Directory ARB_GDE/

Directory Created:
2000-11-23 11:41
Total Files:
16
Deleted Files:
2
Lines of Code:
4033

[root]/ARB_GDE

Lines of Code

ARB_GDE/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 597 (100.0%) 17336 (100.0%) 29.0
westram 571 (95.6%) 11644 (67.2%) 20.3
oldcode 13 (2.2%) 5480 (31.6%) 421.5
meierh 1 (0.2%) 171 (1.0%) 171.0
epruesse 9 (1.5%) 38 (0.2%) 4.2
boehnel 2 (0.3%) 3 (0.0%) 1.5
baderk 1 (0.2%) 0 (0.0%) 0.0

Most Recent Commits

westram 2019-04-05 19:32 Rev.: 17748


* remove hardcoded 'markCreated==true' from
- GBT_find_or_create_species_rel_species_data and
- GBT_find_or_create_species.
* hardcode 'markCreated==false' in GBT_find_or_create_SAI.
- changes result DB.
- increase diff buf size (result DB has loooong lines).

2 lines of code changed in 1 file:

  • ARB_GDE: GDE_event.cxx (+2 -2)
westram 2019-04-01 17:41 Rev.: 17724


* partial merge from 'fts' into 'trunk'
- {{{ConfigMapping}}}:
* cleanup
* add missing tests
* fix config bug: trailing backslash at end of values did cause wrong read of data
* adds: log:branches/fts@17718:17723

2 lines of code changed in 1 file:

  • ARB_GDE: Makefile (+2)
westram 2018-10-24 15:58 Rev.: 17534


* partial merge from 'fix' into 'trunk'
- globally define what are "gaps"
- kept behavioral changes to a minimum:
* defaults for (user-defined) gap-definition in EDIT4 changed
* EDIT sequence search also uses user-defined gaps
* adds: log:branches/fix@17529:17533

8 lines of code changed in 3 files:

  • ARB_GDE: GDE_arbdb_io.cxx (+3 -2), GDE_event.cxx (+3 -2), Makefile (+2)
westram 2018-09-20 18:43 Rev.: 17396


* reintegrates 'fix' into 'trunk'
- elim dead code
- use const hash loop
* adds: log:branches/fix@17380,17388:17395

55 lines of code changed in 3 files:

  • ARB_GDE: GDE_FileIO.cxx (+21 -20), GDE_ParseMenu.cxx (+34 -32), GDE_proto.h (-2)
westram 2018-07-10 16:48 Rev.: 17178


* reintegrates 'gcc' into 'trunk'
- complete arb port to gcc 8.1
- fixes NDEBUG-related issues (not handled by [16986])
* adds: log:branches/gcc@17164:17177

77 lines of code changed in 7 files:

  • ARB_GDE: GDE_FileIO.cxx (+2 -2), GDE_Genbank.cxx (+5 -5), GDE_ParseMenu.cxx (+9 -5), GDE_arbdb_io.cxx (+3 -3), GDE_def.h (+21 -5), GDE_event.cxx (+36 -45), Makefile (+1)
westram 2018-05-04 18:06 Rev.: 16986


* reintegrates 'gcc' into 'trunk'
- ports arb to gcc 8.1 (fixing warnings)
* adds: log:branches/gcc@16965:16985

Update: continued by [17178]

6 lines of code changed in 1 file:

  • ARB_GDE: GDE_ParseMenu.cxx (+6 -3)
westram 2017-11-28 19:22 Rev.: 16766


* reintegrates 'gcc' into 'trunk'
- mostly cosmetics changes
* adds: log:branches/gcc@16655,16741:16743,16752:16765

151 lines of code changed in 5 files:

  • ARB_GDE: GDE_FileIO.cxx (+30 -47), GDE_Genbank.cxx (+62 -95), GDE_HGLfile.cxx (+50 -108), GDE_arbdb_io.cxx (+1 -2), GDE_event.cxx (+8 -13)
westram 2017-11-28 18:09 Rev.: 16763


* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751

105 lines of code changed in 7 files:

  • ARB_GDE: GDE.cxx (+11 -11), GDE_FileIO.cxx (+18 -18), GDE_Genbank.cxx (+19 -15), GDE_HGLfile.cxx (+3 -3), GDE_ParseMenu.cxx (+24 -24), GDE_arbdb_io.cxx (+8 -8), GDE_event.cxx (+22 -22)
westram 2017-09-18 15:23 Rev.: 16374


* reintegrates 'aci' into 'trunk'
- refactored wide parts of ACI code (incl. SRT+REG)
* added more test
* ACI tracing
- more complete and readable
- automatically turned off when done with expression
* improved error messages (esp. diagnostics)
* documentation (updated, added missing)
* fixed a bunch of bugs (incl. SEGV and deadlock)
* ACI now runs inside execution environment
- ACI language may be extended with custom commands (implements #756)
* added ACI extension for group-batch-rename
* adds:
- log:branches/aci@16170:16373
- log:branches/addtest@16193:16316

4 lines of code changed in 2 files:

  • ARB_GDE: GDE_ParseMenu.cxx (+2 -2), GDE_event.cxx (+2 -2)
westram 2017-08-23 13:42 Rev.: 16237


* fix spelling for 'occurrence'

5 lines of code changed in 1 file:

  • ARB_GDE: GDE_ParseMenu.cxx (+5 -5)
westram 2016-12-06 15:37 Rev.: 15398


* partial merge from 'mladd' into 'trunk'
- GDE fixes
* adds: log:branches/mladd@15395,15397

6 lines of code changed in 1 file:

  • ARB_GDE: GDE.cxx (+6 -6)
westram 2016-09-27 16:23 Rev.: 15279


* reintegrates 'errhandle' into 'trunk'
* adds: log:branches/errhandle@15275:15278

5 lines of code changed in 1 file:

  • ARB_GDE: GDE_ParseMenu.cxx (+5 -4)
westram 2016-08-11 11:05 Rev.: 15176


* reintegrates 'fixres' into 'trunk'
- fixes #715
* adds: log:branches/fixres@15127:15175

95 lines of code changed in 9 files:

  • ARB_GDE: GDE.cxx (+1 -1), GDE_FileIO.cxx (+7 -52), GDE_Genbank.cxx (+15 -27), GDE_HGLfile.cxx (+3 -4), GDE_ParseMenu.cxx (+36 -55), GDE_arbdb_io.cxx (+15 -17), GDE_event.cxx (+10 -10), GDE_proto.h (+1 -3), Makefile (+7)
westram 2016-07-14 13:19 Rev.: 15050


* merge [15027] from 'color' into 'trunk'

2 lines of code changed in 1 file:

  • ARB_GDE: GDE.cxx (+2 -2)
westram 2015-12-16 16:13 Rev.: 14622


* reintegrates 'ui' into 'trunk'
- implements #656
- adds instant update for
* next neighbour search
* branch analysis (mark functions)
* arb-phylo (filter setup)
* adds: log:branches/ui@14588:14621

10 lines of code changed in 1 file:

  • ARB_GDE: GDE.cxx (+10 -43)
westram 2015-11-05 12:35 Rev.: 14474


* use typed callbacks for SAI-selectionbox-filter

2 lines of code changed in 1 file:

  • ARB_GDE: GDE.cxx (+2 -2)
westram 2015-11-04 18:14 Rev.: 14473


* remove unused AW_CL from {{{GDE_init}}}

6 lines of code changed in 5 files:

  • ARB_GDE: GDE.cxx (+2 -3), GDE_arbdb_io.cxx (+1 -2), GDE_menu.h (-1), GDE_proto.h (+1 -1), gde.hxx (+2 -3)
westram 2015-11-04 10:57 Rev.: 14453


* do not cast AW_POPDOWN

2 lines of code changed in 1 file:

  • ARB_GDE: GDE.cxx (+2 -2)
westram 2015-10-28 20:12 Rev.: 14435


* fix macro ids for GDE items (broken by [14433])

32 lines of code changed in 4 files:

  • ARB_GDE: GDE.cxx (+7 -3), GDE_ParseMenu.cxx (+1), GDE_menu.h (+8 -3), Makefile (+16)
westram 2015-10-28 18:37 Rev.: 14433


* use typed callbacks in ARB_GDE

21 lines of code changed in 3 files:

  • ARB_GDE: GDE.cxx (+19 -26), GDE_event.cxx (+1 -1), GDE_proto.h (+1 -1)
westram 2015-09-10 12:17 Rev.: 14281


* GDE commands failed to read sequence filter settings
- was broken by [14118]

11 lines of code changed in 3 files:

  • ARB_GDE: GDE.cxx (+4 -4), GDE_awars.h (+6 -3), GDE_event.cxx (+1 -1)
westram 2015-07-31 16:15 Rev.: 14118


* added {{{awt_create_filter_awars}}}
- made all awars 'tmp' (saving them did not work)

7 lines of code changed in 2 files:

  • ARB_GDE: GDE.cxx (+7 -9), GDE_awars.h (-7)
epruesse 2015-05-02 00:41 Rev.: 13797

fix spelling of likelihood

1 lines of code changed in 1 file:

  • ARB_GDE: GDE_ParseMenu.cxx (+1 -1)
westram 2015-04-30 14:47 Rev.: 13791


* remove CAP2
- antique
- broken since [11839] (at least)
- nobody complained

1 lines of code changed in 1 file:

  • ARB_GDE: GDE_ParseMenu.cxx (+1 -1)
westram 2015-04-29 15:33 Rev.: 13786


* replace init-by-memset for NA_Alignment

17 lines of code changed in 1 file:

  • ARB_GDE: GDE_event.cxx (+17 -9)
westram 2015-04-13 12:34 Rev.: 13713


* use typed callbacks for config-manager-setup

2 lines of code changed in 1 file:

  • ARB_GDE: GDE.cxx (+2 -4)
westram 2015-04-10 14:13 Rev.: 13704


* add config-managers to all GDE windows
- automatically handles any 'arg' defined in .menu files (if argtype != 'filename')
- changed layout (of all 3 gde .figs) to allow to place button for config-manager
- added warnings to gde_menus.hlp (which changes affect configs)

35 lines of code changed in 2 files:

  • ARB_GDE: GDE.cxx (+34), Makefile (+1)
westram 2015-04-10 11:04 Rev.: 13702


* avoid copy of {{{GmenuItemArg}}}; use ''const'' ref

7 lines of code changed in 2 files:

  • ARB_GDE: GDE.cxx (+6 -4), GDE_event.cxx (+1 -1)
westram 2015-04-10 10:53 Rev.: 13701


* formatting; locals

20 lines of code changed in 1 file:

  • ARB_GDE: GDE.cxx (+20 -21)
westram 2015-03-29 12:47 Rev.: 13625


* reintegrates 'pars' into 'trunk'
- fixes #528, #609, #620, #631, #633, #640, #641
- implements #619, #627
* adds:
- log:branches/addtest@13123:13260,13523:13551,13570
- log:branches/check@13365:13375,13450:13457
- log:branches/check2@13458:13465
- log:branches/fix@13522:13588
- log:branches/fixres@13270:13277,13279:13293,13295:13326
- log:branches/pars@12938:13280,13282:13325,13327:13387,13389:13527,13530:13624

1 lines of code changed in 1 file:

  • ARB_GDE: GDE_ParseMenu.cxx (+1 -1)
westram 2015-03-24 16:35 Rev.: 13601


* fix useless 'menumeta has inconsistent definitions' error (occurred e.g. when menu-redefinition was lacking 'menumeta')

11 lines of code changed in 1 file:

  • ARB_GDE: GDE_ParseMenu.cxx (+11 -2)
westram 2015-03-24 16:17 Rev.: 13600


* fix unittest for [13598]

4 lines of code changed in 1 file:

  • ARB_GDE: GDE_ParseMenu.cxx (+4 -4)
westram 2015-01-23 15:19 Rev.: 13443


* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

1 lines of code changed in 1 file:

  • ARB_GDE: Makefile (+1 -1)
westram 2014-11-06 15:51 Rev.: 13134


- fix warnings reported by NDEBUG compilation

2 lines of code changed in 2 files:

  • ARB_GDE: GDE.cxx (-2), GDE_event.cxx (+2 -1)
westram 2014-10-17 12:59 Rev.: 13069


* reintegrates 'sativa' into 'trunk'
- adds experimental version of SATIVA
* adds:
- log:branches/sativa@12886:13068

1 lines of code changed in 1 file:

  • ARB_GDE: GDE_ParseMenu.cxx (+1 -1)
westram 2014-10-13 17:34 Rev.: 13044


* revert [13041:13043]
- instead forbid gcc 4.8.0

2 lines of code changed in 1 file:

  • ARB_GDE: GDE_arbdb_io.cxx (+2 -2)
westram 2014-10-12 17:18 Rev.: 13043


* ~~harden patches [13041:13042]~~
- ~~add safebool (=bool for non 4.8.0)~~
- ~~use in all bool-arrays~~

(reverted by [13044])

2 lines of code changed in 1 file:

  • ARB_GDE: GDE_arbdb_io.cxx (+2 -2)
westram 2014-09-23 12:10 Rev.: 12926


* remove {{{at_set_min_size()}}} (unused)
* remove last (external) call to {{{set_window_size()}}} (from GDE; already implicitely called via {{{load_xfig}}} just above)
* sync in {{{load_xfig}}}
* mark more functions of AW_window as local (IN_ARB_WINDOW)

0 lines of code changed in 1 file:

  • ARB_GDE: GDE.cxx (-1)
westram 2014-09-04 17:28 Rev.: 12834


* reintegrates 'fix' into 'trunk'
- fixing #504
* adds:
- log:branches/fix@12806,12812:12818,12820:12822,12828:12833

282 lines of code changed in 8 files:

  • ARB_GDE: GDE.cxx (+4 -3), GDE_ParseMenu.cxx (+20 -8), GDE_def.h (+3 -2), GDE_event.cxx (+244 -54), GDE_menu.h (+6 -4), GDE_proto.h (+1 -1), Makefile (+1), gde.hxx (+3 -1)
westram 2014-09-04 17:14 Rev.: 12833


* merge [12811] [12822:12827] from 'fix' into 'trunk'
- separates refactorings done for #504
* adds:
- log:branches/fix@12811,12823:12827

219 lines of code changed in 8 files:

  • ARB_GDE: GDE.cxx (+2 -5), GDE_FileIO.cxx (+100 -137), GDE_Genbank.cxx (+28 -31), GDE_HGLfile.cxx (+5 -7), GDE_arbdb_io.cxx (+22 -28), GDE_def.h (+7 -5), GDE_event.cxx (+47 -70), GDE_proto.h (+8 -8)

(252 more)

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