Development Statistics for /trunk

Lines of Code

Top 10 Authors

Tag Cloud of Words in Commit Log Messages

about adds alignment allow always assertion avoid awar before branches broken build button call callback cause change check cleanup code color command comment config create data debug default define delete depend display empty error export fail field file fixed fixes format function generate global group help include instead interface line link list longer macro made make makefile menu merge message miss mode move name only parameter position print probe prototype reintegrate remove rename replace result return save search selection sequence server several size species target test tree trunk type unit unused update uses using value variable version warn window wrong

Directories

[root] (16 files, 6435 lines)
     AISC (15 files, 3891 lines)
     AISC_COM (1 files, 16 lines)
         AISC (8 files, 2080 lines)
         C (15 files, 2740 lines)
     AISC_MKPTPS (3 files, 1871 lines)
     ALEIO (0 files, 0 lines)
     ALIV3 (0 files, 0 lines)
     ARBDB (85 files, 44758 lines)
         EXAMPLES (0 files, 0 lines)
     ARBDB2 (0 files, 0 lines)
     ARBDBPP (0 files, 0 lines)
     ARBDBS (0 files, 0 lines)
     ARBDB_COMPRESS (0 files, 0 lines)
     ARB_GDE (16 files, 4031 lines)
     AWDEMO (0 files, 0 lines)
     AWT (32 files, 12319 lines)
     AWTC (6 files, 1048 lines)
     AWTI (10 files, 2871 lines)
     BERGEY (0 files, 0 lines)
     BINDEP (36 files, 167 lines)
     BINDINGS (2 files, 267 lines)
         PERL (4 files, 1028 lines)
         PYTHON (4 files, 147 lines)
     BUGEX (1 files, 208 lines)
     CAT (0 files, 0 lines)
     CHIP (0 files, 0 lines)
     CONSENSUS_TREE (13 files, 2235 lines)
     CONVERTALN (36 files, 6584 lines)
     CORE (46 files, 8552 lines)
     DBSERVER (3 files, 561 lines)
     DIST (20 files, 7371 lines)
     DUMMYINC (0 files, 0 lines)
     EDIT (0 files, 0 lines)
     EDIT4 (52 files, 28713 lines)
     EISPACK (7 files, 29479 lines)
     GDE (2 files, 145 lines)
         AxML (5 files, 5977 lines)
         CLUSTAL (13 files, 4954 lines)
         CLUSTALW (33 files, 21348 lines)
         CORE (0 files, 0 lines)
         FASTDNAML (7 files, 6447 lines)
         FASTTREE (2 files, 10123 lines)
         HGL_SRC (0 files, 0 lines)
         LOOPTOOL (0 files, 0 lines)
         MAFFT (1 files, 55 lines)
             mafft-7.053-without-extensions (0 files, 0 lines)
                 core (0 files, 0 lines)
                 scripts (0 files, 0 lines)
             mafft-7.055-with-extensions (3 files, 307 lines)
                 core (89 files, 75597 lines)
                 extensions (2 files, 71 lines)
                     mxscarna_src (21 files, 6911 lines)
                         probconsRNA (20 files, 7594 lines)
                         vienna (6 files, 11842 lines)
         MOLPHY (0 files, 0 lines)
             doc (0 files, 0 lines)
             utl (0 files, 0 lines)
         MUSCLE (1 files, 38 lines)
             src (190 files, 34747 lines)
                 unused (3 files, 548 lines)
         MrBAYES (1 files, 45 lines)
             mrbayes_3.2.1 (30 files, 114638 lines)
         PHYLIP (66 files, 71352 lines)
             doc (42 files, 21478 lines)
         PHYML (22 files, 15180 lines)
         PHYML20130708 (1 files, 57 lines)
             phyml (17 files, 22758 lines)
                 bin (0 files, 0 lines)
                 doc (17 files, 24532 lines)
                 examples (5 files, 1255 lines)
                     lg4x (5 files, 142 lines)
                 src (68 files, 78797 lines)
         PROBCONS (1 files, 23 lines)
             probcons (16 files, 6319 lines)
         RAxML (31 files, 72525 lines)
         RAxML8 (4 files, 695 lines)
         SATIVA (4 files, 490 lines)
             sativa (3 files, 1494 lines)
                 epac (8 files, 2380 lines)
                     ete2 (1 files, 185 lines)
         SUPPORT (10 files, 2584 lines)
         TREEPUZZLE (6 files, 854 lines)
             data (0 files, 0 lines)
             doc (3 files, 1653 lines)
             src (18 files, 17676 lines)
     GDEHELP (9 files, 771 lines)
         DATA_FILES (0 files, 0 lines)
         FASTA (0 files, 0 lines)
             GENBANK (1 files, 1500 lines)
             MATRIX (9 files, 258 lines)
         HELP_PLAIN (3 files, 135 lines)
         HELP_WRITTEN (8 files, 750 lines)
         MENUS (19 files, 2018 lines)
         PHYLIP (0 files, 0 lines)
     GENOM (17 files, 5520 lines)
     GENOM_IMPORT (18 files, 2818 lines)
     GFX (2 files, 1079 lines)
     GL (1 files, 61 lines)
         glAW (10 files, 1498 lines)
         glpng (4 files, 715 lines)
     HEADERLIBS (6 files, 204 lines)
     HELP_SOURCE (15 files, 3789 lines)
         genhelp (5 files, 199 lines)
         oldhelp (343 files, 25879 lines)
             prompt (1 files, 31 lines)
             seer (0 files, 0 lines)
     ISLAND_HOPPING (12 files, 2104 lines)
     JAVALIB (0 files, 0 lines)
     MERGE (16 files, 5517 lines)
     MULTI_PROBE (21 files, 6003 lines)
     NALIGNER (26 files, 7913 lines)
     NAMES (4 files, 1535 lines)
     NAMES_COM (7 files, 288 lines)
     NIELS_F77 (0 files, 0 lines)
     NTREE (43 files, 18070 lines)
     ORS_CGI (0 files, 0 lines)
     ORS_COM (0 files, 0 lines)
     ORS_SERVER (0 files, 0 lines)
     PARSIMONY (19 files, 8885 lines)
     PERL2ARB (9 files, 1213 lines)
     PERLTOOLS (3 files, 1092 lines)
     PERL_SCRIPTS (0 files, 0 lines)
         ACI (1 files, 30 lines)
         ARBTOOLS (2 files, 625 lines)
             DOCUMENTED (0 files, 0 lines)
             IFTHELP (4 files, 254 lines)
             TESTS (1 files, 3 lines)
         BIOPERL (2 files, 119 lines)
         GENERAL (1 files, 99 lines)
         GENOME (3 files, 452 lines)
         IFTHELP (0 files, 0 lines)
         MACROS (1 files, 158 lines)
         MAUS (0 files, 0 lines)
         SAI (2 files, 158 lines)
         SPECIES (3 files, 329 lines)
         lib (1 files, 80 lines)
         test (5 files, 212 lines)
     PGT (0 files, 0 lines)
         xslt (0 files, 0 lines)
     PHYLO (11 files, 2150 lines)
     PRIMER_DESIGN (20 files, 3030 lines)
     PROBE (25 files, 10726 lines)
     PROBE_COM (7 files, 437 lines)
     PROBE_DESIGN (11 files, 6533 lines)
     PROBE_SERVER (0 files, 0 lines)
         PROBE_GROUP (0 files, 0 lines)
         PROBE_GROUP_DESIGN (0 files, 0 lines)
         TREE_MERGE (0 files, 0 lines)
         WORKER (0 files, 0 lines)
     PROBE_SET (31 files, 6862 lines)
     PROBE_WEB (0 files, 0 lines)
         CLIENT (0 files, 0 lines)
         SERVER (0 files, 0 lines)
     READSEQ (9 files, 5275 lines)
     RNA3D (20 files, 4740 lines)
         Attic (0 files, 0 lines)
             OPENGL (0 files, 0 lines)
             data (0 files, 0 lines)
             images (0 files, 0 lines)
     RNACMA (10 files, 1466 lines)
     SECEDIT (28 files, 8537 lines)
     SEER (0 files, 0 lines)
     SEQ_QUALITY (12 files, 2457 lines)
     SERVERCNTRL (4 files, 559 lines)
     SH (33 files, 2357 lines)
     SL (2 files, 95 lines)
         ALILINK (6 files, 2328 lines)
         ALIVIEW (4 files, 177 lines)
         AP_TREE (8 files, 2369 lines)
         ARB_TREE (4 files, 559 lines)
         AW_HELIX (4 files, 361 lines)
         AW_NAME (5 files, 1058 lines)
         CB (7 files, 1126 lines)
         CONSENSUS (3 files, 1672 lines)
         DB_QUERY (5 files, 2997 lines)
         DB_SCANNER (4 files, 736 lines)
         DB_UI (5 files, 2067 lines)
         FAST_ALIGNER (8 files, 5873 lines)
         FILE_BUFFER (0 files, 0 lines)
         FILTER (6 files, 901 lines)
         FILTSEQEXP (3 files, 649 lines)
         GROUP_SEARCH (3 files, 4170 lines)
         GUI_ALIVIEW (9 files, 1342 lines)
         HELIX (6 files, 807 lines)
         INSDEL (2 files, 2362 lines)
         ITEMS (9 files, 1572 lines)
         ITEM_SHADER (5 files, 2380 lines)
         LOCATION (4 files, 611 lines)
         MACROS (10 files, 1867 lines)
         MATRIX (4 files, 336 lines)
         NDS (3 files, 1083 lines)
         NEIGHBOURJOIN (5 files, 557 lines)
         PRONUC (8 files, 2771 lines)
         PTCLEAN (4 files, 264 lines)
         PVP (2 files, 484 lines)
         QUERY (3 files, 666 lines)
         REFENTRIES (4 files, 527 lines)
         REGEXPR (4 files, 370 lines)
         ROOTED_TREE (0 files, 0 lines)
         SEQIO (5 files, 1125 lines)
         SEQUENCE (10 files, 1757 lines)
         TRANSLATE (4 files, 346 lines)
         TREEDISP (10 files, 7351 lines)
         TREE_ADMIN (4 files, 345 lines)
         TREE_READ (5 files, 1235 lines)
         TREE_WRITE (4 files, 576 lines)
     SOURCE_TOOLS (61 files, 10000 lines)
         COMPILE_COMPAT (3 files, 128 lines)
         docs (1 files, 79 lines)
         release (2 files, 384 lines)
     STAT (9 files, 2160 lines)
     TEMPLATES (42 files, 7955 lines)
     TEST (0 files, 0 lines)
     TESTAWT (0 files, 0 lines)
     TESTVECTORFONT (0 files, 0 lines)
     TOOLS (27 files, 11964 lines)
     TREEGEN (17 files, 1459 lines)
     TREE_COMPRESS (0 files, 0 lines)
     TRS (0 files, 0 lines)
     UNIT_TESTER (21 files, 5717 lines)
         flags (1 files, 2 lines)
         run (33 files, 13967 lines)
             consense (0 files, 0 lines)
                 1 (7 files, 475 lines)
                 2 (5 files, 894 lines)
                 3 (4 files, 1543 lines)
                 4 (3 files, 146 lines)
                 6 (1 files, 49 lines)
             diff (4 files, 72 lines)
             display (25 files, 17274 lines)
             distance (3 files, 69 lines)
             fakehome (0 files, 0 lines)
             general (6 files, 90 lines)
             help (3 files, 933 lines)
             impexp (38 files, 4437 lines)
             pars (22 files, 828 lines)
             tools (22 files, 475 lines)
             trees (1 files, 27 lines)
             xsub (4 files, 511 lines)
         sockets (0 files, 0 lines)
         valgrind (2 files, 179 lines)
     WETC (3 files, 114 lines)
     WINDOW (75 files, 26013 lines)
     XML (4 files, 500 lines)
     XML_IMPORT (2 files, 46 lines)
         IMP_TREE (9 files, 592 lines)
     bin (1 files, 61 lines)
     doc (1 files, 85 lines)
     etc (6 files, 5366 lines)
     fig2dev (0 files, 0 lines)
         dev (0 files, 0 lines)
     lib (7 files, 12068 lines)
         BUGS (2 files, 69 lines)
         addlibs (1 files, 14 lines)
         arb_default (7 files, 694 lines)
         desktop (4 files, 21 lines)
         dtd (2 files, 92 lines)
         export (14 files, 130 lines)
         gde (1 files, 22 lines)
         icons (0 files, 0 lines)
         import (9 files, 680 lines)
             nonformats (7 files, 783 lines)
         inputMasks (8 files, 342 lines)
         macros (4 files, 126 lines)
             .checks (3 files, 675 lines)
             ARB (0 files, 0 lines)
                 SEQ_DATA (1 files, 111 lines)
         motifHack (2 files, 321 lines)
             pixmaps (0 files, 0 lines)
         nas (2 files, 16 lines)
         pictures (94 files, 5171 lines)
             PARS (0 files, 0 lines)
             awt (19 files, 589 lines)
             awtc (2 files, 37 lines)
             consensus (2 files, 880 lines)
             cpro (2 files, 76 lines)
             demo (0 files, 0 lines)
             edit4 (16 files, 1377 lines)
             etc (0 files, 0 lines)
             faligner (3 files, 149 lines)
             findcorr (0 files, 0 lines)
             merge (12 files, 488 lines)
             pars (3 files, 177 lines)
             phylo (3 files, 60 lines)
             query (5 files, 133 lines)
             seer (0 files, 0 lines)
             unused (0 files, 0 lines)
                 demo (0 files, 0 lines)
                 findcorr (0 files, 0 lines)
             window (1 files, 30 lines)
         pixmaps (84 files, 3509 lines)
             edit (20 files, 602 lines)
                 unused (0 files, 0 lines)
             icons (7 files, 273 lines)
                 unused (0 files, 0 lines)
             merge (1 files, 48 lines)
             pgt (0 files, 0 lines)
             print (6 files, 239 lines)
                 unused (0 files, 0 lines)
             seer (0 files, 0 lines)
             unused (0 files, 0 lines)
         protein_2nd_structure (0 files, 0 lines)
         rna3d (5 files, 4617 lines)
             images (22 files, 0 lines)
         sellists (9 files, 98 lines)
         submit (3 files, 1061 lines)
     ptpan (4 files, 57 lines)
     util (18 files, 1529 lines)