/trunk Developers: epruesse

Login name:
epruesse
Total Commits:
342 (0.7%)
Lines of Code:
5,515 (0.2%)
Most Recent Commit:
2019-02-17 07:06
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Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 342 (100.0%) 5515 (100.0%) 16.1
GFX/ 2 (0.6%) 1079 (19.6%) 539.5
BINDINGS/PERL/ 4 (1.2%) 1028 (18.6%) 257.0
CORE/ 23 (6.7%) 599 (10.9%) 26.0
GDE/RAxML8/ 25 (7.3%) 598 (10.8%) 23.9
ARBDB/ 25 (7.3%) 540 (9.8%) 21.6
/ 33 (9.6%) 281 (5.1%) 8.5
BINDINGS/ 3 (0.9%) 269 (4.9%) 89.6
EDIT4/ 18 (5.3%) 179 (3.2%) 9.9
BINDINGS/PYTHON/ 4 (1.2%) 147 (2.7%) 36.7
util/ 12 (3.5%) 101 (1.8%) 8.4
SL/SEQUENCE/ 3 (0.9%) 99 (1.8%) 33.0
SH/ 7 (2.0%) 67 (1.2%) 9.5
NTREE/ 16 (4.7%) 63 (1.1%) 3.9
ARB_GDE/ 9 (2.6%) 38 (0.7%) 4.2
TOOLS/ 19 (5.6%) 37 (0.7%) 1.9
UNIT_TESTER/ 10 (2.9%) 35 (0.6%) 3.5
AWT/ 13 (3.8%) 32 (0.6%) 2.4
AISC_COM/C/ 7 (2.0%) 28 (0.5%) 4.0
SL/TREEDISP/ 6 (1.8%) 27 (0.5%) 4.5
PERL_SCRIPTS/ARBTOOLS/ 2 (0.6%) 27 (0.5%) 13.5
SL/FILTER/ 2 (0.6%) 24 (0.4%) 12.0
SL/DB_UI/ 2 (0.6%) 24 (0.4%) 12.0
lib/desktop/ 6 (1.8%) 23 (0.4%) 3.8
PROBE/ 5 (1.5%) 19 (0.3%) 3.8
lib/pictures/ 1 (0.3%) 14 (0.3%) 14.0
GDE/ 3 (0.9%) 13 (0.2%) 4.3
WINDOW/ 7 (2.0%) 10 (0.2%) 1.4
GDE/MrBAYES/mrbayes_3.2.1/ 2 (0.6%) 9 (0.2%) 4.5
SOURCE_TOOLS/ 6 (1.8%) 8 (0.1%) 1.3
SL/AW_HELIX/ 2 (0.6%) 7 (0.1%) 3.5
DIST/ 2 (0.6%) 7 (0.1%) 3.5
SL/DB_QUERY/ 3 (0.9%) 6 (0.1%) 2.0
HELP_SOURCE/oldhelp/ 3 (0.9%) 6 (0.1%) 2.0
WETC/ 2 (0.6%) 5 (0.1%) 2.5
PHYLO/ 2 (0.6%) 5 (0.1%) 2.5
GDE/MAFFT/ 1 (0.3%) 5 (0.1%) 5.0
SL/PTCLEAN/ 1 (0.3%) 4 (0.1%) 4.0
AISC_COM/AISC/ 2 (0.6%) 4 (0.1%) 2.0
lib/ 2 (0.6%) 3 (0.1%) 1.5
GENOM/ 1 (0.3%) 3 (0.1%) 3.0
GDE/PHYML20130708/ 1 (0.3%) 3 (0.1%) 3.0
GDE/CLUSTAL/ 1 (0.3%) 3 (0.1%) 3.0
SL/NDS/ 2 (0.6%) 2 (0.0%) 1.0
PGT/ 1 (0.3%) 2 (0.0%) 2.0
PARSIMONY/ 2 (0.6%) 2 (0.0%) 1.0
NALIGNER/ 1 (0.3%) 2 (0.0%) 2.0
GDEHELP/HELP_WRITTEN/ 2 (0.6%) 2 (0.0%) 1.0
GDEHELP/ 1 (0.3%) 2 (0.0%) 2.0
CONVERTALN/ 2 (0.6%) 2 (0.0%) 1.0
AISC_MKPTPS/ 2 (0.6%) 2 (0.0%) 1.0
TREEGEN/ 1 (0.3%) 1 (0.0%) 1.0
TEMPLATES/ 1 (0.3%) 1 (0.0%) 1.0
STAT/ 1 (0.3%) 1 (0.0%) 1.0
SL/REFENTRIES/ 1 (0.3%) 1 (0.0%) 1.0
SL/FAST_ALIGNER/ 1 (0.3%) 1 (0.0%) 1.0
SL/AW_NAME/ 1 (0.3%) 1 (0.0%) 1.0
PROBE_SET/ 1 (0.3%) 1 (0.0%) 1.0
PROBE_DESIGN/ 1 (0.3%) 1 (0.0%) 1.0
PRIMER_DESIGN/ 1 (0.3%) 1 (0.0%) 1.0
PERLTOOLS/ 1 (0.3%) 1 (0.0%) 1.0
PERL2ARB/ 1 (0.3%) 1 (0.0%) 1.0
NAMES/ 1 (0.3%) 1 (0.0%) 1.0
MERGE/ 1 (0.3%) 1 (0.0%) 1.0
HELP_SOURCE/ 1 (0.3%) 1 (0.0%) 1.0
GDEHELP/MENUS/ 1 (0.3%) 1 (0.0%) 1.0
GDE/PROBCONS/probcons/ 1 (0.3%) 1 (0.0%) 1.0
GDE/PHYLIP/ 1 (0.3%) 1 (0.0%) 1.0
GDE/MrBAYES/ 1 (0.3%) 1 (0.0%) 1.0
GDE/CLUSTALW/ 1 (0.3%) 1 (0.0%) 1.0
DBSERVER/ 1 (0.3%) 1 (0.0%) 1.0
lib/pictures/cpro/ 5 (1.5%) 0 (0.0%) 0.0
XML/ 2 (0.6%) 0 (0.0%) 0.0
PROBE_COM/ 2 (0.6%) 0 (0.0%) 0.0
NAMES_COM/ 1 (0.3%) 0 (0.0%) 0.0
AWTI/ 1 (0.3%) 0 (0.0%) 0.0

Activity of epruesse

Most Recent Commits

epruesse 2019-02-17 07:06 Rev.: 17625

Honor $AR env variable if set (make defaults to 'ar')

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
epruesse 2019-02-17 07:05 Rev.: 17624

Add xerces-c-dev to ubuntu build deps

1 lines of code changed in 1 file:

  • arb_UBUNTU.txt (+1)
epruesse 2018-09-06 01:45 Rev.: 17354

Only use Inotify on Linux

OSX has FSEvents instead

3 lines of code changed in 1 file:

  • WINDOW: AW_inotify.cxx (+3 -2)
epruesse 2017-03-22 21:19 Rev.: 15656

Allow skipping individual tool builds

Tools built and distributed with ARB can be skipped if their folder name
is found within ARB_BUILD_SKIP_PKGS.

4 lines of code changed in 1 file:

  • GDE: Makefile (+4)
epruesse 2017-03-22 21:17 Rev.: 15655

Add comments about pkg-config

7 lines of code changed in 1 file:

  • Makefile (+7)
epruesse 2016-11-19 01:56 Rev.: 15367

revert ... misunderstood the meaning of the file name ...

59 lines of code changed in 2 files:

  • arb_PUBLIB_LICENSE.txt (new 59), arb_PUBLIC_LICENSE.txt (del)
epruesse 2016-11-19 01:55 Rev.: 15366

fix filename

0 lines of code changed in 2 files:

  • arb_PUBLIB_LICENSE.txt (del), arb_PUBLIC_LICENSE.txt (new)
epruesse 2016-06-14 20:17 Rev.: 14939

update RAxML8 GDE gui + script
- silence grep and which (printed to stderr as side effect)
- detect cpu core limit for Torque/PBS jobs
- make building and importing the MRE tree optional
- allow giving the tree a name (rather than default importing as tree_raxml)

53 lines of code changed in 2 files:

  • GDE/RAxML8: arb_raxml8.sh (+41 -15), raxml8.menu (+12 -1)
epruesse 2016-06-14 20:00 Rev.: 14938

update RAxML to 8.2.8

0 lines of code changed in 2 files:

  • GDE/RAxML8: standard-RAxML-8.0.26.tar.gz (del), standard-RAxML-8.2.8.tar.gz (new)
epruesse 2016-06-13 23:33 Rev.: 14934

Merge r14911:14914,r14933 -- additional path options for build system

- allow overriding X11 include/lib path from config.makefile
- add Makefile variables XML_INCLUDES and XAW_LIBS

Allows setting explicit paths for those libs by adding lines to
config.makefile like so:

export XLIBS=$(shell pkg-config --libs xpm xerces-c)
export XML_INCLUDES=$(shell pkg-config --cflags xerces-c)
export XAW_LIBS=$(shell pkg-config --libs xaw7)
------------------------------------------------------------------------

6 lines of code changed in 3 files:

  • Makefile (+4 -3)
  • GDE/PHYLIP: Makefile (+1 -1)
  • PROBE_DESIGN: Makefile (+1 -1)
epruesse 2015-11-23 23:23 Rev.: 14525

fix unit test for shell expansion for OSX

`wc -c` on OSX reports characters with leading whitespace
=> added `| tr -d ' '` to get rid of space chars if they exist

3 lines of code changed in 1 file:

  • CORE: arb_msg.cxx (+3 -1)
epruesse 2015-11-23 01:52 Rev.: 14520

only save to temporary file if output file not a fifo

this allows passing named pipes as argument for saving ARB files

11 lines of code changed in 1 file:

  • ARBDB: ad_save_load.cxx (+11 -4)
epruesse 2015-11-23 01:51 Rev.: 14519

add GB_is_fifo(filepath), testing if a file is a named pipe

7 lines of code changed in 2 files:

  • CORE: arb_file.cxx (+6), arb_file.h (+1)
epruesse 2015-11-23 01:31 Rev.: 14518

/tmp is a symlink on OSX, use /sbin to test directory

1 lines of code changed in 1 file:

  • ARBDB: adsocket.cxx (+1 -1)
epruesse 2015-08-27 03:23 Rev.: 14219

also allow archive lines in c++filt output

example line:
/path/to/arb/MODULE/MODULE.a(MOD_dothething.o):

2 lines of code changed in 1 file:

  • UNIT_TESTER: sym2testcode.pl (+2 -1)
epruesse 2015-08-27 02:56 Rev.: 14218

also check "_LIBCPP_STRING" to determine if std:string loaded

1 lines of code changed in 1 file:

  • UNIT_TESTER: test_unit.h (+1 -1)
epruesse 2015-08-27 02:13 Rev.: 14217

fix warning

1 lines of code changed in 1 file:

  • TEMPLATES: static_assert.h (+1 -1)
epruesse 2015-08-27 02:12 Rev.: 14216

add gcc 4.6.4

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
epruesse 2015-05-02 00:41 Rev.: 13797

fix spelling of likelihood

36 lines of code changed in 7 files:

  • ARB_GDE: GDE_ParseMenu.cxx (+1 -1)
  • GDE/RAxML8: raxml8.menu (+1 -1)
  • GDEHELP: ARB_GDEmenus.source (+2 -2)
  • GDEHELP/HELP_WRITTEN: raxml.help (+2 -2)
  • HELP_SOURCE/oldhelp: chimera_check.hlp (+2 -2)
  • NTREE: NT_extern.cxx (+2 -2)
  • PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+26 -26)
epruesse 2014-10-26 11:22 Rev.: 13093

remove noinhibit from linker options again

0 lines of code changed in 1 file:

  • Makefile (-8)

(141 more)

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