Directory GDEHELP/HELP_WRITTEN/

Directory Created:
2008-03-14 14:42
Total Files:
8
Deleted Files:
0
Lines of Code:
750

[root]/GDEHELP/HELP_WRITTEN

Lines of Code

GDEHELP/HELP_WRITTEN/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 21 (100.0%) 815 (100.0%) 38.8
westram 15 (71.4%) 431 (52.9%) 28.7
aboeckma 4 (19.0%) 382 (46.9%) 95.5
epruesse 2 (9.5%) 2 (0.2%) 1.0

Most Recent Commits

westram 2017-10-27 16:33 Rev.: 16575


* mention raxml versions numbers (in help and menus)

3 lines of code changed in 2 files:

  • GDEHELP/HELP_WRITTEN: raxml.help (+2), raxml8.help (+1)
westram 2016-12-17 13:12 Rev.: 15425


* reintegrates 'mladd' into 'trunk'
- improves raxml8 interface
* new functions
- score tree (=calculate likelihood and append to comment)
- calculate branchlengths
- optimize tree
- add to tree (implements #681)
* calculate bootstraps (as separate function or combined with other functions)
- allow to skip bootstrap calculation
* writes comment to generated trees (similar to raxml7-interface)
* fix key-wait on terminate
* time all functions
* fix thread usage
- use 'distinct alignment patterns' (as reported by RAxML) to select maximum threads
- slightly reduce threads in favor of asynchronous bootstrapping
- allow to override (used) cores and used threads separate
- adds {{{arb_write_tree_comment}}}
* adds: log:branches/mladd@15394,15396,15398:15424

89 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: raxml8.help (+89 -27)
westram 2016-12-05 17:03 Rev.: 15392


* reintegrates 'mladd' into 'trunk'
- adds help for RAxML8 integration (#623)
- remove default "non-random seed"
- fixes warnings about unrecommended use (messages where truncated; GTRGAMMA warning never showed up; GTRCAT warning always popped up)
- fixes CPU cores detection (broken by [14939])
* adds: log:branches/mladd@15377:15391

99 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: raxml8.help (new 99)
westram 2015-12-16 16:13 Rev.: 14622


* reintegrates 'ui' into 'trunk'
- implements #656
- adds instant update for
* next neighbour search
* branch analysis (mark functions)
* arb-phylo (filter setup)
* adds: log:branches/ui@14588:14621

2 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: MrBayes.help (+2 -2)
westram 2015-07-24 16:17 Rev.: 14080


* move sativa help template

15 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: sativa.help (new 15)
epruesse 2015-05-02 00:41 Rev.: 13797

fix spelling of likelihood

2 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: raxml.help (+2 -2)
westram 2014-07-17 11:25 Rev.: 12526


- remove broken help

0 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: raxml8.help (del)
epruesse 2014-07-16 23:26 Rev.: 12525

- add help for raxml8
- import normal tree also in quick mode
- check against too many/few sequences for model

0 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: raxml8.help (new)
westram 2013-10-18 14:22 Rev.: 10842


* reintegrates 'help' into 'trunk':
* adds:
- log:branches/help@10647:10841
- log:branches/helptest@10704:10720

4 lines of code changed in 2 files:

  • GDEHELP/HELP_WRITTEN: MrBayesCustom.help (+1 -1), phyml-20130708.help (+3 -2)
westram 2013-09-17 15:07 Rev.: 10596


* fixed layout (of resulting html output)

42 lines of code changed in 3 files:

  • GDEHELP/HELP_WRITTEN: MrBayes.help (+27 -17), MrBayesCustom.help (+2 -1), phyml-20130708.help (+13 -13)
aboeckma 2013-08-15 11:37 Rev.: 10455

Added !MrBayes custom command file menu

44 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: MrBayesCustom.help (new 44)
aboeckma 2013-08-15 10:12 Rev.: 10454

Added !MrBayes help

97 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: MrBayes.help (new 97)
aboeckma 2013-08-02 10:40 Rev.: 10403

minimalistic help file for mafft

81 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: mafft.help (new 81)
aboeckma 2013-07-23 13:21 Rev.: 10340

added phyml-20130708 help

160 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: phyml-20130708.help (new 160)
westram 2009-06-16 13:40 Rev.: 6064


- added RAxML bug to help

8 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: raxml.help (+8)
westram 2008-03-14 14:42 Rev.: 5255

- help for RAxML

162 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: raxml.help (new 162)
westram 2008-03-14 14:42 Rev.: 5254

- info about helpfiles here

7 lines of code changed in 1 file:

  • GDEHELP/HELP_WRITTEN: Readme (new 7)
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