (0.0%) 0.0

Most Recent Commits

westram 2022-10-27 13:59 Rev.: 19285


* again update prerequisites: use libxerces-c-dev
* also use changed prerequisites in {{{arb_INSTALL.txt}}}

1 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+1 -2)
westram 2022-10-27 13:18 Rev.: 19284


* fix prerequisites for motif library.

7 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+7 -2)
westram 2022-09-08 12:12 Rev.: 19269


* timeout 'read' command after 3 days
- avoids script zombies when not started from console.

6 lines of code changed in 1 file:

  • SH: arb_launcher (+6 -2)
westram 2022-09-07 15:04 Rev.: 19268


* replace uses of {{{command -v}}}.

4 lines of code changed in 2 files:

  • SH: arb_launcher (+1 -1), arb_sina.sh (+3 -1)
westram 2022-09-07 15:03 Rev.: 19267


* replace uses of {{{realpath}}}.

4 lines of code changed in 1 file:

  • SH: arb_sina_install_from_fat_tarball.sh (+4 -2)
westram 2022-09-07 14:57 Rev.: 19265


* script to replace {{{realpath}}} and {{{command -v}}}.

90 lines of code changed in 1 file:

  • SH: arb_path.sh (new 90)
westram 2022-09-05 15:06 Rev.: 19263


* {{{arb_sina.sh}}}:
- no longer echo everything.
* instead show that fat tarball has been detected and show effective {{{LD_LIBRARY_PATH}}}.
- option to show general info (instead of running sina).
* full path.
* dynamic library dependencies.
* sina version.
* log that info into sys.info from {{{arb_launcher}}}

29 lines of code changed in 2 files:

  • SH: arb_launcher (+1), arb_sina.sh (+28 -3)
westram 2022-09-05 15:02 Rev.: 19262


* add 'View sysinfo' entry to arb 'Tools' menu.
- shows 'sys.info' generated by arb_launcher.
* document 'ARB session log archive'.

13 lines of code changed in 1 file:

  • SH: arb_show_log.pl (+13 -5)
westram 2022-09-05 15:00 Rev.: 19261


* tweak logged system information:
- log date.
- window manager
* dump basic info (XDG_CURRENT_DESKTOP + GDMSESSION)
- link to posting which collects common combinations
* dump version info of a few known window managers (where binary found).

32 lines of code changed in 1 file:

  • SH: arb_launcher (+32 -3)
westram 2022-09-02 14:50 Rev.: 19250


* fix sina install script
- allow optional third argument {{{--no-check}}} for NFS installation.
- handle more error cases.
- use absolute pathnames.

40 lines of code changed in 1 file:

  • SH: arb_sina_install_from_fat_tarball.sh (+40 -22)
westram 2022-09-01 15:19 Rev.: 19245


* reintegrates 'sina' into 'trunk'
- build/deliver sina together with arb
* adds: log:branches/sina@18984:19043,19046:19069,19072:19244

132 lines of code changed in 3 files:

  • SH: arb_installubuntu4arb.sh (+11 -1), arb_sina.sh (new 22), arb_sina_install_from_fat_tarball.sh (new 99)
westram 2022-05-20 08:39 Rev.: 19043


* only check for {{{makedepend}}} when dependencies are updated (not required for plain build).
* update requirements
- makedepend not required for compile (only for develop).
- opengl.

1 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+1 -1)
westram 2022-02-07 18:12 Rev.: 18927


* add 'arb_catlog' (cat file to stdout wrapped in delimiter lines).

12 lines of code changed in 1 file:

  • SH: arb_catlog (new 12)
westram 2022-02-07 18:09 Rev.: 18926


* do not trace arb_raxml script.

1 lines of code changed in 1 file:

  • SH: arb_raxml (+1 -1)
westram 2022-02-04 16:53 Rev.: 18918


* keep logfiles for 2 weeks.

2 lines of code changed in 1 file:

  • SH: arb_launcher (+2 -2)
westram 2021-08-13 10:27 Rev.: 18664


* again install libxerces-c3.2 (tested with ubuntu 20.04)
- reverts [18102]

1 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+1 -2)
westram 2021-05-08 14:53 Rev.: 18648


* updated for ubuntu 20.04 (removed unknown package).

5 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+5 -2)
westram 2020-04-22 14:36 Rev.: 18439


* improve error exit from script (kill self).
* protect functions vs. wrong use (check param 3 of addpath; deny param 3 for append and prepend).
* quote several expressions (to allow installation paths containing spaces)
- arb is NOT intended to be installed into such paths! see also next commit.

41 lines of code changed in 1 file:

  • SH: arb (+41 -30)
westram 2020-03-07 16:47 Rev.: 18373


* reintegrates 'opengl' into 'trunk'
- fixes OPENGL build (using packages from distribution)
- fix several broken .png (1x crash, 16x warnings)
* adds: log:branches/opengl@18367:18372

5 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+5 -34)
westram 2020-02-26 18:46 Rev.: 18339


* full update from child 'fix' into 'trunk'
- fixes #754
* adds: log:branches/fix@18333:18338

36 lines of code changed in 2 files:

  • SH: README (+1), arb_macro_compatibility.sh (new 35)
westram 2020-02-26 18:36 Rev.: 18337


* partial merge from 'fix' into 'trunk'
- fix some warnings
- remove obsolete script
* adds: log:branches/fix@18331:18332

3 lines of code changed in 2 files:

  • SH: README (+3 -4), arb_ludwig (del)
westram 2019-09-18 16:12 Rev.: 18102


* remove libxerces-c3.2 dependency (invalid for 14.04)

2 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+2 -1)
westram 2019-03-26 11:00 Rev.: 17700


* add 'xed' to known editors

1 lines of code changed in 1 file:

  • SH: arb_textedit (+1 -1)
westram 2019-03-26 10:40 Rev.: 17699


* arb_textedit:
- if launching editor reports error => report error (to GUI) and mention {{{ARB_TEXTEDIT}}}
- log definition of ARB_TEXTEDIT to console

8 lines of code changed in 1 file:

  • SH: arb_textedit (+8 -3)
westram 2019-03-06 12:10 Rev.: 17645


update doxygen docs:

- updated obsolete setting using "doxygen -u".
- use Helvetica font for dot-gfx generated by doxygen.
- activates conf-mode in emacs.

1 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+1 -1)
westram 2018-11-25 19:19 Rev.: 17618


* full update from child 'fix' into 'trunk'
- fixes undefined variables in makefiles
- fixes perl tests
* adds: log:branches/fix@17599:17617

1 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+1 -1)
westram 2018-11-08 15:13 Rev.: 17601


* arb_installubuntu4arb.sh
- now works on Linux Mint 19
- should also work on ubuntu 18.04 (untested)
- dependencies for arb
* missing: libxm4 (run) + libboost-random-dev (build)
* outdated: libxerces-c3.1 -> libxerces-c3.2 (run)

7 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+7 -4)
westram 2018-11-08 11:01 Rev.: 17600


* split parameter into two parameters ('what' + 'openGL')
- rest should behave like before

82 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+82 -67)
westram 2017-11-28 18:22 Rev.: 16766


* reintegrates 'gcc' into 'trunk'
- mostly cosmetics changes
* adds: log:branches/gcc@16655,16741:16743,16752:16765

4 lines of code changed in 1 file:

  • SH: dszmconnect.pl (+4 -3)
westram 2017-10-03 17:50 Rev.: 16471


- correct indentation

16 lines of code changed in 1 file:

  • SH: arb_textedit (+16 -16)
westram 2017-10-03 17:26 Rev.: 16469


* reintegrates 'textedit' into 'trunk'
- fixes #586
* editor now always started asynchronously
* uses inotify to track file changes
- ~~also use inotify to track directory updates (in order to update file selections when needed)~~\\(./) by [16515] ff.; merged by [16551]
* adds: log:branches/textedit@16448:16468

65 lines of code changed in 1 file:

  • SH: arb_textedit (+65 -28)
westram 2017-09-19 13:40 Rev.: 16391


* full update from child 'aci' into 'trunk'
- allow to view console from inside ARB
- slightly tweaked ACI trace
* adds: log:branches/aci@16386:16390

52 lines of code changed in 3 files:

  • SH: arb_launcher (+2), arb_show_log.pl (new 49), arb_wait (+1 -1)
westram 2016-05-02 15:47 Rev.: 14798


* fix Ubuntu 16.04 build
- add gcc 5.3.1
* fix isnan/isinf use (only in testcode)
- fix libdepends in install-scripts and -READMEs

12 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+12 -9)
westram 2016-04-26 14:53 Rev.: 14770


* increase default size for xterms started from arb

2 lines of code changed in 2 files:

  • SH: arb (+1 -1), arb_textedit (+1 -1)
westram 2015-11-20 11:19 Rev.: 14509


* fix for #492
- call pt- and name-servers as daemons, i.e.
* do not forward any kill signals
* remove them from the joblist
* redirect their output into a logfile
- this is only done if arb is called from launcher
* trigger is envar {{{ARB_SERVER_LOG}}} (contains the name of the logfile used for daemon output)
* logfile gets tailed to console; tail is killed when launcher terminates => doesnt block

24 lines of code changed in 1 file:

  • SH: arb_launcher (+24 -2)
westram 2015-11-18 17:12 Rev.: 14501


* use argument quoting for
- NDS export (target file, print header and postscript output file)
- calling external editor (e.g. "edit macro file")
- calling macros (tested from GUI and CLI with {{{1'2"3.amc}}})
- canvas -> xfig/printer/postscript
- calling editor with user defined configuration name
- merge from/to arb database
- when passing DB name to ptserver
- to pass search expression to grep (while searching helpfiles)

2 lines of code changed in 1 file:

  • SH: arb_textedit (+2 -2)
westram 2015-11-12 11:26 Rev.: 14493


* arb_launcher
- added some debug messages; show debug messages
- wait for subshells in {{{listen_pipe_unlogged}}}
- call {{{arb_clean session}}} as soon as launcher thinks no arb process is running (basically fixes #492)

13 lines of code changed in 1 file:

  • SH: arb_launcher (+13 -2)
westram 2015-11-12 10:17 Rev.: 14492


* arb_clean
- renamed action 'targets' -> 'show_all'
- added new action 'show_session'
- both 'show_...'-actions use 'ps' to create process listing (instead of just dumping PIDs)

38 lines of code changed in 1 file:

  • SH: arb_clean (+38 -12)
westram 2015-10-10 12:27 Rev.: 14409


* fix links to ~~dev.mikro.biologie.tu-muenchen.de/debian~~

1 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+1 -1)
westram 2015-07-04 08:13 Rev.: 13966


* added libxerces-c dependency

4 lines of code changed in 1 file:

  • SH: arb_installubuntu4arb.sh (+4 -2)

(116 more)

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