Directory ARBDBS/

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westram 2009-12-30 20:56 Rev.: 6318

* ARBDB
- compiles as C++ (no longer compiled as plain C)
- removed ARBDB2 + ARBDBS
- removed rotten C++-wrappers (ARBDBPP)
- generates special header for perl-interface to reduce dependencies (ad_p_prot.h)
* removed (ARBDB)
- gb_search_enum (merged with GB_TYPES)
* renamed (ARBDB)
- gbs_malloc_copy -> GB_memdup
- gb_search_types -> GB_SEARCH_TYPE + renamed enum-members
* tweaked perl interface
- code in ARBDB is now able to 'die' correctly (see GBP_croak_function)
- compiles as C++
- wrote generic functions for enum <-> string conversion (perl uses strings for enum values)
- added needed conversion functions
- removed handcoded xsubs (now all are generated by arb_proto_2_xsub - nevertheless, it's still possible to define xsubs manually)
- ARB::find and ARB::find_string (3rd parameter needs different values, only one file affected: PERL_SCRIPTS/GENOME/GI.pm - fixed)
- removed all functions using GBQUARK from perl interface
* perl interface generator (arb_proto_2_xsub)
- completely rewritten
- does automatic type conversion (expecting that the needed functions are defined in ARBDB/adperl.c)
* prototype generator
- compiles as C++
- switch -F accept's '!^' as beginning-of-name expression
* removed ARB_EDIT
- moved naligner interface code to EDIT4

0 lines of code changed in 1 file:

• ARBDBS: Makefile (del)

westram 2009-08-14 09:09 Rev.: 6140

* patch from Marek Stopka (see #136)

5 lines of code changed in 1 file:

• ARBDBS: Makefile (+5 -1)

westram 2009-06-05 19:18 Rev.: 6020

* splitted adtools.c into multiple files (no code change)

73 lines of code changed in 1 file:

• ARBDBS: Makefile (+73 -2)

westram 2009-05-24 10:29 Rev.: 5939

* moved non-GUI parts from AWT/AWT_changekey.cxx to ARBDB/adChangeKey.c
* added GBT_convert_changekey
* added 'Convert fields ...' to 'Fields'-menu

thx to Elmar

9 lines of code changed in 1 file:

• ARBDBS: Makefile (+9)

westram 2009-04-16 15:21 Rev.: 5825

* replaced GB_entry/GB_create/GB_search+GB_read_XXX by GBT_read_XXX
* improved error handling in many functions

2 lines of code changed in 1 file:

• ARBDBS: Makefile (+2)

westram 2009-04-09 10:57 Rev.: 5788

* rewrote regular expression code using POSIX extended regular expressions (from glibc)
- removed GBS_regsearch(), cause GBS_regmatch() does no longer return a heap-copy of the match. Instead it returns a pointer to the match and the length of the match.
- added functions for matching with precompiled regexpr (GBS_compile_regexpr,GBS_regmatch_compiled) or precompiled matcher (GBS_compile_matcher, GBS_string_matches_regexp)

0 lines of code changed in 1 file:

• ARBDBS: Makefile (-1)

westram 2009-04-08 10:49 Rev.: 5787

* moved string match/replace related functions from adstring.c to admatch.c

12 lines of code changed in 1 file:

• ARBDBS: Makefile (+12 -4)

westram 2008-12-31 13:27 Rev.: 5709

- made depends for [5708]

62 lines of code changed in 1 file:

• ARBDBS: Makefile (+62)

westram 2008-12-18 17:53 Rev.: 5659

- moved DB access for experiments to ARBDB

5 lines of code changed in 1 file:

• ARBDBS: Makefile (+5)

westram 2008-12-15 13:00 Rev.: 5646

* replaced GB_mergesort() and GBT_quicksort() by GB_sort()
* implemented GB_sort() using qsort(). current qsort is implemented as intronsort, which has mean AND worst case complexity O(N*log N), w/o the memory complexity of mergesort.
* fixed constness of compare function type (hash and array)
* added and using standard comparators (GB_string_comparator, GBS_HCF_sortedByKey)
* fixed/reimplemented several custom comparators

0 lines of code changed in 1 file:

• ARBDBS: Makefile (-2)

westram 2008-10-31 19:21 Rev.: 5564

* ARBDB/adtools.c: - tree reader uses struct TreeReader instead of static variables
- Unescape tree comment when reading newick tree
('\\', '\{' and '\}' are replaced by '\', '[' abd ']')
- now reads any length of comment (comment was restricted to 1024 characters)
* AWT/AWT_imp_exp.cxx: - Escape tree comment

0 lines of code changed in 1 file:

• ARBDBS: Makefile (-1)

westram 2008-05-13 15:42 Rev.: 5292

- depends updated

0 lines of code changed in 1 file:

• ARBDBS: Makefile (-1)

westram 2008-03-11 20:27 Rev.: 5230

- changed linker command
- depends updated

2 lines of code changed in 1 file:

• ARBDBS: Makefile (+2 -1)

westram 2008-02-28 12:18 Rev.: 5129

- depends updated

30 lines of code changed in 1 file:

• ARBDBS: Makefile (+30)

westram 2007-09-27 13:51 Rev.: 4868

- added POST_COMPILE where needed

2 lines of code changed in 1 file:

• ARBDBS: Makefile (+2 -2)

westram 2007-07-06 12:47 Rev.: 4704

- depends updated

11 lines of code changed in 1 file:

• ARBDBS: Makefile (+11)

westram 2007-05-30 15:39 Rev.: 4635

- added 'clean'

3 lines of code changed in 1 file:

• ARBDBS: Makefile (+3)

westram 2007-04-19 00:08 Rev.: 4484

- depends updated

11 lines of code changed in 1 file:

• ARBDBS: Makefile (+11)

westram 2005-05-24 18:01 Rev.: 3835

- added $(GB_X) to objects

9 lines of code changed in 1 file:

• ARBDBS: Makefile (+9 -1)

westram 2005-03-17 10:15 Rev.: 3761

- dependencies updated

3 lines of code changed in 1 file:

• ARBDBS: Makefile (+3)

westram 2004-11-18 15:07 Rev.: 3400

- depends updated

1 lines of code changed in 1 file:

• ARBDBS: Makefile (+1)

westram 2004-05-13 13:10 Rev.: 2743

dependencies updated

1 lines of code changed in 1 file:

• ARBDBS: Makefile (+1)

westram 2004-01-23 19:08 Rev.: 2338

fixed and reformatted dependencies (using fix_depends.pl)

213 lines of code changed in 1 file:

• ARBDBS: Makefile (+213 -62)

westram 2003-08-09 14:00 Rev.: 1617

- updated dependencies for all Makefiles
- rewrote dependency generation code. Only real changes
propagate into Makefiles - so it does no longer hurt to
call 'make depends' in ARB directory!

102 lines of code changed in 1 file:

• ARBDBS: Makefile (+102 -63)

westram 2003-06-24 16:18 Rev.: 1493

OSX patches

4 lines of code changed in 1 file:

• ARBDBS: Makefile (+4 -4)

westram 2002-10-09 13:21 Rev.: 887

make depend

15 lines of code changed in 1 file:

• ARBDBS: Makefile (+15 -15)

westram 2002-08-23 20:53 Rev.: 866

changed assert macros (see arb_assert.h)

50 lines of code changed in 1 file:

• ARBDBS: Makefile (+50 -360)

westram 2001-01-11 16:58 Rev.: 83

*** empty log message ***

64 lines of code changed in 1 file:

• ARBDBS: Makefile (+64 -189)

meierh 2001-01-11 16:24 Rev.: 80

haralds checkin

189 lines of code changed in 1 file:

• ARBDBS: Makefile (+189 -64)

westram 2001-01-04 16:36 Rev.: 68

Updated dependencies

161 lines of code changed in 1 file:

• ARBDBS: Makefile (+161 -62)

oldcode 2000-11-23 11:41 Rev.: 2

Initial revision

293 lines of code changed in 1 file:

• ARBDBS: Makefile (new 293)