Directory lib/inputMasks/

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westram 2019-03-04 14:22 Rev.: 17634

* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

1 lines of code changed in 1 file:

• lib/inputMasks: .gitignore (new 1)

westram 2009-03-16 14:11 Rev.: 5768

* rewrote genome importer
* remove redundant 'translation' entries of genes during import
* whole code is using
- 'pos_start' instead of 'pos_begin*'
- 'pos_stop' instead of 'pos_end*'
- 'pos_certain' instead of 'pos_uncertain*'
- 'pos_complement' instead of 'complement'
* convert gene locations in old genome DBs into new format
* added several gene functions to ARBDB
- GEN_create_nonexisting_gene...()
- GEN_find_or_create_gene..()
- GEN_global_gene_identifier()
* added code to handle gene locations into ARBDB (type GEN_position represents every flavour of a Genbank/EMBL feature location)
* added GBT_write_byte()
* rewrote GBT_read_gene_sequence() (adding GBT_read_gene_sequence_and_length)
* changed codon tables according to NCBI code info
- added start codon(s) for code 3, 9, 13
- changed code names
* when importing to a new DB, reset DB type if import fails (before ARB had to be restarted, after one try with wrong genome/non-genome import)

4 lines of code changed in 1 file:

• lib/inputMasks: gene_test.mask (+4 -8)

baderk 2008-07-16 16:24 Rev.: 5458

Removed .cvsignore files from repository. Hopefully this time all svn:ignore flags were set right.

0 lines of code changed in 1 file:

• lib/inputMasks: .cvsignore (del)

westram 2008-06-06 13:23 Rev.: 5390

- TAB-Ex

10 lines of code changed in 2 files:

• lib/inputMasks: main_fields.mask (+4 -4), main_seq_info.mask (+6 -6)

westram 2003-05-15 13:34 Rev.: 1404

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3 lines of code changed in 1 file:

• lib/inputMasks: .cvsignore (new 3)

westram 2002-12-04 14:58 Rev.: 1004

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76 lines of code changed in 2 files:

• lib/inputMasks: main_fields.mask (new 37), main_seq_info.mask (new 39)

westram 2002-01-09 20:02 Rev.: 467

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1 lines of code changed in 1 file:

• lib/inputMasks: test.mask (+1 -1)

westram 2001-10-18 10:29 Rev.: 312

fixes for compiling Solaris debugging version

1 lines of code changed in 1 file:

• lib/inputMasks: userInfo.mask (+1 -1)

westram 2001-10-02 07:47 Rev.: 302

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64 lines of code changed in 3 files:

• lib/inputMasks: basic_fields.mask (+1 -1), test.mask (+34 -2), userInfo.mask (new 29)

westram 2001-10-02 07:47 Rev.: 301

now a link to a help file

0 lines of code changed in 1 file:

• lib/inputMasks: format.readme (del)

westram 2001-09-07 14:31 Rev.: 293

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99 lines of code changed in 4 files:

• lib/inputMasks: basic_fields.mask (+6), experiment_example.mask (new 43), format.readme (+10 -1), gene_test.mask (new 40)

westram 2001-08-17 20:56 Rev.: 274

* test.mask: - added 'CHANGEMASK'

14 lines of code changed in 1 file:

• lib/inputMasks: test.mask (+14 -4)

westram 2001-08-17 20:55 Rev.: 273

* format.readme: - added 'NUMFIELD''
- added 'STARTMASK'
- changes 'STARTMASK' -> 'OPENMASK'
- added 'CHANGEMASK'

16 lines of code changed in 1 file:

• lib/inputMasks: format.readme (+16 -3)

westram 2001-08-17 20:55 Rev.: 272

* expert.mask: - copy from test.mask
- added 'NUMFIELD'

34 lines of code changed in 1 file:

• lib/inputMasks: expert.mask (new 34)

westram 2001-08-17 09:19 Rev.: 270

changes for user-masks (radio-buttons, survives deletes, etc.)

73 lines of code changed in 3 files:

• lib/inputMasks: basic_fields.mask (+5 -2), format.readme (+29 -6), test.mask (new 39)

westram 2001-08-16 07:52 Rev.: 262

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40 lines of code changed in 2 files:

• lib/inputMasks: basic_fields.mask (new 34), format.readme (new 6)