Development Statistics for /trunk

Lines of Code

Top 10 Authors

Tag Cloud of Words in Commit Log Messages

about adds alignment allow always assertion avoid awar before branches broken build button call callback cause change check cleanup code color command comment config create data debug default define delete depend display empty error export fail field file fixed fixes format function generate global group help include instead interface line link list longer macro made make makefile menu merge message miss mode move name only parameter position print probe prototype reintegrate remove rename replace result return save search selection sequence server several size species target test tree trunk type unit unused update uses using value variable version warn window wrong

Directories

[root] (17 files, 7427 lines)
     AISC (16 files, 3904 lines)
     AISC_COM (1 files, 16 lines)
         AISC (8 files, 2074 lines)
         C (15 files, 2740 lines)
     AISC_MKPTPS (4 files, 1872 lines)
     ALEIO (0 files, 0 lines)
     ALIV3 (0 files, 0 lines)
     ARBDB (85 files, 45028 lines)
         EXAMPLES (0 files, 0 lines)
     ARBDB2 (0 files, 0 lines)
     ARBDBPP (0 files, 0 lines)
     ARBDBS (0 files, 0 lines)
     ARBDB_COMPRESS (0 files, 0 lines)
     ARB_GDE (16 files, 4033 lines)
     AWDEMO (0 files, 0 lines)
     AWT (32 files, 12226 lines)
     AWTC (6 files, 1048 lines)
     AWTI (10 files, 2871 lines)
     BERGEY (0 files, 0 lines)
     BINDEP (36 files, 167 lines)
     BINDINGS (2 files, 267 lines)
         PERL (4 files, 1028 lines)
         PYTHON (4 files, 147 lines)
     BUGEX (1 files, 188 lines)
     CAT (0 files, 0 lines)
     CHIP (0 files, 0 lines)
     CONSENSUS_TREE (13 files, 2235 lines)
     CONVERTALN (36 files, 6595 lines)
     CORE (48 files, 9007 lines)
     DBSERVER (3 files, 561 lines)
     DIST (20 files, 7373 lines)
     DUMMYINC (0 files, 0 lines)
     EDIT (0 files, 0 lines)
     EDIT4 (52 files, 28729 lines)
     EISPACK (7 files, 29479 lines)
     GDE (2 files, 145 lines)
         AxML (5 files, 5977 lines)
         CLUSTAL (13 files, 4954 lines)
         CLUSTALW (33 files, 21348 lines)
         CORE (0 files, 0 lines)
         FASTDNAML (7 files, 6447 lines)
         FASTTREE (3 files, 10124 lines)
         HGL_SRC (0 files, 0 lines)
         LOOPTOOL (0 files, 0 lines)
         MAFFT (1 files, 55 lines)
             mafft-7.053-without-extensions (0 files, 0 lines)
                 core (0 files, 0 lines)
                 scripts (0 files, 0 lines)
             mafft-7.055-with-extensions (4 files, 309 lines)
                 core (90 files, 75630 lines)
                 extensions (3 files, 72 lines)
                     mxscarna_src (21 files, 6911 lines)
                         probconsRNA (20 files, 7594 lines)
                         vienna (6 files, 11842 lines)
         MOLPHY (0 files, 0 lines)
             doc (0 files, 0 lines)
             utl (0 files, 0 lines)
         MUSCLE (1 files, 38 lines)
             src (190 files, 34747 lines)
                 unused (3 files, 548 lines)
         MrBAYES (1 files, 45 lines)
             mrbayes_3.2.1 (31 files, 114639 lines)
         PHYLIP (66 files, 71352 lines)
             doc (42 files, 21478 lines)
         PHYML (22 files, 15180 lines)
         PHYML20130708 (2 files, 64 lines)
             phyml (18 files, 22761 lines)
                 bin (0 files, 0 lines)
                 doc (17 files, 24532 lines)
                 examples (5 files, 1255 lines)
                     lg4x (5 files, 142 lines)
                 src (68 files, 78797 lines)
         PROBCONS (1 files, 23 lines)
             probcons (17 files, 6323 lines)
         RAxML (31 files, 72525 lines)
         RAxML8 (5 files, 698 lines)
         SATIVA (5 files, 493 lines)
             sativa (3 files, 1494 lines)
                 epac (8 files, 2380 lines)
                     ete2 (1 files, 185 lines)
         SUPPORT (10 files, 2584 lines)
         TREEPUZZLE (6 files, 854 lines)
             data (0 files, 0 lines)
             doc (3 files, 1653 lines)
             src (18 files, 17676 lines)
     GDEHELP (10 files, 774 lines)
         DATA_FILES (0 files, 0 lines)
         FASTA (0 files, 0 lines)
             GENBANK (1 files, 1500 lines)
             MATRIX (9 files, 258 lines)
         HELP_PLAIN (3 files, 135 lines)
         HELP_WRITTEN (8 files, 750 lines)
         MENUS (19 files, 2018 lines)
         PHYLIP (0 files, 0 lines)
     GENOM (17 files, 5520 lines)
     GENOM_IMPORT (18 files, 2818 lines)
     GFX (2 files, 1079 lines)
     GL (1 files, 61 lines)
         glAW (10 files, 1498 lines)
         glpng (4 files, 715 lines)
     HEADERLIBS (7 files, 205 lines)
     HELP_SOURCE (16 files, 3795 lines)
         genhelp (6 files, 200 lines)
         oldhelp (343 files, 25879 lines)
             prompt (1 files, 31 lines)
             seer (0 files, 0 lines)
     ISLAND_HOPPING (12 files, 2104 lines)
     JAVALIB (0 files, 0 lines)
     MERGE (16 files, 5519 lines)
     MULTI_PROBE (21 files, 6004 lines)
     NALIGNER (26 files, 7913 lines)
     NAMES (4 files, 1535 lines)
     NAMES_COM (8 files, 297 lines)
     NIELS_F77 (0 files, 0 lines)
     NTREE (43 files, 18077 lines)
     ORS_CGI (0 files, 0 lines)
     ORS_COM (0 files, 0 lines)
     ORS_SERVER (0 files, 0 lines)
     PARSIMONY (19 files, 8887 lines)
     PERL2ARB (10 files, 1224 lines)
     PERLTOOLS (3 files, 1092 lines)
     PERL_SCRIPTS (0 files, 0 lines)
         ACI (1 files, 30 lines)
         ARBTOOLS (2 files, 625 lines)
             DOCUMENTED (0 files, 0 lines)
             IFTHELP (4 files, 254 lines)
             TESTS (1 files, 3 lines)
         BIOPERL (2 files, 119 lines)
         GENERAL (1 files, 99 lines)
         GENOME (3 files, 452 lines)
         IFTHELP (0 files, 0 lines)
         MACROS (1 files, 158 lines)
         MAUS (0 files, 0 lines)
         SAI (2 files, 159 lines)
         SPECIES (3 files, 329 lines)
         lib (1 files, 80 lines)
         test (5 files, 212 lines)
     PGT (0 files, 0 lines)
         xslt (0 files, 0 lines)
     PHYLO (11 files, 2152 lines)
     PRIMER_DESIGN (20 files, 3032 lines)
     PROBE (25 files, 10725 lines)
     PROBE_COM (8 files, 446 lines)
     PROBE_DESIGN (11 files, 6535 lines)
     PROBE_SERVER (0 files, 0 lines)
         PROBE_GROUP (0 files, 0 lines)
         PROBE_GROUP_DESIGN (0 files, 0 lines)
         TREE_MERGE (0 files, 0 lines)
         WORKER (0 files, 0 lines)
     PROBE_SET (32 files, 6863 lines)
     PROBE_WEB (0 files, 0 lines)
         CLIENT (0 files, 0 lines)
         SERVER (0 files, 0 lines)
     READSEQ (9 files, 5275 lines)
     RNA3D (20 files, 4636 lines)
         Attic (0 files, 0 lines)
             OPENGL (0 files, 0 lines)
             data (0 files, 0 lines)
             images (0 files, 0 lines)
     RNACMA (10 files, 1466 lines)
     SECEDIT (28 files, 8539 lines)
     SEER (0 files, 0 lines)
     SEQ_QUALITY (12 files, 2459 lines)
     SERVERCNTRL (4 files, 559 lines)
     SH (33 files, 2362 lines)
     SL (2 files, 95 lines)
         ALILINK (7 files, 2364 lines)
         ALIVIEW (4 files, 177 lines)
         AP_TREE (8 files, 2371 lines)
         ARB_TREE (4 files, 569 lines)
         AW_HELIX (4 files, 363 lines)
         AW_NAME (5 files, 1058 lines)
         CB (7 files, 1126 lines)
         CONSENSUS (3 files, 1730 lines)
         DB_QUERY (5 files, 2998 lines)
         DB_SCANNER (4 files, 765 lines)
         DB_UI (5 files, 2069 lines)
         FAST_ALIGNER (8 files, 5875 lines)
         FILE_BUFFER (0 files, 0 lines)
         FILTER (6 files, 901 lines)
         FILTSEQEXP (3 files, 649 lines)
         GROUP_SEARCH (3 files, 4170 lines)
         GUI_ALIVIEW (9 files, 1342 lines)
         HELIX (6 files, 807 lines)
         INSDEL (2 files, 2365 lines)
         ITEMS (9 files, 1572 lines)
         ITEM_SHADER (5 files, 2381 lines)
         LOCATION (4 files, 611 lines)
         MACROS (10 files, 1867 lines)
         MATRIX (4 files, 336 lines)
         NDS (3 files, 1085 lines)
         NEIGHBOURJOIN (5 files, 557 lines)
         PRONUC (8 files, 2771 lines)
         PTCLEAN (4 files, 257 lines)
         PVP (2 files, 484 lines)
         QUERY (3 files, 666 lines)
         REFENTRIES (4 files, 526 lines)
         REGEXPR (4 files, 370 lines)
         ROOTED_TREE (0 files, 0 lines)
         SEQIO (5 files, 1125 lines)
         SEQUENCE (10 files, 1757 lines)
         TRANSLATE (4 files, 346 lines)
         TREEDISP (10 files, 7355 lines)
         TREE_ADMIN (4 files, 345 lines)
         TREE_READ (5 files, 1235 lines)
         TREE_WRITE (4 files, 576 lines)
     SOURCE_TOOLS (62 files, 10107 lines)
         COMPILE_COMPAT (4 files, 129 lines)
         docs (1 files, 79 lines)
         release (2 files, 384 lines)
     STAT (9 files, 2162 lines)
     TEMPLATES (44 files, 8070 lines)
     TEST (0 files, 0 lines)
     TESTAWT (0 files, 0 lines)
     TESTVECTORFONT (0 files, 0 lines)
     TOOLS (27 files, 11964 lines)
     TREEGEN (17 files, 1459 lines)
     TREE_COMPRESS (0 files, 0 lines)
     TRS (0 files, 0 lines)
     UNIT_TESTER (22 files, 5804 lines)
         flags (1 files, 2 lines)
         run (36 files, 14203 lines)
             consense (0 files, 0 lines)
                 1 (7 files, 475 lines)
                 2 (5 files, 894 lines)
                 3 (4 files, 1543 lines)
                 4 (3 files, 146 lines)
                 6 (1 files, 49 lines)
             diff (4 files, 72 lines)
             display (25 files, 17274 lines)
             distance (3 files, 69 lines)
             fakehome (0 files, 0 lines)
             general (6 files, 90 lines)
             help (3 files, 933 lines)
             homefake (0 files, 0 lines)
                 .arb_prop (1 files, 1 lines)
             impexp (38 files, 4437 lines)
             pars (22 files, 828 lines)
             tools (22 files, 475 lines)
             trees (1 files, 27 lines)
             xsub (4 files, 511 lines)
         sockets (0 files, 0 lines)
         valgrind (2 files, 179 lines)
     WETC (3 files, 114 lines)
     WINDOW (75 files, 26015 lines)
     XML (4 files, 500 lines)
     XML_IMPORT (2 files, 46 lines)
         IMP_TREE (9 files, 592 lines)
     bin (2 files, 211 lines)
     doc (1 files, 85 lines)
     etc (6 files, 5366 lines)
     fig2dev (0 files, 0 lines)
         dev (0 files, 0 lines)
     lib (8 files, 12081 lines)
         BUGS (2 files, 69 lines)
         addlibs (1 files, 14 lines)
         arb_default (7 files, 694 lines)
         desktop (4 files, 21 lines)
         dtd (2 files, 92 lines)
         export (14 files, 130 lines)
         gde (2 files, 25 lines)
         icons (0 files, 0 lines)
         import (9 files, 680 lines)
             nonformats (7 files, 783 lines)
         inputMasks (9 files, 343 lines)
         macros (4 files, 126 lines)
             .checks (3 files, 675 lines)
             ARB (0 files, 0 lines)
                 SEQ_DATA (1 files, 111 lines)
         motifHack (3 files, 322 lines)
             pixmaps (0 files, 0 lines)
         nas (3 files, 17 lines)
         pictures (94 files, 5171 lines)
             PARS (0 files, 0 lines)
             awt (19 files, 589 lines)
             awtc (2 files, 37 lines)
             consensus (2 files, 880 lines)
             cpro (2 files, 76 lines)
             demo (0 files, 0 lines)
             edit4 (16 files, 1377 lines)
             etc (0 files, 0 lines)
             faligner (3 files, 149 lines)
             findcorr (0 files, 0 lines)
             merge (12 files, 488 lines)
             pars (3 files, 177 lines)
             phylo (3 files, 60 lines)
             query (5 files, 133 lines)
             seer (0 files, 0 lines)
             unused (0 files, 0 lines)
                 demo (0 files, 0 lines)
                 findcorr (0 files, 0 lines)
             window (1 files, 30 lines)
         pixmaps (84 files, 3509 lines)
             edit (20 files, 602 lines)
                 unused (0 files, 0 lines)
             icons (7 files, 273 lines)
                 unused (0 files, 0 lines)
             merge (1 files, 48 lines)
             pgt (0 files, 0 lines)
             print (6 files, 239 lines)
                 unused (0 files, 0 lines)
             seer (0 files, 0 lines)
             unused (0 files, 0 lines)
         protein_2nd_structure (0 files, 0 lines)
         rna3d (5 files, 4617 lines)
             images (22 files, 0 lines)
         sellists (9 files, 98 lines)
         submit (3 files, 1061 lines)
     ptpan (4 files, 57 lines)
     util (18 files, 1533 lines)