Development Statistics for /trunk

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Tag Cloud of Words in Commit Log Messages

about adds alignment allow always assertion avoid awar before branches broken build button call callback change check cleanup code color command comment config create data debug default define delete depend display duplicate empty error export fail field file fixed fixes format function generate global group help include instead interface line link list longer macro made make makefile menu merge message miss mode move name only parameter position print probe prototype reintegrate remove rename replace result return save search selection sequence server several size species target test tree trunk type unit unused update uses using value variable version warn window wrong

Directories

[root] (17 files, 7640 lines)
     AISC (16 files, 3904 lines)
     AISC_COM (1 files, 16 lines)
         AISC (8 files, 2077 lines)
         C (15 files, 2740 lines)
     AISC_MKPTPS (4 files, 1872 lines)
     ALEIO (0 files, 0 lines)
     ALIV3 (0 files, 0 lines)
     ARBDB (85 files, 45536 lines)
         EXAMPLES (0 files, 0 lines)
     ARBDB2 (0 files, 0 lines)
     ARBDBPP (0 files, 0 lines)
     ARBDBS (0 files, 0 lines)
     ARBDB_COMPRESS (0 files, 0 lines)
     ARB_GDE (16 files, 4024 lines)
     AWDEMO (0 files, 0 lines)
     AWT (32 files, 12286 lines)
     AWTC (6 files, 1046 lines)
     AWTI (10 files, 3131 lines)
     BERGEY (0 files, 0 lines)
     BINDEP (37 files, 171 lines)
     BINDINGS (2 files, 267 lines)
         PERL (4 files, 1028 lines)
         PYTHON (4 files, 147 lines)
     BUGEX (1 files, 188 lines)
     CAT (0 files, 0 lines)
     CHIP (0 files, 0 lines)
     CONSENSUS_TREE (16 files, 3452 lines)
     CONVERTALN (36 files, 6593 lines)
     CORE (50 files, 9447 lines)
     DBSERVER (3 files, 562 lines)
     DIST (19 files, 7365 lines)
     DUMMYINC (0 files, 0 lines)
     EDIT (0 files, 0 lines)
     EDIT4 (51 files, 28730 lines)
     EISPACK (7 files, 29478 lines)
     GDE (2 files, 145 lines)
         AxML (5 files, 5977 lines)
         CLUSTAL (13 files, 4954 lines)
         CLUSTALW (33 files, 21348 lines)
         CORE (0 files, 0 lines)
         FASTDNAML (7 files, 6447 lines)
         FASTTREE (3 files, 10348 lines)
         HGL_SRC (0 files, 0 lines)
         LOOPTOOL (0 files, 0 lines)
         MAFFT (1 files, 55 lines)
             mafft-7.053-without-extensions (0 files, 0 lines)
                 core (0 files, 0 lines)
                 scripts (0 files, 0 lines)
             mafft-7.055-with-extensions (4 files, 309 lines)
                 core (90 files, 75630 lines)
                 extensions (3 files, 72 lines)
                     mxscarna_src (21 files, 6911 lines)
                         probconsRNA (20 files, 7594 lines)
                         vienna (6 files, 11842 lines)
         MOLPHY (0 files, 0 lines)
             doc (0 files, 0 lines)
             utl (0 files, 0 lines)
         MUSCLE (1 files, 38 lines)
             src (190 files, 34747 lines)
                 unused (3 files, 548 lines)
         MrBAYES (1 files, 45 lines)
             mrbayes_3.2.1 (31 files, 114639 lines)
         PHYLIP (66 files, 71352 lines)
             doc (42 files, 21478 lines)
         PHYML (22 files, 15180 lines)
         PHYML20130708 (2 files, 64 lines)
             phyml (18 files, 22761 lines)
                 bin (0 files, 0 lines)
                 doc (17 files, 24532 lines)
                 examples (5 files, 1255 lines)
                     lg4x (5 files, 142 lines)
                 src (68 files, 78797 lines)
         PROBCONS (1 files, 23 lines)
             probcons (17 files, 6323 lines)
         RAxML (31 files, 72525 lines)
         RAxML8 (5 files, 702 lines)
         SATIVA (5 files, 493 lines)
             sativa (3 files, 1494 lines)
                 epac (8 files, 2380 lines)
                     ete2 (1 files, 185 lines)
         SUPPORT (10 files, 2584 lines)
         TREEPUZZLE (6 files, 854 lines)
             data (0 files, 0 lines)
             doc (3 files, 1653 lines)
             src (18 files, 17676 lines)
     GDEHELP (11 files, 882 lines)
         DATA_FILES (0 files, 0 lines)
         FASTA (0 files, 0 lines)
             GENBANK (1 files, 1500 lines)
             MATRIX (9 files, 258 lines)
         HELP_PLAIN (3 files, 135 lines)
         HELP_WRITTEN (9 files, 778 lines)
         MENUS (21 files, 2091 lines)
         PHYLIP (0 files, 0 lines)
     GENOM (17 files, 5480 lines)
     GENOM_IMPORT (18 files, 2809 lines)
     GFX (2 files, 1079 lines)
     GL (1 files, 61 lines)
         glAW (10 files, 1498 lines)
         glpng (4 files, 716 lines)
     HEADERLIBS (7 files, 206 lines)
     HELP_SOURCE (16 files, 3820 lines)
         genhelp (6 files, 200 lines)
         oldhelp (0 files, 0 lines)
             prompt (0 files, 0 lines)
             seer (0 files, 0 lines)
     ISLAND_HOPPING (12 files, 2102 lines)
     JAVALIB (0 files, 0 lines)
     MERGE (16 files, 5899 lines)
     MULTI_PROBE (21 files, 5996 lines)
     NALIGNER (26 files, 7903 lines)
     NAMES (4 files, 1536 lines)
     NAMES_COM (8 files, 297 lines)
     NIELS_F77 (0 files, 0 lines)
     NTREE (44 files, 19202 lines)
     ORS_CGI (0 files, 0 lines)
     ORS_COM (0 files, 0 lines)
     ORS_SERVER (0 files, 0 lines)
     PARSIMONY (19 files, 8892 lines)
     PERL2ARB (11 files, 1485 lines)
     PERLTOOLS (3 files, 1095 lines)
     PERL_SCRIPTS (0 files, 0 lines)
         ACI (1 files, 30 lines)
         ARBTOOLS (2 files, 661 lines)
             DOCUMENTED (0 files, 0 lines)
             IFTHELP (4 files, 254 lines)
             TESTS (2 files, 78 lines)
         BIOPERL (2 files, 119 lines)
         GENERAL (1 files, 99 lines)
         GENOME (3 files, 452 lines)
         IFTHELP (0 files, 0 lines)
         MACROS (1 files, 158 lines)
         MAUS (0 files, 0 lines)
         SAI (2 files, 159 lines)
         SPECIES (4 files, 717 lines)
         lib (1 files, 80 lines)
         test (5 files, 212 lines)
     PGT (0 files, 0 lines)
         xslt (0 files, 0 lines)
     PHYLO (11 files, 2152 lines)
     PRIMER_DESIGN (19 files, 2980 lines)
     PROBE (25 files, 10725 lines)
     PROBE_COM (8 files, 446 lines)
     PROBE_DESIGN (11 files, 6543 lines)
     PROBE_SERVER (0 files, 0 lines)
         PROBE_GROUP (0 files, 0 lines)
         PROBE_GROUP_DESIGN (0 files, 0 lines)
         TREE_MERGE (0 files, 0 lines)
         WORKER (0 files, 0 lines)
     PROBE_SET (32 files, 6865 lines)
     PROBE_WEB (0 files, 0 lines)
         CLIENT (0 files, 0 lines)
         SERVER (0 files, 0 lines)
     READSEQ (9 files, 5275 lines)
     RNA3D (20 files, 4634 lines)
         Attic (0 files, 0 lines)
             OPENGL (0 files, 0 lines)
             data (0 files, 0 lines)
             images (0 files, 0 lines)
     RNACMA (8 files, 1574 lines)
     SECEDIT (28 files, 8524 lines)
     SEER (0 files, 0 lines)
     SEQ_QUALITY (12 files, 2454 lines)
     SERVERCNTRL (4 files, 560 lines)
     SH (33 files, 2380 lines)
     SL (2 files, 95 lines)
         ALILINK (7 files, 2367 lines)
         ALIVIEW (4 files, 172 lines)
         AP_TREE (8 files, 2370 lines)
         ARB_TREE (4 files, 564 lines)
         AW_HELIX (4 files, 358 lines)
         AW_NAME (5 files, 1061 lines)
         CB (7 files, 1126 lines)
         CONSENSUS (3 files, 1730 lines)
         DB_QUERY (5 files, 3015 lines)
         DB_SCANNER (4 files, 800 lines)
         DB_UI (5 files, 2061 lines)
         FAST_ALIGNER (8 files, 5857 lines)
         FILE_BUFFER (0 files, 0 lines)
         FILTER (6 files, 901 lines)
         FILTSEQEXP (3 files, 649 lines)
         GROUP_SEARCH (3 files, 4170 lines)
         GUI_ALIVIEW (9 files, 1346 lines)
         HELIX (6 files, 806 lines)
         INSDEL (2 files, 2366 lines)
         ITEMS (10 files, 1731 lines)
         ITEM_SHADER (5 files, 2390 lines)
         LOCATION (4 files, 611 lines)
         MACROS (10 files, 1867 lines)
         MATRIX (4 files, 317 lines)
         NDS (3 files, 1138 lines)
         NEIGHBOURJOIN (5 files, 562 lines)
         PRONUC (8 files, 2762 lines)
         PTCLEAN (4 files, 256 lines)
         PVP (2 files, 484 lines)
         QUERY (3 files, 666 lines)
         REFENTRIES (4 files, 526 lines)
         REGEXPR (4 files, 365 lines)
         ROOTED_TREE (0 files, 0 lines)
         SAICALC (3 files, 2444 lines)
         SEQIO (5 files, 1210 lines)
         SEQUENCE (10 files, 1751 lines)
         TRANSLATE (4 files, 339 lines)
         TREEDISP (10 files, 7395 lines)
         TREE_ADMIN (4 files, 345 lines)
         TREE_READ (5 files, 1230 lines)
         TREE_WRITE (5 files, 579 lines)
         XFERGUI (2 files, 1293 lines)
         XFERSET (3 files, 2157 lines)
     SOURCE_TOOLS (63 files, 10466 lines)
         COMPILE_COMPAT (4 files, 129 lines)
         docs (1 files, 79 lines)
         refactor (2 files, 32 lines)
         release (2 files, 407 lines)
     STAT (9 files, 2153 lines)
     TEMPLATES (46 files, 8290 lines)
     TEST (0 files, 0 lines)
     TESTAWT (0 files, 0 lines)
     TESTVECTORFONT (0 files, 0 lines)
     TOOLS (28 files, 12337 lines)
     TREEGEN (17 files, 1454 lines)
     TREE_COMPRESS (0 files, 0 lines)
     TRS (0 files, 0 lines)
     UNIT_TESTER (24 files, 6083 lines)
         flags (1 files, 2 lines)
         run (41 files, 18673 lines)
             consense (0 files, 0 lines)
                 1 (7 files, 475 lines)
                 2 (5 files, 894 lines)
                 3 (4 files, 1543 lines)
                 4 (3 files, 146 lines)
                 6 (1 files, 49 lines)
             diff (4 files, 72 lines)
             display (25 files, 17247 lines)
             distance (3 files, 69 lines)
             fakehome (0 files, 0 lines)
             general (6 files, 90 lines)
             help (3 files, 933 lines)
             homefake (0 files, 0 lines)
                 .arb_prop (1 files, 1 lines)
             impexp (39 files, 4469 lines)
             pars (22 files, 828 lines)
             pvp (4 files, 63 lines)
             tools (23 files, 475 lines)
             trees (1 files, 27 lines)
             xsub (4 files, 511 lines)
         sockets (0 files, 0 lines)
         valgrind (2 files, 179 lines)
     WETC (3 files, 114 lines)
     WINDOW (75 files, 26117 lines)
     XML (4 files, 499 lines)
     XML_IMPORT (0 files, 0 lines)
         IMP_TREE (0 files, 0 lines)
     bin (2 files, 216 lines)
     doc (1 files, 85 lines)
     etc (6 files, 5366 lines)
     fig2dev (0 files, 0 lines)
         dev (0 files, 0 lines)
     lib (8 files, 12081 lines)
         BUGS (2 files, 69 lines)
         addlibs (1 files, 14 lines)
         arb_default (7 files, 694 lines)
         desktop (4 files, 21 lines)
         dtd (2 files, 92 lines)
         export (14 files, 130 lines)
         gde (2 files, 25 lines)
         icons (0 files, 0 lines)
         import (9 files, 680 lines)
             nonformats (7 files, 783 lines)
         inputMasks (9 files, 343 lines)
         macros (4 files, 126 lines)
             .checks (3 files, 675 lines)
             ARB (0 files, 0 lines)
                 SEQ_DATA (1 files, 111 lines)
         motifHack (3 files, 322 lines)
             pixmaps (0 files, 0 lines)
         nas (3 files, 18 lines)
         pictures (102 files, 3713 lines)
             PARS (0 files, 0 lines)
             awt (19 files, 599 lines)
             awtc (2 files, 47 lines)
             consensus (2 files, 368 lines)
             cpro (2 files, 72 lines)
             demo (0 files, 0 lines)
             edit4 (16 files, 819 lines)
             etc (0 files, 0 lines)
             faligner (3 files, 139 lines)
             findcorr (0 files, 0 lines)
             merge (12 files, 473 lines)
             pars (3 files, 184 lines)
             phylo (3 files, 67 lines)
             query (5 files, 133 lines)
             seer (0 files, 0 lines)
             unused (0 files, 0 lines)
                 demo (0 files, 0 lines)
                 findcorr (0 files, 0 lines)
             window (1 files, 24 lines)
         pixmaps (84 files, 3509 lines)
             edit (20 files, 602 lines)
                 unused (0 files, 0 lines)
             icons (7 files, 273 lines)
                 unused (0 files, 0 lines)
             merge (1 files, 48 lines)
             pgt (0 files, 0 lines)
             print (6 files, 239 lines)
                 unused (0 files, 0 lines)
             seer (0 files, 0 lines)
             unused (0 files, 0 lines)
         protein_2nd_structure (0 files, 0 lines)
         rna3d (5 files, 4617 lines)
             images (17 files, 0 lines)
         sellists (9 files, 98 lines)
         submit (3 files, 1061 lines)
     ptpan (0 files, 0 lines)
     util (18 files, 1579 lines)