Directory SH/

Lines of Code

Developers

Most Recent Commits

westram 2025-10-29 10:27 Rev.: 19549

* reintegrates 'sync' into 'trunk'
- fixes #869
* introduces synchronisation of external commands via DB
* macros now wait for these external commands to finish => macro can continue with results
* adds: log:branches/sync@19535:19548

18 lines of code changed in 1 file:

• SH: arb_wait (+18 -3)

westram 2025-08-07 17:27 Rev.: 19515

* allow to reduce the time-to-wait on error, by defining {{{ARB_SCRIPTED_SECS_WAIT_ON_ERROR}}}.

9 lines of code changed in 1 file:

• SH: arb_launcher (+9 -4)

westram 2024-02-05 11:50 Rev.: 19494

* collection of sysinfo terminated with error
- caused by undefined environment variable
- relevant info (like available memory) was not collected

2 lines of code changed in 1 file:

• SH: arb_launcher (+2 -2)

westram 2023-11-23 11:44 Rev.: 19492

* mention {{{libgomp1}}} (required by FastTreeMP)

1 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+1)

westram 2023-11-18 09:15 Rev.: 19491

* after detecting perl/macro-incompatibility, show OS-specific advice.

10 lines of code changed in 1 file:

• SH: arb_macro_compatibility.sh (+10)

westram 2023-07-11 09:52 Rev.: 19428

* add dependencies to {{{make}}} + {{{time}}}.
* call {{{apt-get}}} using {{{sudo}}} => support for limited sudo access.

4 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+4 -2)

westram 2022-10-27 13:59 Rev.: 19285

* again update prerequisites: use libxerces-c-dev
* also use changed prerequisites in {{{arb_INSTALL.txt}}}

1 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+1 -2)

westram 2022-10-27 13:18 Rev.: 19284

* fix prerequisites for motif library.

7 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+7 -2)

westram 2022-09-08 12:12 Rev.: 19269

* timeout 'read' command after 3 days
- avoids script zombies when not started from console.

6 lines of code changed in 1 file:

• SH: arb_launcher (+6 -2)

westram 2022-09-07 15:04 Rev.: 19268

* replace uses of {{{command -v}}}.

4 lines of code changed in 2 files:

• SH: arb_launcher (+1 -1), arb_sina.sh (+3 -1)

westram 2022-09-07 15:03 Rev.: 19267

* replace uses of {{{realpath}}}.

4 lines of code changed in 1 file:

• SH: arb_sina_install_from_fat_tarball.sh (+4 -2)

westram 2022-09-07 14:57 Rev.: 19265

* script to replace {{{realpath}}} and {{{command -v}}}.

90 lines of code changed in 1 file:

• SH: arb_path.sh (new 90)

westram 2022-09-05 15:06 Rev.: 19263

* {{{arb_sina.sh}}}:
- no longer echo everything.
* instead show that fat tarball has been detected and show effective {{{LD_LIBRARY_PATH}}}.
- option to show general info (instead of running sina).
* full path.
* dynamic library dependencies.
* sina version.
* log that info into sys.info from {{{arb_launcher}}}

29 lines of code changed in 2 files:

• SH: arb_launcher (+1), arb_sina.sh (+28 -3)

westram 2022-09-05 15:02 Rev.: 19262

* add 'View sysinfo' entry to arb 'Tools' menu.
- shows 'sys.info' generated by arb_launcher.
* document 'ARB session log archive'.

13 lines of code changed in 1 file:

• SH: arb_show_log.pl (+13 -5)

westram 2022-09-05 15:00 Rev.: 19261

* tweak logged system information:
- log date.
- window manager
* dump basic info (XDG_CURRENT_DESKTOP + GDMSESSION)
- link to posting which collects common combinations
* dump version info of a few known window managers (where binary found).

32 lines of code changed in 1 file:

• SH: arb_launcher (+32 -3)

westram 2022-09-02 14:50 Rev.: 19250

* fix sina install script
- allow optional third argument {{{--no-check}}} for NFS installation.
- handle more error cases.
- use absolute pathnames.

40 lines of code changed in 1 file:

• SH: arb_sina_install_from_fat_tarball.sh (+40 -22)

westram 2022-09-01 15:19 Rev.: 19245

* reintegrates 'sina' into 'trunk'
- build/deliver sina together with arb
* adds: log:branches/sina@18984:19043,19046:19069,19072:19244

132 lines of code changed in 3 files:

• SH: arb_installubuntu4arb.sh (+11 -1), arb_sina.sh (new 22), arb_sina_install_from_fat_tarball.sh (new 99)

westram 2022-05-20 08:39 Rev.: 19043

* only check for {{{makedepend}}} when dependencies are updated (not required for plain build).
* update requirements
- makedepend not required for compile (only for develop).
- opengl.

1 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+1 -1)

westram 2022-02-07 18:12 Rev.: 18927

* add 'arb_catlog' (cat file to stdout wrapped in delimiter lines).

12 lines of code changed in 1 file:

• SH: arb_catlog (new 12)

westram 2022-02-07 18:09 Rev.: 18926

* do not trace arb_raxml script.

1 lines of code changed in 1 file:

• SH: arb_raxml (+1 -1)

westram 2022-02-04 16:53 Rev.: 18918

* keep logfiles for 2 weeks.

2 lines of code changed in 1 file:

• SH: arb_launcher (+2 -2)

westram 2021-08-13 10:27 Rev.: 18664

* again install libxerces-c3.2 (tested with ubuntu 20.04)
- reverts [18102]

1 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+1 -2)

westram 2021-05-08 14:53 Rev.: 18648

* updated for ubuntu 20.04 (removed unknown package).

5 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+5 -2)

westram 2020-04-22 14:36 Rev.: 18439

* improve error exit from script (kill self).
* protect functions vs. wrong use (check param 3 of addpath; deny param 3 for append and prepend).
* quote several expressions (to allow installation paths containing spaces)
- arb is NOT intended to be installed into such paths! see also next commit.

41 lines of code changed in 1 file:

• SH: arb (+41 -30)

westram 2020-03-07 16:47 Rev.: 18373

* reintegrates 'opengl' into 'trunk'
- fixes OPENGL build (using packages from distribution)
- fix several broken .png (1x crash, 16x warnings)
* adds: log:branches/opengl@18367:18372

5 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+5 -34)

westram 2020-02-26 18:46 Rev.: 18339

* full update from child 'fix' into 'trunk'
- fixes #754
* adds: log:branches/fix@18333:18338

36 lines of code changed in 2 files:

• SH: README (+1), arb_macro_compatibility.sh (new 35)

westram 2020-02-26 18:36 Rev.: 18337

* partial merge from 'fix' into 'trunk'
- fix some warnings
- remove obsolete script
* adds: log:branches/fix@18331:18332

3 lines of code changed in 2 files:

• SH: README (+3 -4), arb_ludwig (del)

westram 2019-09-18 16:12 Rev.: 18102

* remove libxerces-c3.2 dependency (invalid for 14.04)

2 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+2 -1)

westram 2019-03-26 11:00 Rev.: 17700

* add 'xed' to known editors

1 lines of code changed in 1 file:

• SH: arb_textedit (+1 -1)

westram 2019-03-26 10:40 Rev.: 17699

* arb_textedit:
- if launching editor reports error => report error (to GUI) and mention {{{ARB_TEXTEDIT}}}
- log definition of ARB_TEXTEDIT to console

8 lines of code changed in 1 file:

• SH: arb_textedit (+8 -3)

westram 2019-03-06 12:10 Rev.: 17645

update doxygen docs:

- updated obsolete setting using "doxygen -u".
- use Helvetica font for dot-gfx generated by doxygen.
- activates conf-mode in emacs.

1 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+1 -1)

westram 2018-11-25 19:19 Rev.: 17618

* full update from child 'fix' into 'trunk'
- fixes undefined variables in makefiles
- fixes perl tests
* adds: log:branches/fix@17599:17617

1 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+1 -1)

westram 2018-11-08 15:13 Rev.: 17601

* arb_installubuntu4arb.sh
- now works on Linux Mint 19
- should also work on ubuntu 18.04 (untested)
- dependencies for arb
* missing: libxm4 (run) + libboost-random-dev (build)
* outdated: libxerces-c3.1 -> libxerces-c3.2 (run)

7 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+7 -4)

westram 2018-11-08 11:01 Rev.: 17600

* split parameter into two parameters ('what' + 'openGL')
- rest should behave like before

82 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+82 -67)

westram 2017-11-28 18:22 Rev.: 16766

* reintegrates 'gcc' into 'trunk'
- mostly cosmetics changes
* adds: log:branches/gcc@16655,16741:16743,16752:16765

4 lines of code changed in 1 file:

• SH: dszmconnect.pl (+4 -3)

westram 2017-10-03 17:50 Rev.: 16471

- correct indentation

16 lines of code changed in 1 file:

• SH: arb_textedit (+16 -16)

westram 2017-10-03 17:26 Rev.: 16469

* reintegrates 'textedit' into 'trunk'
- fixes #586
* editor now always started asynchronously
* uses inotify to track file changes
- ~~also use inotify to track directory updates (in order to update file selections when needed)~~\\(./) by [16515] ff.; merged by [16551]
* adds: log:branches/textedit@16448:16468

65 lines of code changed in 1 file:

• SH: arb_textedit (+65 -28)

westram 2017-09-19 13:40 Rev.: 16391

* full update from child 'aci' into 'trunk'
- allow to view console from inside ARB
- slightly tweaked ACI trace
* adds: log:branches/aci@16386:16390

52 lines of code changed in 3 files:

• SH: arb_launcher (+2), arb_show_log.pl (new 49), arb_wait (+1 -1)

westram 2016-05-02 15:47 Rev.: 14798

* fix Ubuntu 16.04 build
- add gcc 5.3.1
* fix isnan/isinf use (only in testcode)
- fix libdepends in install-scripts and -READMEs

12 lines of code changed in 1 file:

• SH: arb_installubuntu4arb.sh (+12 -9)

westram 2016-04-26 14:53 Rev.: 14770

* increase default size for xterms started from arb

2 lines of code changed in 2 files:

• SH: arb (+1 -1), arb_textedit (+1 -1)

(122 more)