/trunk Developers: epruesse

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epruesse 2019-02-17 06:06 Rev.: 17625

Honor $AR env variable if set (make defaults to 'ar')

1 lines of code changed in 1 file:

• Makefile (+1 -1)

epruesse 2019-02-17 06:05 Rev.: 17624

Add xerces-c-dev to ubuntu build deps

1 lines of code changed in 1 file:

• arb_UBUNTU.txt (+1)

epruesse 2018-09-06 00:45 Rev.: 17354

Only use Inotify on Linux

OSX has FSEvents instead

3 lines of code changed in 1 file:

• WINDOW: AW_inotify.cxx (+3 -2)

epruesse 2017-03-22 20:19 Rev.: 15656

Allow skipping individual tool builds

Tools built and distributed with ARB can be skipped if their folder name
is found within ARB_BUILD_SKIP_PKGS.

4 lines of code changed in 1 file:

• GDE: Makefile (+4)

epruesse 2017-03-22 20:17 Rev.: 15655

Add comments about pkg-config

7 lines of code changed in 1 file:

• Makefile (+7)

epruesse 2016-11-19 00:56 Rev.: 15367

revert ... misunderstood the meaning of the file name ...

59 lines of code changed in 2 files:

• arb_PUBLIB_LICENSE.txt (new 59), arb_PUBLIC_LICENSE.txt (del)

epruesse 2016-11-19 00:55 Rev.: 15366

fix filename

0 lines of code changed in 2 files:

• arb_PUBLIB_LICENSE.txt (del), arb_PUBLIC_LICENSE.txt (new)

epruesse 2016-06-14 19:17 Rev.: 14939

update RAxML8 GDE gui + script
- silence grep and which (printed to stderr as side effect)
- detect cpu core limit for Torque/PBS jobs
- make building and importing the MRE tree optional
- allow giving the tree a name (rather than default importing as tree_raxml)

53 lines of code changed in 2 files:

• GDE/RAxML8: arb_raxml8.sh (+41 -15), raxml8.menu (+12 -1)

epruesse 2016-06-14 19:00 Rev.: 14938

update RAxML to 8.2.8

0 lines of code changed in 2 files:

• GDE/RAxML8: standard-RAxML-8.0.26.tar.gz (del), standard-RAxML-8.2.8.tar.gz (new)

epruesse 2016-06-13 22:33 Rev.: 14934

Merge r14911:14914,r14933 -- additional path options for build system

- allow overriding X11 include/lib path from config.makefile
- add Makefile variables XML_INCLUDES and XAW_LIBS

Allows setting explicit paths for those libs by adding lines to
config.makefile like so:

export XLIBS=$(shell pkg-config --libs xpm xerces-c)
export XML_INCLUDES=$(shell pkg-config --cflags xerces-c)
export XAW_LIBS=$(shell pkg-config --libs xaw7)
------------------------------------------------------------------------

6 lines of code changed in 3 files:

• Makefile (+4 -3)
• GDE/PHYLIP: Makefile (+1 -1)
• PROBE_DESIGN: Makefile (+1 -1)

epruesse 2015-11-23 22:23 Rev.: 14525

fix unit test for shell expansion for OSX

`wc -c` on OSX reports characters with leading whitespace
=> added `| tr -d ' '` to get rid of space chars if they exist

3 lines of code changed in 1 file:

• CORE: arb_msg.cxx (+3 -1)

epruesse 2015-11-23 00:52 Rev.: 14520

only save to temporary file if output file not a fifo

this allows passing named pipes as argument for saving ARB files

11 lines of code changed in 1 file:

• ARBDB: ad_save_load.cxx (+11 -4)

epruesse 2015-11-23 00:51 Rev.: 14519

add GB_is_fifo(filepath), testing if a file is a named pipe

7 lines of code changed in 2 files:

• CORE: arb_file.cxx (+6), arb_file.h (+1)

epruesse 2015-11-23 00:31 Rev.: 14518

/tmp is a symlink on OSX, use /sbin to test directory

1 lines of code changed in 1 file:

• ARBDB: adsocket.cxx (+1 -1)

epruesse 2015-08-27 02:23 Rev.: 14219

also allow archive lines in c++filt output

example line:
/path/to/arb/MODULE/MODULE.a(MOD_dothething.o):

2 lines of code changed in 1 file:

• UNIT_TESTER: sym2testcode.pl (+2 -1)

epruesse 2015-08-27 01:56 Rev.: 14218

also check "_LIBCPP_STRING" to determine if std:string loaded

1 lines of code changed in 1 file:

• UNIT_TESTER: test_unit.h (+1 -1)

epruesse 2015-08-27 01:13 Rev.: 14217

fix warning

1 lines of code changed in 1 file:

• TEMPLATES: static_assert.h (+1 -1)

epruesse 2015-08-27 01:12 Rev.: 14216

add gcc 4.6.4

1 lines of code changed in 1 file:

• Makefile (+1 -1)

epruesse 2015-05-01 23:41 Rev.: 13797

fix spelling of likelihood

36 lines of code changed in 7 files:

• ARB_GDE: GDE_ParseMenu.cxx (+1 -1)
• GDE/RAxML8: raxml8.menu (+1 -1)
• GDEHELP: ARB_GDEmenus.source (+2 -2)
• GDEHELP/HELP_WRITTEN: raxml.help (+2 -2)
• HELP_SOURCE/oldhelp: chimera_check.hlp (+2 -2)
• NTREE: NT_extern.cxx (+2 -2)
• PERL_SCRIPTS/ARBTOOLS: raxml2arb.pl (+26 -26)

epruesse 2014-10-26 10:22 Rev.: 13093

remove noinhibit from linker options again

0 lines of code changed in 1 file:

• Makefile (-8)

(141 more)