Development Statistics for /trunk

Lines of Code

Top 10 Authors

Tag Cloud of Words in Commit Log Messages

about adds alignment allow always assertion avoid awar before branches broken build button call callback change check cleanup code color command comment config create data debug default define delete depend display duplicate empty error export fail field file fixed fixes format function generate global group help include instead interface line link list longer macro made make makefile menu merge message miss mode move name only parameter position print probe prototype reintegrate remove rename replace result return save search selection sequence server several size species target test tree trunk type unit unused update uses using value variable version warn window wrong

Directories

[root] (17 files, 7597 lines)
     AISC (16 files, 3904 lines)
     AISC_COM (1 files, 16 lines)
         AISC (8 files, 2074 lines)
         C (15 files, 2740 lines)
     AISC_MKPTPS (4 files, 1872 lines)
     ALEIO (0 files, 0 lines)
     ALIV3 (0 files, 0 lines)
     ARBDB (85 files, 45430 lines)
         EXAMPLES (0 files, 0 lines)
     ARBDB2 (0 files, 0 lines)
     ARBDBPP (0 files, 0 lines)
     ARBDBS (0 files, 0 lines)
     ARBDB_COMPRESS (0 files, 0 lines)
     ARB_GDE (16 files, 4031 lines)
     AWDEMO (0 files, 0 lines)
     AWT (32 files, 12285 lines)
     AWTC (6 files, 1048 lines)
     AWTI (10 files, 3131 lines)
     BERGEY (0 files, 0 lines)
     BINDEP (37 files, 171 lines)
     BINDINGS (2 files, 267 lines)
         PERL (4 files, 1028 lines)
         PYTHON (4 files, 147 lines)
     BUGEX (1 files, 188 lines)
     CAT (0 files, 0 lines)
     CHIP (0 files, 0 lines)
     CONSENSUS_TREE (13 files, 2235 lines)
     CONVERTALN (36 files, 6595 lines)
     CORE (50 files, 9289 lines)
     DBSERVER (3 files, 561 lines)
     DIST (19 files, 7356 lines)
     DUMMYINC (0 files, 0 lines)
     EDIT (0 files, 0 lines)
     EDIT4 (51 files, 28718 lines)
     EISPACK (7 files, 29479 lines)
     GDE (2 files, 145 lines)
         AxML (5 files, 5977 lines)
         CLUSTAL (13 files, 4954 lines)
         CLUSTALW (33 files, 21348 lines)
         CORE (0 files, 0 lines)
         FASTDNAML (7 files, 6447 lines)
         FASTTREE (3 files, 10124 lines)
         HGL_SRC (0 files, 0 lines)
         LOOPTOOL (0 files, 0 lines)
         MAFFT (1 files, 55 lines)
             mafft-7.053-without-extensions (0 files, 0 lines)
                 core (0 files, 0 lines)
                 scripts (0 files, 0 lines)
             mafft-7.055-with-extensions (4 files, 309 lines)
                 core (90 files, 75630 lines)
                 extensions (3 files, 72 lines)
                     mxscarna_src (21 files, 6911 lines)
                         probconsRNA (20 files, 7594 lines)
                         vienna (6 files, 11842 lines)
         MOLPHY (0 files, 0 lines)
             doc (0 files, 0 lines)
             utl (0 files, 0 lines)
         MUSCLE (1 files, 38 lines)
             src (190 files, 34747 lines)
                 unused (3 files, 548 lines)
         MrBAYES (1 files, 45 lines)
             mrbayes_3.2.1 (31 files, 114639 lines)
         PHYLIP (66 files, 71352 lines)
             doc (42 files, 21478 lines)
         PHYML (22 files, 15180 lines)
         PHYML20130708 (2 files, 64 lines)
             phyml (18 files, 22761 lines)
                 bin (0 files, 0 lines)
                 doc (17 files, 24532 lines)
                 examples (5 files, 1255 lines)
                     lg4x (5 files, 142 lines)
                 src (68 files, 78797 lines)
         PROBCONS (1 files, 23 lines)
             probcons (17 files, 6323 lines)
         RAxML (31 files, 72525 lines)
         RAxML8 (5 files, 702 lines)
         SATIVA (5 files, 493 lines)
             sativa (3 files, 1494 lines)
                 epac (8 files, 2380 lines)
                     ete2 (1 files, 185 lines)
         SUPPORT (10 files, 2584 lines)
         TREEPUZZLE (6 files, 854 lines)
             data (0 files, 0 lines)
             doc (3 files, 1653 lines)
             src (18 files, 17676 lines)
     GDEHELP (10 files, 774 lines)
         DATA_FILES (0 files, 0 lines)
         FASTA (0 files, 0 lines)
             GENBANK (1 files, 1500 lines)
             MATRIX (9 files, 258 lines)
         HELP_PLAIN (3 files, 135 lines)
         HELP_WRITTEN (8 files, 750 lines)
         MENUS (19 files, 2018 lines)
         PHYLIP (0 files, 0 lines)
     GENOM (17 files, 5522 lines)
     GENOM_IMPORT (18 files, 2798 lines)
     GFX (2 files, 1079 lines)
     GL (1 files, 61 lines)
         glAW (10 files, 1498 lines)
         glpng (4 files, 716 lines)
     HEADERLIBS (7 files, 205 lines)
     HELP_SOURCE (16 files, 3795 lines)
         genhelp (6 files, 200 lines)
         oldhelp (345 files, 26331 lines)
             prompt (1 files, 31 lines)
             seer (0 files, 0 lines)
     ISLAND_HOPPING (12 files, 2104 lines)
     JAVALIB (0 files, 0 lines)
     MERGE (16 files, 5853 lines)
     MULTI_PROBE (21 files, 6008 lines)
     NALIGNER (26 files, 7913 lines)
     NAMES (4 files, 1535 lines)
     NAMES_COM (8 files, 297 lines)
     NIELS_F77 (0 files, 0 lines)
     NTREE (43 files, 18216 lines)
     ORS_CGI (0 files, 0 lines)
     ORS_COM (0 files, 0 lines)
     ORS_SERVER (0 files, 0 lines)
     PARSIMONY (19 files, 8889 lines)
     PERL2ARB (10 files, 1225 lines)
     PERLTOOLS (3 files, 1094 lines)
     PERL_SCRIPTS (0 files, 0 lines)
         ACI (1 files, 30 lines)
         ARBTOOLS (2 files, 625 lines)
             DOCUMENTED (0 files, 0 lines)
             IFTHELP (4 files, 254 lines)
             TESTS (2 files, 78 lines)
         BIOPERL (2 files, 119 lines)
         GENERAL (1 files, 99 lines)
         GENOME (3 files, 452 lines)
         IFTHELP (0 files, 0 lines)
         MACROS (1 files, 158 lines)
         MAUS (0 files, 0 lines)
         SAI (2 files, 159 lines)
         SPECIES (3 files, 329 lines)
         lib (1 files, 80 lines)
         test (5 files, 212 lines)
     PGT (0 files, 0 lines)
         xslt (0 files, 0 lines)
     PHYLO (11 files, 2152 lines)
     PRIMER_DESIGN (20 files, 3032 lines)
     PROBE (25 files, 10725 lines)
     PROBE_COM (8 files, 446 lines)
     PROBE_DESIGN (11 files, 6535 lines)
     PROBE_SERVER (0 files, 0 lines)
         PROBE_GROUP (0 files, 0 lines)
         PROBE_GROUP_DESIGN (0 files, 0 lines)
         TREE_MERGE (0 files, 0 lines)
         WORKER (0 files, 0 lines)
     PROBE_SET (32 files, 6865 lines)
     PROBE_WEB (0 files, 0 lines)
         CLIENT (0 files, 0 lines)
         SERVER (0 files, 0 lines)
     READSEQ (9 files, 5275 lines)
     RNA3D (20 files, 4641 lines)
         Attic (0 files, 0 lines)
             OPENGL (0 files, 0 lines)
             data (0 files, 0 lines)
             images (0 files, 0 lines)
     RNACMA (8 files, 1574 lines)
     SECEDIT (28 files, 8544 lines)
     SEER (0 files, 0 lines)
     SEQ_QUALITY (12 files, 2459 lines)
     SERVERCNTRL (4 files, 559 lines)
     SH (33 files, 2378 lines)
     SL (2 files, 95 lines)
         ALILINK (7 files, 2363 lines)
         ALIVIEW (4 files, 177 lines)
         AP_TREE (8 files, 2375 lines)
         ARB_TREE (4 files, 569 lines)
         AW_HELIX (4 files, 363 lines)
         AW_NAME (5 files, 1058 lines)
         CB (7 files, 1126 lines)
         CONSENSUS (3 files, 1730 lines)
         DB_QUERY (5 files, 3010 lines)
         DB_SCANNER (4 files, 791 lines)
         DB_UI (5 files, 2062 lines)
         FAST_ALIGNER (8 files, 5877 lines)
         FILE_BUFFER (0 files, 0 lines)
         FILTER (6 files, 901 lines)
         FILTSEQEXP (3 files, 649 lines)
         GROUP_SEARCH (3 files, 4170 lines)
         GUI_ALIVIEW (9 files, 1356 lines)
         HELIX (6 files, 811 lines)
         INSDEL (2 files, 2366 lines)
         ITEMS (9 files, 1599 lines)
         ITEM_SHADER (5 files, 2392 lines)
         LOCATION (4 files, 611 lines)
         MACROS (10 files, 1867 lines)
         MATRIX (4 files, 336 lines)
         NDS (3 files, 1085 lines)
         NEIGHBOURJOIN (5 files, 557 lines)
         PRONUC (8 files, 2771 lines)
         PTCLEAN (4 files, 256 lines)
         PVP (2 files, 484 lines)
         QUERY (3 files, 666 lines)
         REFENTRIES (4 files, 526 lines)
         REGEXPR (4 files, 370 lines)
         ROOTED_TREE (0 files, 0 lines)
         SAICALC (3 files, 2444 lines)
         SEQIO (5 files, 1218 lines)
         SEQUENCE (10 files, 1757 lines)
         TRANSLATE (4 files, 346 lines)
         TREEDISP (10 files, 7359 lines)
         TREE_ADMIN (4 files, 345 lines)
         TREE_READ (5 files, 1235 lines)
         TREE_WRITE (4 files, 576 lines)
         XFERGUI (2 files, 1293 lines)
         XFERSET (3 files, 2157 lines)
     SOURCE_TOOLS (63 files, 10425 lines)
         COMPILE_COMPAT (4 files, 129 lines)
         docs (1 files, 79 lines)
         release (2 files, 384 lines)
     STAT (9 files, 2162 lines)
     TEMPLATES (44 files, 8118 lines)
     TEST (0 files, 0 lines)
     TESTAWT (0 files, 0 lines)
     TESTVECTORFONT (0 files, 0 lines)
     TOOLS (28 files, 12322 lines)
     TREEGEN (17 files, 1459 lines)
     TREE_COMPRESS (0 files, 0 lines)
     TRS (0 files, 0 lines)
     UNIT_TESTER (25 files, 6163 lines)
         flags (1 files, 2 lines)
         run (41 files, 18673 lines)
             consense (0 files, 0 lines)
                 1 (7 files, 475 lines)
                 2 (5 files, 894 lines)
                 3 (4 files, 1543 lines)
                 4 (3 files, 146 lines)
                 6 (1 files, 49 lines)
             diff (4 files, 72 lines)
             display (25 files, 17274 lines)
             distance (3 files, 69 lines)
             fakehome (0 files, 0 lines)
             general (6 files, 90 lines)
             help (3 files, 933 lines)
             homefake (0 files, 0 lines)
                 .arb_prop (1 files, 1 lines)
             impexp (39 files, 4469 lines)
             pars (22 files, 828 lines)
             pvp (4 files, 63 lines)
             tools (23 files, 475 lines)
             trees (1 files, 27 lines)
             xsub (4 files, 511 lines)
         sockets (0 files, 0 lines)
         valgrind (2 files, 179 lines)
     WETC (3 files, 114 lines)
     WINDOW (75 files, 26106 lines)
     XML (4 files, 500 lines)
     XML_IMPORT (0 files, 0 lines)
         IMP_TREE (0 files, 0 lines)
     bin (2 files, 216 lines)
     doc (1 files, 85 lines)
     etc (6 files, 5366 lines)
     fig2dev (0 files, 0 lines)
         dev (0 files, 0 lines)
     lib (8 files, 12081 lines)
         BUGS (2 files, 69 lines)
         addlibs (1 files, 14 lines)
         arb_default (7 files, 694 lines)
         desktop (4 files, 21 lines)
         dtd (2 files, 92 lines)
         export (14 files, 130 lines)
         gde (2 files, 25 lines)
         icons (0 files, 0 lines)
         import (9 files, 680 lines)
             nonformats (7 files, 783 lines)
         inputMasks (9 files, 343 lines)
         macros (4 files, 126 lines)
             .checks (3 files, 675 lines)
             ARB (0 files, 0 lines)
                 SEQ_DATA (1 files, 111 lines)
         motifHack (3 files, 322 lines)
             pixmaps (0 files, 0 lines)
         nas (3 files, 18 lines)
         pictures (101 files, 3690 lines)
             PARS (0 files, 0 lines)
             awt (19 files, 599 lines)
             awtc (2 files, 46 lines)
             consensus (2 files, 368 lines)
             cpro (2 files, 72 lines)
             demo (0 files, 0 lines)
             edit4 (16 files, 819 lines)
             etc (0 files, 0 lines)
             faligner (3 files, 139 lines)
             findcorr (0 files, 0 lines)
             merge (12 files, 473 lines)
             pars (3 files, 184 lines)
             phylo (3 files, 67 lines)
             query (5 files, 131 lines)
             seer (0 files, 0 lines)
             unused (0 files, 0 lines)
                 demo (0 files, 0 lines)
                 findcorr (0 files, 0 lines)
             window (1 files, 24 lines)
         pixmaps (84 files, 3509 lines)
             edit (20 files, 602 lines)
                 unused (0 files, 0 lines)
             icons (7 files, 273 lines)
                 unused (0 files, 0 lines)
             merge (1 files, 48 lines)
             pgt (0 files, 0 lines)
             print (6 files, 239 lines)
                 unused (0 files, 0 lines)
             seer (0 files, 0 lines)
             unused (0 files, 0 lines)
         protein_2nd_structure (0 files, 0 lines)
         rna3d (5 files, 4617 lines)
             images (17 files, 0 lines)
         sellists (9 files, 98 lines)
         submit (3 files, 1061 lines)
     ptpan (0 files, 0 lines)
     util (18 files, 1538 lines)