Here is a list of all file members with links to the files they belong to:

- a -

• A : mem.cxx , trnsprob.h
• A_TO_I : gb_load.h
• aa_3letter_name : AP_codon_table.cxx
• aas : AP_seq_simple_pro.hxx
• ABORTED : mkptypes.cxx
• ABORTED_BY_USER : NT_main.cxx
• abs : f2c.h
• ACCEPT_ANY_PARAMS : gb_aci_impl.h
• accept_proposed_names() : DI_clusters.cxx
• accept_selected_ref_db() : graph_aligner_gui.cxx
• ACI : xferset.cxx
• aci_config_changed_cb() : saicalc.cxx
• ACI_get_standard_commands() : adlang1.cxx , gb_aci.h
• aci_gui_changed_cb() : saicalc.cxx
• ACID : fast_aligner.cxx
• ACM_ADD : awt_modules.hxx
• ACM_EMPTY : awt_modules.hxx
• ACM_FILL : awt_modules.hxx
• ACM_REMOVE : awt_modules.hxx
• Action : NT_taxonomy.cxx
• action_cb_wrapper() : AWTI_edit.cxx
• action_name : AWTI_edit.cxx
• actions : GLwDrawA.c
• active_arb_handlers : arb_handlers.cxx , arb_handlers.h
• active_range_changed_cb() : AW_preset.cxx
• AD_ALIGN : ed4_defs.hxx
• AD_F_ALL : EXP_interface.cxx , GEN_interface.cxx
• AD_INSERT : ed4_defs.hxx
• AD_map_viewer_aw_root : PARS_main.cxx
• AD_map_viewer_cb : TreeDisplay.hxx
• AD_MAP_VIEWER_TYPE : TreeDisplay.hxx
• ad_move_tree_info() : ad_trees.cxx
• AD_NOWRITE : ed4_defs.hxx
• AD_NOWRITE_IF_COMPRESSED : ed4_defs.hxx
• AD_REPLACE : ed4_defs.hxx
• AD_TREE_EXPORT_FORMAT_NEWICK : ad_trees.cxx
• AD_TREE_EXPORT_FORMAT_NEWICK_PRETTY : ad_trees.cxx
• AD_TREE_EXPORT_FORMAT_XML : ad_trees.cxx
• AD_TREE_EXPORT_NODE_NDS : ad_trees.cxx
• AD_TREE_EXPORT_NODE_NDS_TRUNCATED : ad_trees.cxx
• AD_TREE_EXPORT_NODE_SPECIES_NAME : ad_trees.cxx
• ad_tree_set_security() : ad_trees.cxx
• adaptCopiedAlignment() : MG_adapt_ali.cxx
• adaption_enabled() : MG_species.cxx
• ADD : ali_prealigner.cxx
• add() : ClustalV.cxx
• add_area_for_gde() : ED4_main.cxx
• add_boolrule_cb() : saicalc.cxx
• add_bootstrap() : arb_read_tree.cxx
• add_border_to_drawsize() : AWT_canio.cxx
• add_common_property_menu_entries() : AW_preset.cxx
• add_config : MG_gene_species.cxx
• add_dtree_to_dtree() : adoptimize.cxx
• add_field_cb() : xfergui.cxx
• add_for_data_to() : aisc_commands.c
• add_ggaps() : ClustalV.cxx
• ADD_LEN : arb_primer.cxx
• add_link_attributes() : arb_help2xml.cxx
• add_new_input_mask() : AWT_input_mask.cxx
• add_probe_to_collection_event() : probe_design.cxx
• add_promotion() : mkptypes.cxx
• add_rule_cb() : xfergui.cxx
• add_selected_cb() : MG_preserves.cxx
• add_selected_experiment_changed_cb() : EXP_interface.cxx
• add_selected_gene_changed_cb() : GEN_interface.cxx
• add_selected_SAI_changed_cb() : SAIs.cxx
• add_selected_species_changed_cb() : species.cxx
• add_species_to_list_cb() : ED4_detect_bad_ali.cxx
• add_species_to_merge_list() : ED4_no_class.cxx
• add_to_callback_chain() : ad_cb.cxx
• add_to_dtree() : adoptimize.cxx
• add_update_cb() : DI_matr.cxx
• add_warning() : arb_help2xml.cxx
• addarg : macinit.c
• addCallBacks() : SaiProbeVisualization.cxx
• AddCallBacks() : RNA3D_Interface.cxx
• addDefaultTransTable() : ED4_visualizeSAI.cxx
• addElementLen() : arb_dnarates.cxx
• addExcludedSymParts() : mkptypes.cxx
• addid_changed_cb() : AW_names_admin.cxx
• addids_match_info() : MG_names.cxx
• addids_match_info_refresh_cb() : MG_names.cxx
• addinfo() : ureadseq.c
• addmul() : trnsprob.cxx
• addOrUpdateTransTable() : ED4_visualizeSAI.cxx
• addRequiredSymParts() : mkptypes.cxx
• address : f2c.h
• addseq() : ureadseq.c
• addSpeciesToConcatenateList() : NT_concatenate.cxx
• addSymParts() : mkptypes.cxx
• addToAmbiguous() : AP_codon_table.cxx
• AddWhat : PARS_main.cxx
• addword() : mkptypes.cxx
• adjustOligolenAndMismatches() : AWTC_next_neighbours.cxx
• adjustTreeRoot() : NT_syncroot.cxx
• ADMAP_BYTE_ORDER : admap.cxx
• ADMAP_ID : gb_map.h
• ADMAP_ID_LEN : gb_map.h
• ADMAP_VERSION : gb_map.h
• AdminType : AliAdmin.h
• ADMVT_INFO : TreeDisplay.hxx
• ADMVT_NONE : TreeDisplay.hxx
• ADMVT_SELECT : TreeDisplay.hxx
• ADMVT_WWW : TreeDisplay.hxx
• advice_close_cb() : AW_advice.cxx
• advice_currently_shown() : AW_advice.cxx
• advice_disabled() : AW_advice.cxx
• advice_hide_and_close_cb() : AW_advice.cxx
• advice_id_is_set() : AW_advice.cxx
• advice_id_offset() : AW_advice.cxx
• advice_root : AW_advice.cxx
• aed_start_naligning() : ED4_naligner.cxx
• AF : ClustalV.cxx
• af_assert : AP_filter.hxx
• AF_Combine : AP_filter.hxx
• AF_Not : AP_filter.hxx
• AffectedClusters : DI_clusters.cxx
• after() : insdel.cxx
• after_callback_guard() : AWT_db_browser.cxx
• agde_filter : GDE_event.cxx , GDE.cxx
• aint : DNAml_rates_1_0.h
• aisc : mkptypes.cxx
• aisc_accept_calls() : server.c , server.h
• aisc_add_destroy_callback() : server.c , server.h
• aisc_add_message_queue() : client.c
• aisc_assert : aisc_def.h , aisc_global.h , client.c , server.c
• AISC_ATTR_MASK : aisc_global.h
• aisc_attribute_names_list : server.c
• aisc_broadcast() : server.c , server.h
• aisc_c_add_to_bytes_queue() : client.c
• aisc_c_send_bytes_queue() : client.c
• aisc_calc_blocks() : aisc_mix.c
• AISC_CASTSIG : aisc_global.h
• AISC_CCOM_ERROR : client_privat.h
• AISC_CCOM_MESSAGE : client_privat.h
• AISC_CCOM_OK : client_privat.h
• aisc_check_error() : client.c
• aisc_client_command_list : client_privat.h
• aisc_client_link : client.c
• aisc_close() : client.c , client.h
• aisc_collect_sets() : client.c
• aisc_command_list : client_privat.h
• AISC_COMMON : aisc_global.h
• AISC_COPY : client_privat.h
• aisc_core_on_error : client.c
• aisc_create() : client.c , client.h
• AISC_CREATE : client_privat.h
• aisc_d_flags : aisc_extern.c
• aisc_debug_info() : client.c , client.h
• AISC_DEBUG_INFO : client_privat.h
• AISC_DELETE : client_privat.h
• AISC_DUMP : trace.h
• AISC_DUMP_SEP : trace.h
• AISC_FIND : client_privat.h
• aisc_find_lib() : struct_man.c , struct_man.h , names.cxx
• aisc_fork_server() : server.c
• AISC_FORK_SERVER : client_privat.h
• aisc_free_hash() : struct_man.c
• aisc_free_key() : struct_man.c
• aisc_free_link() : client.c
• aisc_get() : client.c , client.h
• AISC_GET : client_privat.h
• aisc_get_keystring() : aisc_extern.c , aisc_extern_privat.h
• aisc_get_keystring_dll_header() : aisc_extern.c , aisc_extern_privat.h
• aisc_get_object_attribute() : server.c
• aisc_get_object_names() : server.c , server.h
• aisc_hash() : struct_man.c
• AISC_INDEX : aisc_global.h
• AISC_INIT : client_privat.h
• aisc_init_client() : client.c
• aisc_init_hash() : struct_man.c
• aisc_insert_hash() : struct_man.c
• aisc_link() : struct_man.c , struct_man.h , names.cxx , PT_family.cxx , PT_match.cxx , PT_new_design.cxx
• AISC_MAGIC_NUMBER : client_privat.h
• AISC_MAGIC_NUMBER_FILTER : client.c , server.c
• aisc_main : server.c , names.cxx , names.h , names_extern.c , PT_main.cxx
• aisc_make_sets() : server.c , server.h
• AISC_MAX_ATTR : client_privat.h
• AISC_MAX_STRING_LEN : client_privat.h
• AISC_MESSAGE_BUFFER_LEN : client_privat.h
• AISC_NO_ANSWER : aisc_global.h
• aisc_nput() : client.c , client.h
• AISC_NSET : client_privat.h
• AISC_OBJ_TYPE_MASK : aisc_global.h
• aisc_object_names : server.c
• aisc_open() : client.c , client.h
• aisc_print_error_to_stderr : client.c
• aisc_put() : client.c , client.h
• aisc_read_hash() : struct_man.c , struct_man.h
• aisc_remove_destroy_callback() : server.c , server.h
• aisc_s_add_to_bytes_queue() : server.c
• aisc_s_send_bytes_queue() : server.c
• aisc_server_bytes_first : server.c
• aisc_server_bytes_last : server.c
• aisc_server_con : server.c
• aisc_server_error : server.c
• aisc_server_errorf() : server.c , server.h
• AISC_SERVER_FAULT : server.c
• aisc_server_hs : server.c
• aisc_server_index : server.c
• aisc_server_load_token() : server.c , server.h
• AISC_SERVER_OK : server.c
• aisc_server_save_token() : server.c , server.h
• aisc_server_shutdown() : server.c , server.h
• aisc_server_sigsegv() : server.c
• AISC_SET : client_privat.h
• aisc_talking() : server.c
• aisc_talking_copy() : server.c
• aisc_talking_create() : server.c
• aisc_talking_debug_info() : server.c
• aisc_talking_delete() : server.c
• aisc_talking_find() : server.c
• aisc_talking_func_proto_double : aisc_func_types.h
• aisc_talking_func_proto_long : aisc_func_types.h
• aisc_talking_func_proto_longp : aisc_func_types.h
• aisc_talking_func_proto_void : aisc_func_types.h
• aisc_talking_function_type : server.c
• aisc_talking_functions : server.c , adcomm.cxx
• aisc_talking_functions_copy : server.c
• aisc_talking_functions_create : server.c
• aisc_talking_functions_delete : server.c
• aisc_talking_functions_find : server.c
• aisc_talking_functions_get : server.c
• aisc_talking_functions_set : server.c
• aisc_talking_get() : server.c
• aisc_talking_get_index() : server.c , server.h
• aisc_talking_init() : server.c
• aisc_talking_nset() : server.c
• aisc_talking_set() : server.c
• aisc_talking_set_index() : server.c
• aisc_talking_sets() : server.c
• AISC_TYPE_BYTES : aisc_global.h
• AISC_TYPE_COMMON : aisc_global.h
• AISC_TYPE_DOUBLE : aisc_global.h
• AISC_TYPE_INT : aisc_global.h
• AISC_TYPE_NONE : aisc_global.h
• AISC_TYPE_STRING : aisc_global.h
• aisc_unlink() : struct_man.c , struct_man.h
• AISC_VAR_TYPE_MASK : aisc_global.h
• ALA : AP_seq_simple_pro.hxx
• ALI_A_CODE : ali_misc.hxx
• ALI_ADMIN_TYPES : AliAdmin.h
• ALI_ALIGNER_DEL : ali_aligner.hxx
• ALI_ALIGNER_INS : ali_aligner.hxx
• ALI_ALIGNER_MULTI_FLAG : ali_aligner.hxx
• ALI_ALIGNER_SUB : ali_aligner.hxx
• ali_assert : AliAdmin.h , TranslateRealign.cxx
• ali_base_to_number() : ali_misc.hxx
• ALI_C_CODE : ali_misc.hxx
• ali_checklen_cb() : AdminGui.cxx
• ALI_CONSENSUS : ali_main.cxx
• ALI_create_admin_window() : AdminGui.cxx , AliAdmin.h
• ALI_DIAG : ali_pathmap.hxx
• ALI_DOT_CODE : ali_misc.hxx
• ali_error() : ali_main.cxx , ali_misc.hxx
• ALI_ERROR : ali_main.cxx
• ali_fatal_error() : ali_main.cxx , ali_misc.hxx
• ali_format_cb() : AdminGui.cxx
• ALI_G_CODE : ali_misc.hxx
• ALI_GAP_CODE : ali_misc.hxx
• ALI_INTERVALS : ali_main.cxx
• ali_is_base() : ali_misc.hxx
• ali_is_dot() : ali_misc.hxx
• ali_is_gap() : ali_misc.hxx
• ali_is_nbase() : ali_misc.hxx
• ali_is_real_base() : ali_misc.hxx
• ali_is_real_base_or_gap() : ali_misc.hxx
• ALI_LEFT : ali_pathmap.hxx
• ALI_LUP : ali_pathmap.hxx
• ali_man_line : ali_main.cxx
• ALI_MAP_ : ali_profile.hxx
• ali_message() : ali_misc.hxx
• ALI_N_CODE : ali_misc.hxx
• ali_number_to_base() : ali_misc.hxx
• ali_out_of_memory_if() : ali_misc.hxx
• ALI_PREALIGNER_DEL : ali_prealigner.hxx
• ALI_PREALIGNER_INS : ali_prealigner.hxx
• ALI_PREALIGNER_MULTI_FLAG : ali_prealigner.hxx
• ALI_PREALIGNER_SUB : ali_prealigner.hxx
• ali_print_sequence() : ali_misc.hxx
• ALI_PROFILE_BORDER_LEFT : ali_profile.hxx
• ALI_PROFILE_BORDER_RIGHT : ali_profile.hxx
• ALI_PT_MODE : ali_pt.hxx
• ALI_realign_marked() : TranslateRealign.cxx , TranslateRealign.h
• ali_sequence_to_postree_sequence() : ali_misc.hxx
• ali_sequence_to_string() : ali_misc.hxx
• ali_string_to_sequence() : ali_misc.hxx
• ALI_translate_marked() : TranslateRealign.cxx , TranslateRealign.h
• ALI_U_CODE : ali_misc.hxx
• ALI_UNDEF : ali_pathmap.hxx
• ALI_UNDEF_CODE : ali_misc.hxx
• ALI_UP : ali_pathmap.hxx
• ali_version : ali_main.cxx
• ali_warning() : ali_misc.hxx
• alidata2buffer() : insdel.cxx
• AliDataPtr : insdel.cxx
• Align() : align.cxx , i-hopper.h
• ALIGN : admap.cxx
• ALIGN_BITS : admap.cxx
• align_error() : fast_aligner.cxx
• ALIGN_MARKER : aisc_interpreter.h
• alignCompactedTo() : fast_aligner.cxx
• aligner_config_mapping : fast_aligner.cxx
• Aligner_get_consensus_func : fast_aligner.hxx
• Aligner_get_first_selected_species : fast_aligner.hxx
• Aligner_get_helix_string : fast_aligner.hxx
• Aligner_get_next_selected_species : fast_aligner.hxx
• Aligner_get_selected_range : fast_aligner.hxx
• ALIGNMENT : AliAdmin.cxx
• alignment_bytes : admap.cxx
• alignment_name : arb_dnarates.cxx
• alignment_vars_callback() : AdminGui.cxx
• alignQuality() : fast_aligner.cxx
• alignTo() : fast_aligner.cxx
• alignToGroupConsensus() : fast_aligner.cxx
• alignToNextRelative() : fast_aligner.cxx
• AlignTwo() : align.cxx
• aligs : ali_main.cxx
• alist : ClustalV.cxx
• alitype_changed_cb() : NT_concatenate.cxx
• ALL : GDE_def.h , defs.h , NT_taxonomy.cxx
• ALL_AVAILABLE_FIELDS : xfergui.cxx
• ALL_CLUSTERS : DI_clusters.cxx
• ALL_DISPLAY_TYPES : GEN_map.cxx
• all_flag : adname.cxx
• ALL_FONTS_ID : AW_preset.cxx
• all_fontsOrSizes_changed_cb() : AW_preset.cxx
• all_gene_structs : PT_main.cxx
• all_sons_saved() : PT_buildtree.cxx
• ALL_TABLES_MASK : AP_codon_table.hxx
• allBranchlengthsAreDefined() : AP_tree_edge.cxx , ap_tree_nlen.hxx
• alloc_buffer() : arbdb.cxx
• alloc_failure_panic() : arb_mem.cxx
• allocRNS() : rns.c
• allow_callbacks : MG_gene_species.cxx
• allow_overlap_toggled_cb : AWT_canio.cxx
• allow_page_size_check_cb : AWT_canio.cxx
• allow_probe_match_event : probe_design.cxx
• allow_selection2awar_update : NT_edconf.cxx
• allow_to_activate_display : NT_edconf.cxx
• allow_update_global_cursorpos : ED4_cursor.cxx
• ALLOWED_DATES : gb_main.h
• ALLOWED_KEYS : gb_main.h
• allsymbols : ureadseq.c
• allTrackers() : AW_inotify.cxx
• ALPHA : glpng.c
• ALPHA_DICT_OFFSET() : adoptimize.cxx
• ALPHA_HELIX : ed4_protein_2nd_structure.hxx
• ALPHA_LOWER : arb_help2xml.cxx
• ALPHA_UPPER : arb_help2xml.cxx
• AlphaCallback : glpng.c
• ambiguous_codons : AP_codon_table.cxx
• amino_acid_order : ClustalV.cxx
• amino_acids : ED4_protein_2nd_structure.cxx
• aminos : ureadseq.c
• an_add_short() : names.cxx
• an_autocaps() : names.cxx
• an_complete_shrt() : names.cxx
• an_find_shrt_prefix() : names.cxx
• an_get_prefix_hash() : names.cxx
• an_get_short() : names.cxx
• AN_global : names.cxx
• an_make_prefix() : names.cxx
• an_remove_short() : names.cxx
• an_shorts_elems() : names.cxx
• an_stricmp() : names.cxx
• an_strlwr() : names.cxx
• an_strnicmp() : names.cxx
• AND : AP_filter.hxx , query_expr.h
• anerror : arb_dnarates.cxx
• AngleBufferMode : SEC_split.cxx
• announce_recording() : trackers.cxx
• announce_renamed() : AWT_TreeAwars.cxx
• ANY_DIR : aw_file.hxx
• ANY_EDGE : pars_awars.h
• ANY_SETUP : test_unit.h
• AnyWinCB : aw_window.hxx
• anz_elem_marked : MP_main.cxx , MultiProbe.hxx
• anz_elem_unmarked : MP_main.cxx , MultiProbe.hxx
• AP_A : AP_pro_a_nucs.hxx
• ap_assert : AP_TreeShader.hxx , AP_matrix.cxx , AP_matrix.hxx , AP_pos_var.cxx , AP_sequence.hxx
• AP_BASES : AP_pro_a_nucs.hxx
• AP_BL_BL_ONLY : ap_tree_nlen.hxx
• AP_BL_BOOTSTRAP_ESTIMATE : ap_tree_nlen.hxx
• AP_BL_BOOTSTRAP_LIMIT : ap_tree_nlen.hxx
• AP_BL_MODE : ap_tree_nlen.hxx
• AP_BL_NNI_ONLY : ap_tree_nlen.hxx
• AP_C : AP_pro_a_nucs.hxx
• ap_calc_bootstrap_remark() : AP_tree_edge.cxx
• ap_calc_bootstrap_remark_sub() : AP_tree_edge.cxx
• AP_calc_pos_var_pars() : AP_pos_var_pars.cxx
• AP_create_con_expert_window() : AP_consensus.cxx , NT_local_proto.h
• AP_create_consensus_var() : AP_consensus.cxx , NT_local_proto.h
• AP_create_dna_to_ap_bases() : AP_pro_a_nucs.cxx , AP_pro_a_nucs.hxx
• AP_create_max_freq_window() : AP_consensus.cxx , NT_local_proto.h
• AP_create_pos_var_pars_window() : AP_pos_var_pars.cxx , NT_local_proto.h
• AP_DONT_JUMP : TreeDisplay.hxx
• AP_DOT : AP_pro_a_nucs.hxx
• AP_dump_index_event() : arb_probe.cxx
• AP_DYNAMIK : ap_tree_nlen.hxx
• AP_F_ALL : AP_Tree.hxx
• AP_F_LOADED : AP_Tree.hxx
• AP_F_MATRIX : AP_Tree.hxx
• AP_F_NLOADED : AP_Tree.hxx
• AP_F_SEQUENCES : AP_Tree.hxx
• AP_F_TREE : AP_Tree.hxx
• AP_FLOAT : AP_matrix.hxx , NJ.hxx , AP_sequence.hxx
• AP_G : AP_pro_a_nucs.hxx
• AP_GAP : AP_pro_a_nucs.hxx
• AP_get_codons() : AP_codon_table.cxx , AP_codon_table.hxx
• AP_ILLEGAL : AP_pro_a_nucs.hxx
• AP_initialize_codon_tables() : AP_codon_table.cxx , AP_codon_table.hxx
• AP_JUMP_ALLOW_HCENTER : TreeDisplay.hxx
• AP_JUMP_AUTO_UNFOLD : TreeDisplay.hxx
• AP_JUMP_BE_VERBOOSE : TreeDisplay.hxx
• AP_JUMP_BY_BUTTON : TreeDisplay.hxx
• AP_JUMP_FORCE_CENTER : TreeDisplay.hxx
• AP_JUMP_FORCE_HCENTER : TreeDisplay.hxx
• AP_JUMP_FORCE_VCENTER : TreeDisplay.hxx
• AP_JUMP_KEEP_VISIBLE : TreeDisplay.hxx
• AP_JUMP_LOGICAL_UNZOOM : TreeDisplay.hxx
• AP_JUMP_REASON_GROUP : TreeDisplay.hxx
• AP_JUMP_REASON_SPECIES : TreeDisplay.hxx
• AP_JUMP_REASON_STYLE : TreeDisplay.hxx
• AP_JUMP_REASON_TREE : TreeDisplay.hxx
• AP_JUMP_SMART_CENTER : TreeDisplay.hxx
• ap_just_tree_rek() : AP_Tree.cxx
• AP_LEFT : ap_tree_nlen.hxx
• AP_LIST_NDS : TreeDisplay.hxx
• AP_LIST_SIMPLE : TreeDisplay.hxx
• ap_main : ap_main.hxx , PARS_main.cxx
• ap_mark_degenerated() : AP_Tree.cxx
• ap_mark_duplicates_rek() : AP_Tree.cxx
• AP_MAX : AP_pro_a_nucs.hxx
• AP_NO_REDUCTION : ap_tree_nlen.hxx
• AP_nodeDelCb : AP_Tree.hxx
• ap_pro : AP_seq_simple_pro.hxx
• AP_probe_design_event() : arb_probe.cxx
• AP_probe_iterate_event() : arb_probe.cxx
• AP_probe_match_event() : arb_probe.cxx
• AP_PROTEINS : AP_seq_protein.hxx
• AP_QUADRAT_MAX : pars_awars.h
• AP_QUADRAT_START : pars_awars.h
• AP_RIGHT : ap_tree_nlen.hxx
• AP_rootChangedCb : AP_Tree.hxx
• AP_STACK_MODE : AP_buffer.hxx
• AP_STATIC : ap_tree_nlen.hxx
• AP_T : AP_pro_a_nucs.hxx
• AP_timer() : AP_filter.cxx , AP_filter.hxx , AP_sequence.hxx
• AP_tree_display_style : TreeDisplay.hxx
• AP_TREE_IRS : TreeDisplay.hxx
• AP_tree_jump_reason : TreeDisplay.hxx
• AP_tree_jump_type : TreeDisplay.hxx
• ap_tree_node_deleted() : AP_Tree.cxx
• AP_TREE_NORMAL : TreeDisplay.hxx
• AP_TREE_RADIAL : TreeDisplay.hxx
• AP_tree_set : AP_TreeSet.hxx
• AP_tree_set_citer : AP_TreeSet.hxx
• AP_tree_set_iter : AP_TreeSet.hxx
• AP_TREE_SIDE : ap_tree_nlen.hxx
• AP_UNDEF_BL : AP_tree_edge.cxx
• AP_UPDATE_ERROR : AP_Tree.hxx
• AP_UPDATE_FLAGS : AP_Tree.hxx
• AP_UPDATE_OK : AP_Tree.hxx
• AP_UPDATE_RELINKED : AP_Tree.hxx
• AP_UPDATE_RELOADED : AP_Tree.hxx
• AP_user_pop_cb() : PARS_main.cxx
• AP_user_push_cb() : PARS_main.cxx
• APBL_NONE : ap_tree_nlen.hxx
• APIENTRY : glpng.h
• apos_cache : PT_rangeCheck.h
• apos_iter : PT_rangeCheck.h
• APP_A : AP_seq_protein.hxx
• APP_B : AP_seq_protein.hxx
• APP_C : AP_seq_protein.hxx
• APP_D : AP_seq_protein.hxx
• APP_DOT : AP_seq_protein.hxx
• APP_E : AP_seq_protein.hxx
• APP_F : AP_seq_protein.hxx
• APP_G : AP_seq_protein.hxx
• APP_GAP : AP_seq_protein.hxx
• APP_H : AP_seq_protein.hxx
• APP_I : AP_seq_protein.hxx
• APP_ILLEGAL : AP_seq_protein.hxx
• APP_J : AP_seq_protein.hxx
• APP_K : AP_seq_protein.hxx
• APP_L : AP_seq_protein.hxx
• APP_M : AP_seq_protein.hxx
• APP_MAX : AP_seq_protein.hxx
• APP_N : AP_seq_protein.hxx
• APP_P : AP_seq_protein.hxx
• APP_Q : AP_seq_protein.hxx
• APP_R : AP_seq_protein.hxx
• APP_S : AP_seq_protein.hxx
• APP_STAR : AP_seq_protein.hxx
• APP_T : AP_seq_protein.hxx
• APP_V : AP_seq_protein.hxx
• APP_W : AP_seq_protein.hxx
• APP_X : AP_seq_protein.hxx
• APP_Y : AP_seq_protein.hxx
• APP_Z : AP_seq_protein.hxx
• appContext : RNA3D_Interface.cxx
• APPEARS_IN_HEADER : arb_export_rates.cxx
• Append() : prototypes.h , util.cxx
• append_known_len() : util.cxx
• appendcbtype : ad_cb.cxx
• appendComment() : ED4_search.cxx
• appendData() : Feature.cxx
• AppendNA() : GDE_FileIO.cxx , GDE_proto.h
• AppendNA_and_free() : GDE_arbdb_io.cxx
• appendNameAndUsedBasePositions() : fast_aligner.cxx
• appendSpaced() : tools.h
• appendValue() : UnitTester.cxx
• apply_ACI() : gb_aci.cxx
• apply_auto_numeric_binop() : adlang1.cxx
• apply_command_to_alignment() : insdel.cxx
• apply_double_binop() : adlang1.cxx
• apply_filters() : adlang1.cxx
• apply_numeric_binop() : adlang1.cxx
• apply_ScalerType() : AW_window.cxx
• apply_to_origin() : adlang1.cxx
• applyToItemFoundByKey() : adlang1.cxx
• approve_pos() : adlang1.cxx
• APREFIX_DIFF_SAVE : ED4_seq_colors.cxx
• APREFIX_DIFF_TEMP : ED4_seq_colors.cxx
• aprm : arb_primer.cxx
• aps_correct_filename() : AWT_asciiprint.cxx
• AQT_ACI : query_expr.h
• AQT_EMPTY : query_expr.h
• AQT_ENDS_WITH : query_expr.h
• AQT_EXACT_MATCH : query_expr.h
• AQT_GREATER : query_expr.h
• AQT_INVALID : query_expr.h
• AQT_LOWER : query_expr.h
• AQT_NON_EMPTY : query_expr.h
• AQT_OCCURS : query_expr.h
• AQT_REGEXPR : query_expr.h
• AQT_STARTS_WITH : query_expr.h
• AQT_WILDCARD : query_expr.h
• arb2internal_name() : PT_etc.cxx
• ARB_5_99 : graph_aligner_gui.cxx
• ARB_7_1 : graph_aligner_gui.cxx
• ARB_ABORT : gb_localdata.h
• ARB_alloc() : arb_mem.h
• ARB_alloc_aligned() : arb_mem.h
• ARB_arbout_status : arb_handlers.cxx
• arb_assert : arb_assert.h
• arb_assert_backtrace_and_crash : arb_assert.h
• arb_assert_backtrace_and_stop : arb_assert.h
• arb_assert_crash : arb_assert.h
• arb_assert_stop : arb_assert.h
• ARB_bind_global_awars() : AW_global_awars.cxx , aw_root.hxx
• ARB_BUILD_DATE : arb_build.h
• ARB_BUILD_HOST : arb_build.h
• ARB_BUILD_USER : arb_build.h
• ARB_BUILD_YEAR : arb_build.h
• ARB_calloc() : arb_mem.h
• ARB_CHECK_DB_TIMER : dbserver.cxx
• ARB_COMMIT : gb_localdata.h
• arb_count_keys() : arb_primer.cxx
• ARB_CRASH_CODE : arb_backtrace.h
• ARB_date_string() : arb_string.cxx , arb_string.h
• ARB_dateTime_suffix() : arb_string.cxx , arb_string.h
• ARB_declare_global_awars() : AW_global_awars.cxx , aw_root.hxx
• ARB_delete_columns_using_SAI() : insdel.cxx , insdel.h
• ARB_edge_type : TreeNode.h
• ARB_executable() : arb_misc.cxx , arb_misc.h
• ARB_files_are_equal() : arb_diff.h
• ARB_files_differ() : arb_diff.h
• arb_filter : arb_dnarates.cxx
• ARB_float_2_ascii() : arb_misc.cxx , arb_misc.h
• ARB_format_alignment() : insdel.cxx , insdel.h
• arb_forward_list : arb_forward_list.h
• ARB_GENE_REF : DBwriter.cxx
• ARB_getenv_ignore_empty() : arb_misc.cxx , arb_misc.h
• arb_gethostbyname() : arb_cs.cxx
• arb_gethostname() : arb_cs.cxx , arb_cs.h
• ARB_global_awars_initialized() : AW_global_awars.cxx , aw_root.hxx
• ARB_HIDDEN : adGene.h
• ARB_in_expert_mode() : AW_global_awars.cxx , aw_root.hxx
• ARB_in_novice_mode() : aw_root.hxx
• ARB_init_global_awars() : aw_root.hxx
• ARB_INPUT_MASK_ID : AWT_input_mask.cxx
• ARB_insdel_columns() : insdel.cxx , insdel.h
• ARB_insert_columns_using_SAI() : insdel.cxx , insdel.h
• ARB_install_handlers() : arb_handlers.cxx , arb_handlers.h
• ARB_is_alignment_relative_data() : insdel.cxx , insdel.h
• ARB_keep_string() : arb_string.cxx , arb_string.h
• arb_look_and_kill_server() : servercntrl.cxx , servercntrl.h
• arb_look_and_start_ptserver() : servercntrl.cxx , servercntrl.h
• arb_look_and_start_server() : servercntrl.cxx , servercntrl.h
• ARB_main() : mkptypes.cxx , main.cxx , prototypes.h , db_server.cxx , DI_main.cxx , ED4_main.cxx , arb_help2xml.cxx , ali_main.cxx , names.cxx , NT_main.cxx , PARS_main.cxx , arb_proto_2_xsub.cxx , PH_main.cxx , PT_main.cxx , pt_prototypes.h , fb_test.cxx , Analyser.cxx , arb_main.cxx , arb_2_ascii.cxx , arb_2_bin.cxx , arb_a2ps.c , arb_consensus_tree.cxx , arb_dnarates.cxx , arb_export_rates.cxx , arb_flush_mem.cxx , arb_gene_probe.cxx , arb_message.cxx , arb_perf_test.cxx , arb_primer.cxx , arb_probe.cxx , arb_probe_match.cxx , arb_replace.cxx , arb_sub2ascii.cxx , arb_test.cxx , sim.c , WETC_main.cxx
• ARB_MEMORY_INDEX : gb_memory.h
• ARB_NO_TRANS : gb_localdata.h
• arb_open_socket() : arb_cs.cxx , arb_cs.h
• arb_open_tcp_socket() : arb_cs.cxx
• arb_open_unix_socket() : arb_cs.cxx
• ARB_path_contains_unwanted_chars() : arb_misc.cxx , arb_misc.h
• ARB_PATH_LOWER_LIMIT : arb_pathlen.h
• ARB_PATH_MAX : arb_pathlen.h
• ARB_PATH_UPPER_LIMIT : arb_pathlen.h
• arb_print_primer() : arb_primer.cxx
• arb_print_server_params() : servercntrl.cxx , servercntrl.h
• arb_prm_menu() : arb_primer.cxx
• arb_prm_primer() : arb_primer.cxx
• arb_prm_read() : arb_primer.cxx
• ARB_realloc() : arb_mem.h
• ARB_recalloc() : arb_mem.h
• ARB_redirect_handlers_to() : arb_handlers.cxx , arb_handlers.h
• arb_reduce_primer_len() : arb_primer.cxx
• ARB_SERVE_DB_TIMER : dbserver.cxx
• arb_shell_expand() : arb_pattern.cxx , arb_pattern.h
• ARB_SIGSEGV : arb_assert.h
• ARB_sleep() : arb_sleep.h
• arb_socket_read() : arb_cs.cxx , arb_cs.h
• arb_socket_write() : arb_cs.cxx , arb_cs.h
• arb_start_server() : servercntrl.cxx , servercntrl.h
• arb_status_type : arb_handlers.h
• ARB_STOP : arb_assert.h
• ARB_strBeginsWith() : arb_str.h
• ARB_strchrnul() : arb_string.h
• ARB_strdup() : arb_string.h
• ARB_strduplen() : arb_string.h
• ARB_stricmp() : arb_str.h
• ARB_stringdup() : arb_stdstring.h
• ARB_strlower() : arb_str.h
• ARB_strndup() : arb_string.h
• ARB_strNULLcmp() : arb_str.h
• ARB_strpartdup() : arb_string.h
• ARB_strupper() : arb_str.h
• ARB_SVN_BRANCH : svn_revision.h
• ARB_SVN_BRANCH_IS_TAG : svn_revision.h
• ARB_SVN_REVISION : svn_revision.h
• arb_tcp_dat : adtcp.cxx
• ARB_test_mem_equal() : arb_diff.h
• ARB_textfiles_have_difflines() : arb_diff.cxx , arb_diff.h
• arb_trace_argv() : servercntrl.cxx , servercntrl.h
• ARB_TRANS : gb_localdata.h
• ARB_TRANS_TYPE : gb_localdata.h
• ARB_tree_node_del_cb : ARB_Tree.hxx
• arb_tree_species_deleted_cb() : ARB_Tree.cxx
• arb_unordered_map : arb_unordered_map.h
• ARB_VERSION : arb_build.h
• ARB_VERSION_DETAILED : arb_build.h
• arb_wait_for_server() : servercntrl.cxx
• ARB_warn_about_unwanted_chars() : arb_misc.cxx , arb_misc.h
• ARB_zfclose() : arb_zfile.cxx , arb_zfile.h
• ARB_zfopen() : arb_zfile.cxx , arb_zfile.h
• Arbdb_get_curelem() : GDE_arbdb_io.cxx , GDE_proto.h
• arberr : arb_handlers.cxx
• ArbIntByStringMap : probe_collection.hxx
• ArbIntByStringMapConstIter : probe_collection.hxx
• ArbIntByStringMapConstRIter : probe_collection.hxx
• ArbIntByStringMapIter : probe_collection.hxx
• ArbIntByStringMapRIter : probe_collection.hxx
• ArbMatchResultPtrByDoubleMultiMap : probe_collection.hxx
• ArbMatchResultPtrByDoubleMultiMapIter : probe_collection.hxx
• ArbMatchResultPtrByStringMultiMap : probe_collection.hxx
• ArbMatchResultPtrByStringMultiMapConstIter : probe_collection.hxx
• ArbMatchResultPtrByStringMultiMapIter : probe_collection.hxx
• ArbMatchResultPtrDoublePair : probe_collection.cxx
• ArbMatchResultPtrStringPair : probe_collection.cxx
• ArbMatchResultsEnumCallback : probe_collection.hxx
• ArbMatchResultSetByStringMap : probe_collection.hxx
• ArbMatchResultSetByStringMapConstIter : probe_collection.hxx
• ArbMatchResultSetByStringMapConstRIter : probe_collection.hxx
• ArbMatchResultSetByStringMapIter : probe_collection.hxx
• ArbMatchResultSetByStringMapRIter : probe_collection.hxx
• ArbMatchResultSetStringPair : probe_collection.hxx
• ArbMIN_PROBE_LENGTH : probe_collection.cxx
• arbout : arb_handlers.cxx
• arbout_handlers : arb_handlers.cxx
• ArbProbePtrList : probe_collection.hxx
• ArbProbePtrListConstIter : probe_collection.hxx
• ArbProbePtrListIter : probe_collection.hxx
• ArbStringIntPair : probe_collection.hxx
• ArbStringList : probe_collection.hxx
• ArbStringListConstIter : probe_collection.hxx
• arbtcpdat_changed_cb() : AWT_sel_boxes.cxx
• are_adjacent_regions() : SEC_root.hxx
• are_not_in_tree() : TreeCallbacks.cxx
• area_manager_spec : ED4_manager.cxx
• areEqual() : align.cxx
• ARG : AP_seq_simple_pro.hxx
• ArgFun : aisc_commands.c
• argp : seq_search.cxx
• ArgType : NT_main.cxx
• ArgumentIter : arb_proto_2_xsub.cxx
• Arguments : arb_proto_2_xsub.cxx
• ARM_BOTTOM : awt_modules.hxx
• ARM_DOWN : awt_modules.hxx
• ARM_TOP : awt_modules.hxx
• ARM_UP : awt_modules.hxx
• ARRAY_ELEMS : arb_defs.h
• ARROW_LENGTH : ED4_terminal.cxx
• as_text() : UnitTester.cxx
• Ascii2NA() : GDE_FileIO.cxx , GDE_proto.h
• AsciiTime() : GDE_Genbank.cxx
• ask_about_existing_gene_species : GEN_map.cxx
• ask_for_conversion_params() : main.cxx
• ask_to_overwrite_alignment : GEN_map.cxx
• askCopyMoveRuleset_cb() : xfergui.cxx
• askout : readseq.c
• ASKtoOverWriteData : ED4_ProteinViewer.cxx
• ASN : AP_seq_simple_pro.hxx
• ASP : AP_seq_simple_pro.hxx
• ASS : SEC_main.cxx
• ASS_EOF : SEC_main.cxx
• ASS_EOS : SEC_main.cxx
• ASS_START : SEC_main.cxx
• assert : arb_dnarates.cxx , defines.h
• assert_alphanumeric : names.cxx
• ASSERT_FALSE : arb_assert.h
• assert_no_auto_refresh_for : awt_canvas.hxx
• ASSERT_NO_ERROR : arb_assert.h
• ASSERT_NONE : arb_assert.h
• ASSERT_NULL_RESULT : arb_assert.h
• assert_or_exit : arb_assert.h
• ASSERT_RESULT : arb_assert.h
• ASSERT_RESULT_PREDICATE : arb_assert.h
• ASSERT_TRUE : arb_assert.h
• ASSERT_VALID_TREE : TreeNode.h
• ASSERT_VALID_TREE_OR_NULL : TreeNode.h
• ASSERT_VIA_IS : static_assert.h
• ASSERTING_CONSTEXPR_INLINE : arb_assert.h
• ASSERTING_CONSTEXPR_INLINE_Cxx14 : arb_assert.h
• AST_FORWARD : arb_handlers.h
• AST_RANDOM : arb_handlers.h
• ASX : AP_seq_simple_pro.hxx
• at_assert : ARB_Tree.hxx
• ATOLPARAM : trnsprob.h
• ATPL_GC_LOCAL : AW_preset.cxx
• ATPL_GCMAN_LOCAL : AW_preset.cxx
• ATTRIBLIST_SIZE : GLwDrawA.c
• AUTHOR : defs.h
• auto_calc_changed_cb() : DI_matr.cxx
• AUTO_FLUSH : aw_device.hxx
• auto_match_cb() : probe_design.cxx
• auto_match_cb_settings : probe_design.cxx
• auto_match_changed() : probe_design.cxx
• auto_match_sensitive_awars : probe_design.cxx
• auto_refresh_cb() : NT_sync_scroll.cxx
• auto_select_pseudo_species() : GEN_interface.cxx
• AUTODETECT_STARTPOS : TranslateRealign.h
• automark_changed_cb() : NT_branchAnalysis.cxx
• autorefresh_info : AW_file.cxx
• autorefresh_selboxes() : AW_file.cxx
• autosearch_triggered : ui_species.cxx
• autoselect_cb() : ED4_visualizeSAI.cxx
• av_assert : AliView.cxx
• AvailCategory : xfergui.cxx
• availfield_selected_cb() : xfergui.cxx
• avoid_empty_target_name() : AWTI_export.cxx
• avoid_multi_refresh : AW_file.cxx
• avoid_overflow() : aw_rgb.hxx
• AW_activateColorRange() : AW_preset.cxx , aw_preset.hxx
• AW_active : aw_base.hxx
• AW_add_inotification() : AW_inotify.cxx , aw_inotify.hxx
• AW_advice() : AW_advice.cxx , aw_advice.hxx
• AW_ADVICE_HELP : aw_advice.hxx
• AW_ADVICE_HELP_POPUP : aw_advice.hxx
• AW_ADVICE_SIMPLE : aw_advice.hxx
• AW_ADVICE_TOGGLE : aw_advice.hxx
• AW_ADVICE_TOGGLE_AND_HELP : aw_advice.hxx
• AW_Advice_Type : aw_advice.hxx
• AW_ALL_DEVICES : aw_device.hxx
• AW_ALL_DEVICES_SCALED : aw_device.hxx
• AW_ALL_DEVICES_UNSCALED : aw_device.hxx
• AW_alpha_Size_Supported : AW_window_ogl.cxx , aw_window_ogl.hxx
• AW_area : aw_base.hxx
• aw_ask_sure() : AW_question.cxx , aw_question.hxx
• aw_assert : aw_position.hxx , aw_rgb.hxx , aw_root.hxx , aw_scalar.hxx , AW_xkey.cxx
• AW_AT_AUTO : aw_window.hxx
• AW_AT_MAXSIZE : aw_window.hxx
• AW_AT_SIZE_AND_ATTACH : aw_window.hxx
• AW_at_storage_type : aw_window.hxx
• aw_attach_widget() : AW_button.cxx , aw_varupdate.hxx
• aw_awar_2_color : AW_root.cxx
• aw_awar_name_height : AW_window.cxx
• aw_awar_name_posx : AW_window.cxx
• aw_awar_name_posy : AW_window.cxx
• aw_awar_name_reset : AW_window.cxx
• aw_awar_name_width : AW_window.cxx
• AW_BIT : aw_base.hxx
• AW_BITS : aw_base.hxx
• AW_bitset : aw_base.hxx
• AW_borders : aw_base.hxx
• AW_BOTTOM_AREA : aw_base.hxx
• AW_BUTTON_LEFT : aw_window.hxx
• AW_BUTTON_MIDDLE : aw_window.hxx
• AW_BUTTON_NONE : aw_window.hxx
• AW_BUTTON_RIGHT : aw_window.hxx
• AW_BYTE : aw_base.hxx
• AW_BYTES : aw_base.hxx
• AW_CALC_OFFSET_ON_EXPOSE : aw_window_Xm.hxx
• aw_calc_WM_offsets_delayed() : AW_window.cxx
• AW_cb_struct_guard : aw_window.hxx
• AW_CL : cb.h , aw_base.hxx
• AW_CLEAN_BOLD : aw_device.hxx
• AW_CLEAN_MEDIUM : aw_device.hxx
• aw_clear_and_hide_message_cb() : AW_status.cxx
• aw_clear_message_cb() : AW_status.cxx , aw_status.hxx
• AW_CLICK : aw_device.hxx
• AW_CLICK_DROP : aw_device.hxx
• AW_clock_cursor() : AW_root.cxx , aw_window.hxx
• aw_closestatus() : AW_status.cxx , aw_status.hxx
• AW_COLOR_GROUP_NAME_LEN : aw_color_groups.hxx
• AW_COLOR_GROUP_PREFIX : aw_color_groups.hxx
• AW_COLOR_GROUPS : aw_color_groups.hxx
• AW_color_groups_active() : aw_color_groups.hxx , AW_preset.cxx
• AW_color_idx : aw_base.hxx
• AW_COPY : aw_device.hxx
• AW_copy_GC_colors() : AW_preset.cxx , aw_preset.hxx
• AW_COURIER : aw_device.hxx
• AW_COURIER_BOLD : aw_device.hxx
• AW_COURIER_BOLD_OBLIQUE : aw_device.hxx
• AW_COURIER_OBLIQUE : aw_device.hxx
• aw_cp_awar_2_widget_cb() : AW_awar.cxx
• aw_create_color_chooser_window() : AW_preset.cxx
• aw_create_colorslider_awars() : AW_preset.cxx
• AW_create_fileselection() : AW_file.cxx , aw_file.hxx
• AW_create_fileselection_awars() : AW_file.cxx , aw_file.hxx
• aw_create_font_chooser_awars() : AW_preset.cxx
• aw_create_font_chooser_window() : AW_preset.cxx
• AW_create_gc_window() : AW_preset.cxx , aw_preset.hxx
• AW_create_gc_window_named() : AW_preset.cxx , aw_preset.hxx
• AW_create_namesadmin_awars() : AW_names_admin.cxx , AW_rename.hxx
• aw_create_shell() : AW_window.cxx , aw_window_Xm.hxx
• AW_create_standard_fileselection() : aw_file.hxx
• AW_cursor_insert : aw_device.hxx
• AW_cursor_overwrite : aw_device.hxx
• AW_cursor_type : aw_device.hxx
• AW_DASHED : aw_device.hxx
• AW_DATA_BG : aw_base.hxx
• AW_DB : aw_base.hxx
• AW_DB_selection_refresh_cb() : AW_select.cxx
• AW_default : aw_base.hxx
• AW_DEFAULT_BOLD_FONT : aw_device.hxx
• AW_DEFAULT_FIXED_FONT : aw_device.hxx
• AW_DEFAULT_NORMAL_FONT : aw_device.hxx
• aw_detect_text_size() : AW_button.cxx , aw_global.hxx
• AW_DEVICE_CLICK : aw_device.hxx
• AW_DEVICE_PRINTER : aw_device.hxx
• AW_DEVICE_SCREEN : aw_device.hxx
• AW_DEVICE_SIZE : aw_device.hxx
• AW_DEVICE_TYPE : aw_device.hxx
• AW_displayColorRange() : AW_preset.cxx , aw_preset.hxx
• AW_DOTTED : aw_device.hxx
• AW_draw_string_on_printer() : AW_print.cxx
• AW_draw_string_on_screen() : AW_Xm.cxx
• AW_edit() : AW_edit.cxx , aw_edit.hxx
• AW_edit_notified() : AW_edit.cxx , aw_edit.hxx
• AW_error : aw_root.hxx
• AW_ERROR_BUFFER : aw_root.hxx
• AW_EST_BUFFER : AW_status.cxx
• AW_event_type : aw_window.hxx
• AW_exposeCB() : AW_window.cxx
• AW_extract_directory() : AW_file.cxx , aw_file.hxx
• aw_fb : AW_root.cxx
• AW_FILE_SELECT_BASE : AW_modal.cxx
• AW_FILE_SELECT_DIR_AWAR : AW_modal.cxx
• AW_FILE_SELECT_FILE_AWAR : AW_modal.cxx
• AW_FILE_SELECT_FILTER_AWAR : AW_modal.cxx
• AW_FILE_SELECT_TITLE_AWAR : AW_modal.cxx
• AW_FIXED : aw_device.hxx
• AW_FLOAT : aw_base.hxx
• AW_FLOATS : aw_base.hxx
• AW_focusCB() : AW_window.cxx
• AW_font : aw_base.hxx
• AW_font_2_xfig() : AW_xfont.cxx , aw_xfont.hxx
• AW_FONT_GROUP_MAX_GC : aw_font_group.hxx
• AW_FONTINFO_CHAR_ASCII_MAX : aw_common.hxx
• AW_FONTINFO_CHAR_ASCII_MIN : aw_common.hxx
• AW_forget_all_window_geometry() : aw_nawar.hxx , AW_window.cxx
• AW_function : aw_device.hxx
• AW_GAUGE_GRANULARITY : AW_status.cxx
• AW_GAUGE_SIZE : AW_status.cxx
• AW_GCM_AREA : aw_preset.hxx
• AW_GCM_DATA_AREA : aw_preset.hxx
• AW_GCM_WINDOW_AREA : aw_preset.hxx
• AW_get_AreaWidget() : AW_window_Xm_interface.cxx , aw_window_Xm_interface.hxx
• AW_get_color_group_name() : aw_color_groups.hxx , AW_preset.cxx
• AW_get_color_groups_active_awarname() : aw_color_groups.hxx , AW_preset.cxx
• AW_get_common_extends_cb() : AW_device.cxx
• AW_get_drag_gc() : AW_preset.cxx , aw_preset.hxx
• aw_get_font_from_xfig() : aw_xfig.hxx
• AW_get_font_shortname() : AW_xfont.cxx , aw_xfont.hxx
• AW_get_font_specification() : AW_xfont.cxx , aw_xfont.hxx
• AW_get_nameserver_addid() : AW_rename.cxx , AW_rename.hxx
• AW_get_pixmapPath() : AW_button.cxx , aw_window.hxx
• AW_get_selected_fullname() : AW_file.cxx , aw_file.hxx
• AW_get_XtAppContext() : AW_window_Xm_interface.cxx , aw_window_Xm_interface.hxx
• AW_getActiveColorRangeID() : AW_preset.cxx , aw_preset.hxx
• AW_getColorRangeNames() : AW_preset.cxx , aw_preset.hxx
• AW_getFirstRangeGC() : AW_preset.cxx , aw_preset.hxx
• AW_grey_level : aw_base.hxx
• aw_handlers : AW_root.cxx
• AW_HEADER_MAIN : aw_window.hxx
• aw_help_back() : AW_help.cxx
• aw_help_browse() : AW_help.cxx
• aw_help_edit_help() : AW_help.cxx
• AW_help_entry_pressed() : AW_root.cxx , aw_window.hxx
• aw_help_helpfile_changed_cb() : AW_help.cxx
• aw_help_history() : AW_help.cxx
• AW_help_popup() : AW_help.cxx , aw_window.hxx
• aw_help_search() : AW_help.cxx
• aw_help_select_newest_in_history() : AW_help.cxx
• aw_help_show_external_format() : AW_help.cxx
• AW_HELVETICA : aw_device.hxx
• AW_HELVETICA_BOLD : aw_device.hxx
• AW_HELVETICA_BOLD_OBLIQUE : aw_device.hxx
• AW_HELVETICA_NARROW : aw_device.hxx
• AW_HELVETICA_NARROW_BOLD : aw_device.hxx
• AW_HELVETICA_NARROW_BOLD_OBLIQUE : aw_device.hxx
• AW_HELVETICA_NARROW_OBLIQUE : aw_device.hxx
• AW_HELVETICA_OBLIQUE : aw_device.hxx
• AW_HORIZONTAL : aw_window.hxx
• AW_INFO_AREA : aw_base.hxx
• AW_init_color_group_defaults() : aw_color_groups.hxx , AW_preset.cxx
• aw_initstatus() : aw_root.hxx , AW_status.cxx
• AW_INOTIFY_TIMER : AW_inotify.cxx
• aw_input() : AW_modal.cxx , aw_root.hxx
• AW_INPUT_AWAR : AW_modal.cxx
• aw_input_cb_result : AW_modal.cxx
• AW_INPUT_TITLE_AWAR : AW_modal.cxx
• AW_inputCB_draw_area() : AW_window.cxx
• AW_insert_common_property_menu_entries() : AW_preset.cxx , aw_preset.hxx
• aw_insert_default_help_entries() : AW_window.cxx , aw_window_Xm.hxx
• aw_insert_message_in_tmp_message() : AW_status.cxx
• aw_insert_message_in_tmp_message_delayed() : AW_status.cxx
• aw_install_xkeys() : AW_xkey.cxx , aw_xkey.hxx
• AW_INT : aw_device.hxx , aw_base.hxx
• AW_INTS : aw_base.hxx
• AW_is_dir() : AW_file.cxx
• AW_is_file() : AW_file.cxx
• AW_IS_IMAGEREF() : aw_localdef.hxx
• AW_is_link() : AW_file.cxx
• AW_JUSTIFY_LABEL : aw_window_Xm.hxx
• AW_KEEP_POS : aw_window.hxx
• AW_KEEP_SIZE : aw_window.hxx
• AW_KEY_ASCII : aw_keysym.hxx
• AW_KEY_BACKSPACE : aw_keysym.hxx
• AW_key_code : aw_keysym.hxx
• AW_KEY_DELETE : aw_keysym.hxx
• AW_KEY_DOWN : aw_keysym.hxx
• AW_KEY_END : aw_keysym.hxx
• AW_KEY_ESCAPE : aw_keysym.hxx
• AW_KEY_F1 : aw_keysym.hxx
• AW_KEY_F10 : aw_keysym.hxx
• AW_KEY_F11 : aw_keysym.hxx
• AW_KEY_F12 : aw_keysym.hxx
• AW_KEY_F2 : aw_keysym.hxx
• AW_KEY_F3 : aw_keysym.hxx
• AW_KEY_F4 : aw_keysym.hxx
• AW_KEY_F5 : aw_keysym.hxx
• AW_KEY_F6 : aw_keysym.hxx
• AW_KEY_F7 : aw_keysym.hxx
• AW_KEY_F8 : aw_keysym.hxx
• AW_KEY_F9 : aw_keysym.hxx
• AW_KEY_HELP : aw_keysym.hxx
• AW_KEY_HOME : aw_keysym.hxx
• AW_KEY_INSERT : aw_keysym.hxx
• AW_KEY_LEFT : aw_keysym.hxx
• AW_key_mod : aw_keysym.hxx
• AW_KEY_NONE : aw_keysym.hxx
• AW_KEY_PGDN : aw_keysym.hxx
• AW_KEY_PGUP : aw_keysym.hxx
• AW_KEY_RETURN : aw_keysym.hxx
• AW_KEY_RIGHT : aw_keysym.hxx
• AW_KEY_TAB : aw_keysym.hxx
• AW_KEY_UP : aw_keysym.hxx
• AW_Keyboard_Press : aw_window.hxx
• AW_Keyboard_Release : aw_window.hxx
• AW_KEYMODE_ALT : aw_keysym.hxx
• AW_KEYMODE_CONTROL : aw_keysym.hxx
• AW_KEYMODE_NONE : aw_keysym.hxx
• AW_KEYMODE_NUMLOCK : aw_keysym.hxx
• AW_KEYMODE_SHIFT : aw_keysym.hxx
• AW_label : aw_window.hxx
• AW_label_in_awar_list() : AW_window.cxx , aw_window_Xm.hxx
• AW_linestyle : aw_device.hxx
• aw_loop_forget_window_geometry() : AW_window.cxx
• aw_loop_get_window_geometry() : AW_window.cxx
• AW_LUCIDA_SANS : aw_device.hxx
• AW_LUCIDA_SANS_BOLD : aw_device.hxx
• AW_LUCIDA_SANS_BOLD_OBLIQUE : aw_device.hxx
• AW_LUCIDA_SANS_OBLIQUE : aw_device.hxx
• AW_LUCIDA_SANS_TYPEWRITER : aw_device.hxx
• AW_LUCIDA_SANS_TYPEWRITER_BOLD : aw_device.hxx
• AW_manage_GC() : AW_preset.cxx , aw_preset.hxx
• AW_map_AreaGC() : AW_window_Xm_interface.cxx , aw_window_Xm_interface.hxx
• AW_MAX_AREA : aw_base.hxx
• AW_MAX_MENU_DEEP : aw_window_Xm.hxx
• aw_message() : aw_msg.hxx , AW_status.cxx
• aw_message_and_dump_stderr() : AW_root.cxx
• aw_message_cb_result : AW_modal.cxx , aw_window_Xm.hxx
• aw_message_if() : aw_msg.hxx
• AW_MESSAGE_LINES : AW_status.cxx
• AW_MESSAGE_LISTEN_DELAY : aw_window_Xm.hxx
• aw_message_reload() : AW_preset.cxx
• aw_message_save_cb() : AW_status.cxx
• AW_MESSAGE_TIME : aw_window.hxx
• aw_message_timer_listen_event() : AW_modal.cxx , aw_window_Xm.hxx
• AW_MIDDLE_AREA : aw_base.hxx
• aw_modal_file_selection() : AW_modal.cxx , aw_root.hxx
• aw_mode_callback() : AW_window.cxx
• AW_MOTIF_LABEL : aw_window_Xm.hxx
• AW_motionCB() : AW_window.cxx
• AW_Mouse_Drag : aw_window.hxx
• AW_Mouse_Press : aw_window.hxx
• AW_Mouse_Release : aw_window.hxx
• AW_MouseButton : aw_window.hxx
• AW_MSG_UNMAPPED_AWAR : AW_awar.cxx
• AW_NO_COLOR : aw_base.hxx
• AW_NONE : aw_base.hxx
• AW_normal_cursor() : AW_root.cxx , aw_window.hxx
• AW_NUM_FONTS : aw_device.hxx
• AW_NUM_FONTS_XFIG : aw_device.hxx
• AW_NUMBER_OF_F_KEYS : aw_window_Xm.hxx
• aw_onExpose_calc_WM_offsets() : AW_window.cxx
• aw_openstatus() : AW_status.cxx , aw_status.hxx
• AW_openURL() : AW_help.cxx , aw_window.hxx
• AW_orientation : aw_window.hxx
• AW_pixmap : aw_window.hxx
• AW_PLANAR_COLORS : aw_color_groups.hxx
• AW_POINTER : aw_base.hxx
• AW_POPDOWN() : AW_window.cxx , aw_window.hxx
• aw_popup_exit() : AW_question.cxx , aw_question.hxx
• AW_popup_gc_color_groups_window() : AW_preset.cxx
• AW_popup_gc_color_range_window() : AW_preset.cxx , aw_preset.hxx
• AW_popup_namesadmin_window() : AW_names_admin.cxx , AW_rename.hxx
• aw_popup_ok() : AW_question.cxx , aw_question.hxx
• AW_pos : aw_base.hxx
• AW_PosRecalc : aw_window.hxx
• AW_postcb_cb : aw_base.hxx
• AW_preset_create_color_button() : AW_preset.cxx
• AW_preset_create_font_chooser() : AW_preset.cxx
• AW_preset_window() : AW_preset.cxx , aw_preset.hxx
• AW_PRINTER : aw_device.hxx
• AW_PRINTER_CLIP : aw_device.hxx
• AW_PRINTER_EXT : aw_device.hxx
• AW_ProcessEventType : aw_root.hxx
• aw_question() : AW_question.cxx , aw_question.hxx
• AW_RANGE_COLORS : aw_color_groups.hxx
• AW_reactivate_all_advices() : AW_advice.cxx , aw_advice.hxx
• AW_reactivate_all_questions() : AW_question.cxx , aw_question.hxx
• aw_realize_widget() : AW_window.cxx , aw_window_Xm.hxx
• aw_ref_to_title() : AW_help.cxx
• AW_refresh_fileselection() : AW_file.cxx , aw_file.hxx
• aw_refresh_tmp_message_display() : AW_status.cxx
• AW_remove_inotification() : AW_inotify.cxx , aw_inotify.hxx
• AW_RENAME_SKIP_GUI : DBwriter.cxx , GenomeImport.cxx
• AW_REPOS_TO_CENTER : aw_window.hxx
• AW_REPOS_TO_MOUSE : aw_window.hxx
• AW_REPOS_TO_MOUSE_ONCE : aw_window.hxx
• AW_RESIZE_ANY : aw_window.hxx
• AW_RESIZE_DEFAULT : aw_window.hxx
• AW_RESIZE_USER : aw_window.hxx
• AW_resizeCB_draw_area() : AW_window.cxx
• AW_rgb : aw_base.hxx , aw_rgb.hxx
• AW_ROOT_DEFAULT : aw_base.hxx
• aw_root_init_font() : aw_window_Xm.hxx , AW_xfont.cxx
• AW_save_properties() : AW_preset.cxx , aw_preset.hxx
• AW_save_specific_properties() : AW_preset.cxx , aw_preset.hxx
• AW_SCALER_EXP_BORDER : aw_window.hxx
• AW_SCALER_EXP_CENTER : aw_window.hxx
• AW_SCALER_EXP_LOWER : aw_window.hxx
• AW_SCALER_EXP_UPPER : aw_window.hxx
• AW_SCALER_LINEAR : aw_window.hxx
• AW_ScalerType : aw_window.hxx
• AW_SCREEN : aw_device.hxx
• AW_SCREEN_BOLD : aw_device.hxx
• AW_SCREEN_MEDIUM : aw_device.hxx
• AW_SCROLL_MAX : aw_window_Xm.hxx
• AW_select_nameserver() : AW_rename.cxx , AW_rename.hxx
• AW_server_callback() : AW_window.cxx , aw_window_Xm.hxx
• aw_set_color() : AW_preset.cxx
• aw_set_delete_window_cb() : AW_window.cxx
• aw_set_local_message() : aw_root.hxx , AW_status.cxx
• aw_set_rgb_sliders() : AW_preset.cxx
• AW_set_selected_fullname() : AW_file.cxx , aw_file.hxx
• aw_set_sliders_from_color() : AW_preset.cxx
• AW_SIZE : aw_device.hxx
• aw_size_awar_name() : AW_window.cxx
• aw_size_awar_name_buffer : AW_window.cxx
• AW_SIZE_UNSCALED : aw_device.hxx
• AW_SizeRecalc : aw_window.hxx
• AW_SOLID : aw_device.hxx
• AW_SPATIAL_COLORS : aw_color_groups.hxx
• aw_status() : arb_export_sequences.cxx
• AW_STATUS_ABORT : AW_status.cxx
• aw_status_aborted() : AW_status.cxx , aw_status.hxx
• aw_status_check_pipe() : AW_status.cxx
• AW_STATUS_CMD_CLOSE : AW_status.cxx
• AW_STATUS_CMD_GAUGE : AW_status.cxx
• AW_STATUS_CMD_INIT : AW_status.cxx
• AW_STATUS_CMD_MESSAGE : AW_status.cxx
• AW_STATUS_CMD_NEW_TITLE : AW_status.cxx
• AW_STATUS_CMD_OPEN : AW_status.cxx
• AW_STATUS_CMD_TEXT : AW_status.cxx
• aw_status_gauge() : AW_status.cxx , aw_status.hxx
• aw_status_hide() : AW_status.cxx
• AW_STATUS_HIDE_DELAY : AW_status.cxx
• AW_status_impl : AW_root.cxx
• aw_status_kill() : AW_status.cxx
• AW_STATUS_KILL_DELAY : AW_status.cxx
• AW_STATUS_LISTEN_DELAY : AW_status.cxx
• AW_STATUS_OK : AW_status.cxx
• AW_STATUS_PIPE_CHECK_DELAY : AW_status.cxx
• aw_status_read_byte() : AW_status.cxx
• aw_status_read_command() : AW_status.cxx
• aw_status_read_int() : AW_status.cxx
• aw_status_subtitle() : AW_status.cxx , aw_status.hxx
• aw_status_timer_event() : AW_status.cxx
• aw_status_timer_hide_event() : AW_status.cxx
• aw_status_timer_listen_event() : AW_status.cxx
• aw_status_title() : AW_status.cxx , aw_status.hxx
• aw_status_wait_for_open() : AW_status.cxx
• aw_status_write() : AW_status.cxx
• AW_STD_COLOR_IDX_MAX : aw_base.hxx
• aw_stg : AW_status.cxx
• AW_STRING : aw_base.hxx
• AW_TERMINAL_BOLD : aw_device.hxx
• AW_TERMINAL_MEDIUM : aw_device.hxx
• AW_test_nameserver() : AW_rename.hxx , AW_rename.cxx
• AW_timer_callback() : AW_root.cxx
• AW_timer_callback_never_disabled() : AW_root.cxx
• AW_TIMES : aw_device.hxx
• AW_TIMES_BOLD : aw_device.hxx
• AW_TIMES_BOLD_ITALIC : aw_device.hxx
• AW_TIMES_ITALIC : aw_device.hxx
• AW_TRACK : aw_device.hxx
• AW_TYPE_MAX : aw_base.hxx
• AW_unfold_path() : AW_file.cxx , aw_file.hxx
• aw_uninstall_xkeys() : aw_xkey.hxx , AW_xkey.cxx
• aw_update_all_window_geometry_awars() : aw_nawar.hxx , AW_window.cxx
• aw_update_window_geometry_awars() : AW_window.cxx
• AW_value_changed_callback() : AW_button.cxx
• AW_var_gbdata_callback() : AW_awar.cxx
• AW_var_gbdata_callback_delete() : AW_awar.cxx
• AW_var_gbdata_callback_delete_intern() : AW_awar.cxx
• AW_VARIABLE_TYPE : aw_base.hxx
• AW_variable_update_callback() : AW_button.cxx , aw_varupdate.hxx
• AW_VERTICAL : aw_window.hxx
• AW_WHEEL_DOWN : aw_window.hxx
• AW_WHEEL_UP : aw_window.hxx
• AW_WIDGET_CHOICE_MENU : aw_awar.hxx
• AW_WIDGET_INPUT_FIELD : aw_awar.hxx
• AW_WIDGET_LABEL_FIELD : aw_awar.hxx
• AW_WIDGET_SCALER : aw_awar.hxx
• AW_WIDGET_SELECTION_LIST : aw_awar.hxx
• AW_WIDGET_TEXT_FIELD : aw_awar.hxx
• AW_WIDGET_TOGGLE : aw_awar.hxx
• AW_WIDGET_TOGGLE_FIELD : aw_awar.hxx
• AW_widget_type : aw_awar.hxx
• aw_window_avoid_destroy_cb() : AW_window.cxx
• AW_WINDOW_BG : aw_base.hxx
• AW_WINDOW_C1 : aw_base.hxx
• AW_WINDOW_C2 : aw_base.hxx
• AW_WINDOW_C3 : aw_base.hxx
• aw_window_destroy_cb() : AW_window.cxx
• AW_WINDOW_DRAG : aw_base.hxx
• AW_WINDOW_FG : aw_base.hxx
• aw_window_noexit_destroy_cb() : AW_window.cxx
• aw_xfig_hash_free_loop() : AW_xfig.cxx
• AW_xfigCB_info_area() : AW_window.cxx
• aw_xkey_2_awkey() : AW_xkey.cxx , aw_xkey.hxx
• AW_XOR : aw_device.hxx
• AWAR_3D_23S_RRNA_MOL : RNA3D_Global.hxx
• AWAR_3D_BASES_HELIX : RNA3D_Global.hxx
• AWAR_3D_BASES_MODE : RNA3D_Global.hxx
• AWAR_3D_BASES_NON_HELIX : RNA3D_Global.hxx
• AWAR_3D_BASES_UNPAIRED_HELIX : RNA3D_Global.hxx
• AWAR_3D_CURSOR_POSITION : RNA3D_Global.hxx
• AWAR_3D_DISPLAY_BASES : RNA3D_Global.hxx
• AWAR_3D_DISPLAY_HELIX : RNA3D_Global.hxx
• AWAR_3D_DISPLAY_MASK : RNA3D_Global.hxx
• AWAR_3D_DISPLAY_SIZE : RNA3D_Global.hxx
• AWAR_3D_DISPLAY_TERTIARY_INTRACTIONS : RNA3D_Global.hxx
• AWAR_3D_HELIX_BACKBONE : RNA3D_Global.hxx
• AWAR_3D_HELIX_FROM : RNA3D_Global.hxx
• AWAR_3D_HELIX_MIDPOINT : RNA3D_Global.hxx
• AWAR_3D_HELIX_NUMBER : RNA3D_Global.hxx
• AWAR_3D_HELIX_SIZE : RNA3D_Global.hxx
• AWAR_3D_HELIX_TO : RNA3D_Global.hxx
• AWAR_3D_MAP_ENABLE : RNA3D_Global.hxx
• AWAR_3D_MAP_SAI : RNA3D_Global.hxx
• AWAR_3D_MAP_SEARCH_STRINGS : RNA3D_Global.hxx
• AWAR_3D_MAP_SPECIES : RNA3D_Global.hxx
• AWAR_3D_MAP_SPECIES_DISP_BASE : RNA3D_Global.hxx
• AWAR_3D_MAP_SPECIES_DISP_DELETIONS : RNA3D_Global.hxx
• AWAR_3D_MAP_SPECIES_DISP_INSERTIONS : RNA3D_Global.hxx
• AWAR_3D_MAP_SPECIES_DISP_INSERTIONS_INFO : RNA3D_Global.hxx
• AWAR_3D_MAP_SPECIES_DISP_MISSING : RNA3D_Global.hxx
• AWAR_3D_MAP_SPECIES_DISP_POS : RNA3D_Global.hxx
• AWAR_3D_MOL_BACKBONE : RNA3D_Global.hxx
• AWAR_3D_MOL_COLORIZE : RNA3D_Global.hxx
• AWAR_3D_MOL_DISP_POS : RNA3D_Global.hxx
• AWAR_3D_MOL_POS_INTERVAL : RNA3D_Global.hxx
• AWAR_3D_MOL_ROTATE : RNA3D_Global.hxx
• AWAR_3D_MOL_SIZE : RNA3D_Global.hxx
• AWAR_3D_SAI_SELECTED : RNA3D_Global.hxx
• AWAR_3D_SELECTED_SPECIES : RNA3D_Global.hxx
• AWAR_3D_SHAPES_HELIX : RNA3D_Global.hxx
• AWAR_3D_SHAPES_NON_HELIX : RNA3D_Global.hxx
• AWAR_3D_SHAPES_UNPAIRED_HELIX : RNA3D_Global.hxx
• AWAR_ACI : field_shader.cxx
• AWAR_ADDID_DST : MG_names.cxx
• AWAR_ADDID_MATCH : MG_names.cxx
• AWAR_ADDID_SRC : MG_names.cxx
• AWAR_ADVICE_DISABLED : AW_advice.cxx
• AWAR_ADVICE_SHOWN : AW_advice.cxx
• AWAR_ADVICE_TEXT : AW_advice.cxx
• AWAR_ADVICE_TMP : AW_advice.cxx
• AWAR_ADVICE_UNDERSTOOD : AW_advice.cxx
• AWAR_ALIGNMENT : ap_main.hxx
• AWAR_ALLOW_DUPS : MG_names.cxx
• AWAR_APPEND : MG_species.cxx
• AWAR_APRINT : awt_asciiprint.hxx
• AWAR_APRINT_DX : awt_asciiprint.hxx
• AWAR_APRINT_DY : awt_asciiprint.hxx
• AWAR_APRINT_FILE : awt_asciiprint.hxx
• AWAR_APRINT_MAGNIFICATION : awt_asciiprint.hxx
• AWAR_APRINT_ORIENTATION : awt_asciiprint.hxx
• AWAR_APRINT_PAGES : awt_asciiprint.hxx
• AWAR_APRINT_PAPER_SIZE : awt_asciiprint.hxx
• AWAR_APRINT_PRINTER : awt_asciiprint.hxx
• AWAR_APRINT_PRINTTO : awt_asciiprint.hxx
• AWAR_APRINT_SX : awt_asciiprint.hxx
• AWAR_APRINT_SY : awt_asciiprint.hxx
• AWAR_APRINT_TEXT : awt_asciiprint.hxx
• AWAR_APRINT_TITLE : awt_asciiprint.hxx
• AWAR_ARB_TREE_RENAMED : aw_global_awars.hxx
• AWAR_AW_FOCUS_FOLLOWS_MOUSE : aw_global_awars.hxx
• AWAR_AW_FOCUS_FOLLOWS_MOUSE_changed_cb() : AW_global_awars.cxx
• AWAR_AWM_MASK : aw_awar_defs.hxx
• AWAR_AWM_MASK_changed_cb() : AW_global_awars.cxx
• AWAR_BA_AUTOMARK_FORMAT : NT_branchAnalysis.cxx
• AWAR_BA_DEGENERATION : NT_branchAnalysis.cxx
• AWAR_BA_MIN_ABS_DIFF : NT_branchAnalysis.cxx
• AWAR_BA_MIN_DEPTH : NT_branchAnalysis.cxx
• AWAR_BA_MIN_REL_DIFF : NT_branchAnalysis.cxx
• AWAR_BA_MIN_ROOTDIST : NT_branchAnalysis.cxx
• AWAR_BADALI_BASE : ED4_detect_bad_ali.cxx
• AWAR_BADALI_FIELD : ED4_detect_bad_ali.cxx
• AWAR_BADALI_HELIXLIST : ED4_detect_bad_ali.cxx
• AWAR_BADALI_SPECIES : ED4_detect_bad_ali.cxx
• AWAR_BADALI_SYMBOLS : ED4_detect_bad_ali.cxx
• AWAR_BADALI_TEMP : ED4_detect_bad_ali.cxx
• AWAR_BEST_PARSIMONY : ap_main.hxx
• AWAR_BRANCH_ANALYSIS : NT_branchAnalysis.cxx
• AWAR_BRANCH_ANALYSIS_TMP : NT_branchAnalysis.cxx
• AWAR_CANIO : AWT_canio.cxx
• AWAR_CANIO_BORDERSIZE : AWT_canio.cxx
• AWAR_CANIO_CLIP : AWT_canio.cxx
• AWAR_CANIO_COLOR : AWT_canio.cxx
• AWAR_CANIO_DEST : AWT_canio.cxx
• AWAR_CANIO_F2DBUG : AWT_canio.cxx
• AWAR_CANIO_FILE_BASE : AWT_canio.cxx
• AWAR_CANIO_FILE_DIR : AWT_canio.cxx
• AWAR_CANIO_FILE_FILTER : AWT_canio.cxx
• AWAR_CANIO_FILE_NAME : AWT_canio.cxx
• AWAR_CANIO_GFX_SX : AWT_canio.cxx
• AWAR_CANIO_GFX_SY : AWT_canio.cxx
• AWAR_CANIO_HANDLES : AWT_canio.cxx
• AWAR_CANIO_LANDSCAPE : AWT_canio.cxx
• AWAR_CANIO_MAGNIFICATION : AWT_canio.cxx
• AWAR_CANIO_OUT_SX : AWT_canio.cxx
• AWAR_CANIO_OUT_SY : AWT_canio.cxx
• AWAR_CANIO_OVERLAP : AWT_canio.cxx
• AWAR_CANIO_OVERLAP_PERCENT : AWT_canio.cxx
• AWAR_CANIO_OVERLAP_WANTED : AWT_canio.cxx
• AWAR_CANIO_PAGE_SX : AWT_canio.cxx
• AWAR_CANIO_PAGE_SY : AWT_canio.cxx
• AWAR_CANIO_PAGELOCK : AWT_canio.cxx
• AWAR_CANIO_PAGES : AWT_canio.cxx
• AWAR_CANIO_PAPER : AWT_canio.cxx
• AWAR_CANIO_PAPER_SX : AWT_canio.cxx
• AWAR_CANIO_PAPER_SY : AWT_canio.cxx
• AWAR_CANIO_PAPER_USABLE : AWT_canio.cxx
• AWAR_CANIO_PRINTER : AWT_canio.cxx
• AWAR_CANIO_TMP : AWT_canio.cxx
• AWAR_CHANGE_DUMP : AW_awar.cxx
• awar_changed_cb() : AWT_input_mask.cxx
• AWAR_CHECK : MG_checkfield.cxx
• AWAR_CL_DISPLAY_CONFIG_MARKERS : NT_edconf.cxx
• AWAR_CL_SELECTED_CONFIGS : NT_edconf.cxx
• AWAR_CLUSTER_AUTOMARK : DI_clusters.cxx
• AWAR_CLUSTER_GROUP_EXAMPLE : DI_clusters.cxx
• AWAR_CLUSTER_GROUP_EXISTING : DI_clusters.cxx
• AWAR_CLUSTER_GROUP_IDENTITY : DI_clusters.cxx
• AWAR_CLUSTER_GROUP_NOTFOUND : DI_clusters.cxx
• AWAR_CLUSTER_GROUP_PARTSEP : DI_clusters.cxx
• AWAR_CLUSTER_GROUP_PREFIX : DI_clusters.cxx
• AWAR_CLUSTER_GROUP_PREFIX_MATCH : DI_clusters.cxx
• AWAR_CLUSTER_GROUP_SUFFIX : DI_clusters.cxx
• AWAR_CLUSTER_GROUP_WHAT : DI_clusters.cxx
• AWAR_CLUSTER_GRP_PREFIX : DI_clusters.cxx
• AWAR_CLUSTER_GRP_PREFIX_TMP : DI_clusters.cxx
• AWAR_CLUSTER_MARKREP : DI_clusters.cxx
• AWAR_CLUSTER_MAXDIST : DI_clusters.cxx
• AWAR_CLUSTER_MINSIZE : DI_clusters.cxx
• AWAR_CLUSTER_ORDER : DI_clusters.cxx
• AWAR_CLUSTER_PREFIX : DI_clusters.cxx
• AWAR_CLUSTER_PREFIX_TEMP : DI_clusters.cxx
• AWAR_CLUSTER_RESTORE_LABEL : DI_clusters.cxx
• AWAR_CLUSTER_SELECTED : DI_clusters.cxx
• AWAR_CLUSTER_SELECTREP : DI_clusters.cxx
• AWAR_COLOR_GROUPS_PREFIX : AW_preset.cxx
• AWAR_COLOR_GROUPS_USE : AW_preset.cxx
• AWAR_COLOR_LOADSAVE_NAME : db_query.cxx
• AWAR_COLORIZE : db_query.cxx
• AWAR_COLUMNSTAT_BASE : PARS_main.cxx
• AWAR_COLUMNSTAT_NAME : PARS_main.cxx
• AWAR_COMBINED_EXPERIMENT_NAME : EXP_local.hxx
• AWAR_COMBINED_GENE_NAME : GEN_local.hxx
• AWAR_COMPARE_FIELD : MG_checkfield.cxx
• AWAR_CON_ALIGNMENT_SEPARATOR : NT_concatenate.cxx
• AWAR_CON_ALLOW_OVERWRITE_ALI : NT_concatenate.cxx
• AWAR_CON_INSGAPS_FOR_MISS_ALIS : NT_concatenate.cxx
• AWAR_CON_MERGE_FIELD : NT_concatenate.cxx
• AWAR_CON_NEW_ALIGNMENT_NAME : NT_concatenate.cxx
• AWAR_CON_SELECTED_ALI : NT_concatenate.cxx
• AWAR_CON_SEQUENCE_TYPE : NT_concatenate.cxx
• AWAR_CON_STORE_SIM_SP_NO : NT_concatenate.cxx
• AWAR_CONFIG_COMMENT : NT_edconf.cxx
• AWAR_CONFIG_NAME : MG_configs.cxx
• AWAR_CONFIG_NAME_DST : MG_configs.cxx
• AWAR_CONFIG_NAME_SRC : MG_configs.cxx
• AWAR_CONFIGURATION : aw_awar_defs.hxx
• AWAR_CONSENSUS_ALIGNMENT : AP_consensus.cxx
• AWAR_CONSENSUS_CONSIDBOUND : AP_consensus.cxx
• AWAR_CONSENSUS_COUNTGAPS : AP_consensus.cxx
• AWAR_CONSENSUS_GAPBOUND : AP_consensus.cxx
• AWAR_CONSENSUS_GROUP : AP_consensus.cxx
• AWAR_CONSENSUS_LOWER : AP_consensus.cxx
• AWAR_CONSENSUS_MARKED_ONLY : AP_consensus.cxx
• AWAR_CONSENSUS_NAME : AP_consensus.cxx
• AWAR_CONSENSUS_PREFIX : AP_consensus.cxx
• AWAR_CONSENSUS_PREFIX_TMP : AP_consensus.cxx
• AWAR_CONSENSUS_UPPER : AP_consensus.cxx
• AWAR_CORRECT : MG_checkfield.cxx
• AWAR_CS2GP : ColumnStat_2_gnuplot.cxx
• AWAR_CS2GP_DIRECTORY : ColumnStat_2_gnuplot.cxx
• AWAR_CS2GP_FILENAME : ColumnStat_2_gnuplot.cxx
• AWAR_CS2GP_FILTER_NAME : ColumnStat_2_gnuplot.cxx
• AWAR_CS2GP_GNUPLOT_OVERLAY_POSTFIX : ColumnStat_2_gnuplot.cxx
• AWAR_CS2GP_GNUPLOT_OVERLAY_PREFIX : ColumnStat_2_gnuplot.cxx
• AWAR_CS2GP_NAME : ColumnStat_2_gnuplot.cxx
• AWAR_CS2GP_SMOOTH_GNUPLOT : ColumnStat_2_gnuplot.cxx
• AWAR_CS2GP_SMOOTH_VALUES : ColumnStat_2_gnuplot.cxx
• AWAR_CS2GP_SUFFIX : ColumnStat_2_gnuplot.cxx
• AWAR_CURSOR_POSITION : aw_awar_defs.hxx
• AWAR_CURSOR_POSITION_LOCAL : aw_awar_defs.hxx
• AWAR_CV_B : AW_preset.cxx
• AWAR_CV_G : AW_preset.cxx
• AWAR_CV_H : AW_preset.cxx
• AWAR_CV_R : AW_preset.cxx
• AWAR_CV_S : AW_preset.cxx
• AWAR_CV_V : AW_preset.cxx
• AWAR_DB_COMMENT : aw_awar_defs.hxx
• AWAR_DB_COMPRESSION : NT_extern.cxx
• AWAR_DB_DIRECTORY : NT_main.cxx
• AWAR_DB_DST : merge.hxx
• AWAR_DB_FILTER : NT_main.cxx
• AWAR_DB_NAME : aw_awar_defs.hxx
• AWAR_DB_OPTI_TREENAME : NT_extern.cxx
• AWAR_DB_PATH : aw_awar_defs.hxx
• AWAR_DB_PATH_changed_cb() : NT_main.cxx
• AWAR_DB_SRC : merge.hxx
• AWAR_DB_TYPE : NT_extern.cxx
• AWAR_DBBASE : aw_awar_defs.hxx
• AWAR_DEFAULT_ALIGNMENT : aw_awar_defs.hxx
• AWAR_DIFF_GAPTYPES : ED4_seq_colors.cxx
• AWAR_DIFF_MINDCASE : ED4_seq_colors.cxx
• AWAR_DIFF_MINDGAPTYPE : ED4_seq_colors.cxx
• AWAR_DIFF_NAME : ED4_seq_colors.cxx
• AWAR_DIFF_TYPE : ED4_seq_colors.cxx
• AWAR_DIM_ACTIVE : field_shader.cxx
• AWAR_DIST_ALIGNMENT : di_awars.hxx
• AWAR_DIST_BOOTSTRAP_COUNT : DI_matr.cxx
• AWAR_DIST_CANCEL_CHARS : DI_matr.cxx
• AWAR_DIST_COLUMN_STAT_NAME : DI_matr.cxx
• AWAR_DIST_COLUMN_STAT_PREFIX : di_awars.hxx
• AWAR_DIST_CORR_TRANS : di_matr.hxx
• AWAR_DIST_DIST_PREFIX : di_matr.hxx
• AWAR_DIST_FILTER_ALIGNMENT : di_awars.hxx
• AWAR_DIST_FILTER_FILTER : di_awars.hxx
• AWAR_DIST_FILTER_NAME : di_awars.hxx
• AWAR_DIST_FILTER_PREFIX : di_awars.hxx
• AWAR_DIST_FILTER_SIMPLIFY : di_awars.hxx
• AWAR_DIST_MATRIX_AUTO_CALC_TREE : DI_matr.cxx
• AWAR_DIST_MATRIX_AUTO_RECALC : DI_matr.cxx
• AWAR_DIST_MATRIX_DNA_BASE : di_awars.hxx
• AWAR_DIST_MATRIX_DNA_ENABLED : di_awars.hxx
• AWAR_DIST_MAX_DIST : di_matr.hxx
• AWAR_DIST_MIN_DIST : di_matr.hxx
• AWAR_DIST_PREFIX : di_awars.hxx , di_matr.hxx
• AWAR_DIST_SAVE_MATRIX_BASE : di_matr.hxx
• AWAR_DIST_SAVE_MATRIX_FILENAME : DI_matr.cxx
• AWAR_DIST_SAVE_MATRIX_TYPE : DI_matr.cxx
• AWAR_DIST_TREE_COMP_NAME : DI_matr.cxx
• AWAR_DIST_TREE_CURR_NAME : di_awars.hxx
• AWAR_DIST_TREE_PREFIX : di_awars.hxx
• AWAR_DIST_TREE_SORT_NAME : DI_matr.cxx
• AWAR_DIST_TREE_STD_NAME : DI_matr.cxx
• AWAR_DIST_WHICH_SPECIES : di_awars.hxx
• AWAR_DOT_BASE : ED4_dots.cxx
• AWAR_DOT_MARKED : ED4_dots.cxx
• AWAR_DOT_SAI : ED4_dots.cxx
• AWAR_DOT_SAI_CHARS : ED4_dots.cxx
• AWAR_DTREE_ATTACH_GROUP : TreeDisplay.hxx
• AWAR_DTREE_ATTACH_LEN : TreeDisplay.hxx
• AWAR_DTREE_ATTACH_SIZE : TreeDisplay.hxx
• AWAR_DTREE_AUTO_JUMP : TreeDisplay.hxx
• AWAR_DTREE_AUTO_JUMP_TREE : TreeDisplay.hxx
• AWAR_DTREE_AUTO_UNFOLD : TreeDisplay.hxx
• AWAR_DTREE_BASELINEWIDTH : TreeDisplay.hxx
• AWAR_DTREE_BOOTSTRAP_MAX : TreeDisplay.hxx
• AWAR_DTREE_BOOTSTRAP_MIN : TreeDisplay.hxx
• AWAR_DTREE_BOOTSTRAP_SHOW : TreeDisplay.hxx
• AWAR_DTREE_BOOTSTRAP_STYLE : TreeDisplay.hxx
• AWAR_DTREE_BRANCH_STYLE : TreeDisplay.hxx
• AWAR_DTREE_CIRCLE_ELLIPSE : TreeDisplay.hxx
• AWAR_DTREE_CIRCLE_FILL : TreeDisplay.hxx
• AWAR_DTREE_CIRCLE_LIMIT : TreeDisplay.hxx
• AWAR_DTREE_CIRCLE_SHOW : TreeDisplay.hxx
• AWAR_DTREE_CIRCLE_ZOOM : TreeDisplay.hxx
• AWAR_DTREE_DENDRO_XPAD : TreeDisplay.hxx
• AWAR_DTREE_DENDRO_ZOOM_TEXT : TreeDisplay.hxx
• AWAR_DTREE_GREY_LEVEL : TreeDisplay.hxx
• AWAR_DTREE_GROUP_DOWNSCALE : TreeDisplay.hxx
• AWAR_DTREE_GROUP_MARKED_THRESHOLD : TreeDisplay.hxx
• AWAR_DTREE_GROUP_ORIENT : TreeDisplay.hxx
• AWAR_DTREE_GROUP_PARTIALLY_MARKED_THRESHOLD : TreeDisplay.hxx
• AWAR_DTREE_GROUP_SCALE : TreeDisplay.hxx
• AWAR_DTREE_GROUP_STYLE : TreeDisplay.hxx
• AWAR_DTREE_GROUPCOUNTMODE : TreeDisplay.hxx
• AWAR_DTREE_GROUPINFOPOS : TreeDisplay.hxx
• AWAR_DTREE_MARKER_WIDTH : TreeDisplay.hxx
• AWAR_DTREE_PARTIAL_GREYLEVEL : TreeDisplay.hxx
• AWAR_DTREE_RADIAL_XPAD : TreeDisplay.hxx
• AWAR_DTREE_RADIAL_ZOOM_TEXT : TreeDisplay.hxx
• AWAR_DTREE_SHOW_BRACKETS : TreeDisplay.hxx
• AWAR_DTREE_VERICAL_DIST : TreeDisplay.hxx
• AWAR_DUP_EXCLUDED_WORDS : NT_group_search.cxx
• AWAR_DUP_IGNORE_CASE : NT_group_search.cxx
• AWAR_DUP_MIN_CLUSTER_SIZE : NT_group_search.cxx
• AWAR_DUP_MIN_WORDS : NT_group_search.cxx
• AWAR_DUP_NAME_MATCH : NT_group_search.cxx
• AWAR_DUP_TREE_MODE : NT_group_search.cxx
• AWAR_DUP_WORD_SEPARATORS : NT_group_search.cxx
• AWAR_DUPLICATE_MODE : NT_group_search.cxx
• AWAR_EDIT_BASE_POSITION : ed4_defs.hxx
• AWAR_EDIT_CONFIGURATION : ed4_defs.hxx
• AWAR_EDIT_ECOLI_POSITION : ed4_defs.hxx
• AWAR_EDIT_HELIX_SPACING : ed4_defs.hxx
• AWAR_EDIT_HELIXNR : ed4_defs.hxx
• AWAR_EDIT_IUPAC : ed4_defs.hxx
• awar_edit_mode : ed4_defs.hxx , ED4_main.cxx
• AWAR_EDIT_MODE : ed4_defs.hxx
• awar_edit_rightward : ed4_defs.hxx , ED4_main.cxx
• AWAR_EDIT_RIGHTWARD : ed4_extern.hxx
• AWAR_EDIT_SECURITY_LEVEL : ed4_defs.hxx
• AWAR_EDIT_SECURITY_LEVEL_ALIGN : ed4_defs.hxx
• AWAR_EDIT_SECURITY_LEVEL_CHANGE : ed4_defs.hxx
• AWAR_EDIT_SEQ_POSITION : ed4_defs.hxx
• AWAR_EDIT_TERMINAL_SPACING : ed4_defs.hxx
• AWAR_EDIT_TITLE_MODE : ed4_defs.hxx
• AWAR_EPS : AW_awar.cxx
• AWAR_ERROR_MESSAGES : aw_awar_defs.hxx
• AWAR_ETAG : MG_checkfield.cxx
• AWAR_EX_NAME : MG_extendeds.cxx
• AWAR_EX_NAME_DST : MG_extendeds.cxx
• AWAR_EX_NAME_SRC : MG_extendeds.cxx
• AWAR_EXCLUDE : MG_checkfield.cxx
• AWAR_EXPERIMENT_NAME : EXP.hxx
• AWAR_EXPERT : aw_awar_defs.hxx
• AWAR_EXPORT_COMPRESS : awti_exp_local.hxx
• AWAR_EXPORT_CUTSTOP : awti_exp_local.hxx
• AWAR_EXPORT_FILEBASE : awti_exp_local.hxx
• AWAR_EXPORT_FILENAME : awti_exp_local.hxx
• AWAR_EXPORT_FILESUFFIX : awti_exp_local.hxx
• AWAR_EXPORT_FILTER_NAME : awti_exp_local.hxx
• AWAR_EXPORT_FORMAT_DESC : awti_exp_local.hxx
• AWAR_EXPORT_FORMATBASE : awti_exp_local.hxx
• AWAR_EXPORT_FORMATNAME : awti_exp_local.hxx
• AWAR_EXPORT_FTS : awti_exp_local.hxx
• AWAR_EXPORT_MARKED : awti_exp_local.hxx
• AWAR_EXPORT_MULTIPLE_FILES : awti_exp_local.hxx
• AWAR_EXPORT_NDS : NT_extern.cxx
• AWAR_EXPORT_NDS_SEPARATOR : NT_extern.cxx
• AWAR_FIELD : field_shader.cxx
• AWAR_FIELD_CHOSEN : ed4_defs.hxx
• AWAR_FIELD_CONVERT_SOURCE_TMPL : ui_species.cxx
• AWAR_FIELD_CONVERT_TYPE_TMPL : ui_species.cxx
• AWAR_FIELD_CREATE_NAME_TMPL : ui_species.cxx
• AWAR_FIELD_CREATE_TYPE_TMPL : ui_species.cxx
• AWAR_FIELD_DELETE_TMPL : ui_species.cxx
• AWAR_FIELD_DST : MG_species.cxx
• AWAR_FIELD_REORDER_DEST_TMPL : ui_species.cxx
• AWAR_FIELD_REORDER_ORDER : ui_species.cxx
• AWAR_FIELD_REORDER_SOURCE_TMPL : ui_species.cxx
• AWAR_FIELD_SRC : MG_species.cxx
• AWAR_FILTER_NAME : ap_main.hxx
• AWAR_FLAG_ENABLE_TEMPLATE : ED4_flags.cxx
• AWAR_FLAG_FIELD_TEMPLATE : ED4_flags.cxx
• AWAR_FLAG_HEADER_TEMPLATE : ED4_flags.cxx
• AWAR_FLAG_PREFIX_TEMPLATE : ED4_flags.cxx
• AWAR_FLAGS_ENABLED : ED4_flags.cxx
• AWAR_FLAGS_PREFIX : ED4_flags.cxx
• AWAR_FOOTER : aw_awar_defs.hxx
• AWAR_FOOTER_MAX_LEN : aw_awar_defs.hxx
• AWAR_GDE_ALIGNMENT : GDE.cxx
• AWAR_GDE_COMPRESSION : GDE_awars.h
• AWAR_GDE_CUTOFF_STOPCODON : GDE_awars.h
• AWAR_GDE_EXPORT_FILTER : aw_awar_defs.hxx
• AWAR_GDE_FILTER : aw_awar_defs.hxx
• AWAR_GDE_FILTER_NAME : GDE.cxx
• AWAR_GDE_SPECIES : GDE_awars.h
• AWAR_GENE_CONTENT : aw_awar_defs.hxx
• AWAR_GENE_DEST : GEN_interface.cxx
• AWAR_GENE_NAME : GEN.hxx
• AWAR_GENMAP_ARROW_SIZE : GEN_local.hxx
• AWAR_GENMAP_AUTO_JUMP : GEN_local.hxx
• AWAR_GENMAP_BOOK_BASES_PER_LINE : GEN_local.hxx
• AWAR_GENMAP_BOOK_LINE_HEIGHT : GEN_local.hxx
• AWAR_GENMAP_BOOK_LINE_SPACE : GEN_local.hxx
• AWAR_GENMAP_BOOK_WIDTH_FACTOR : GEN_local.hxx
• AWAR_GENMAP_DISPLAY_TYPE : GEN_local.hxx
• AWAR_GENMAP_RADIAL_INSIDE : GEN_local.hxx
• AWAR_GENMAP_RADIAL_OUTSIDE : GEN_local.hxx
• AWAR_GENMAP_SHOW_ALL_NDS : GEN_local.hxx
• AWAR_GENMAP_SHOW_HIDDEN : GEN_local.hxx
• AWAR_GENMAP_VERTICAL_FACTOR_X : GEN_local.hxx
• AWAR_GENMAP_VERTICAL_FACTOR_Y : GEN_local.hxx
• AWAR_GROUP : ad_trees.h
• AWAR_GROUP_HIT_COUNT : NT_group_search.cxx
• AWAR_GROUPXFER_ACI : ad_trees.cxx
• AWAR_GROUPXFER_INGROUP_ABS : ad_trees.cxx
• AWAR_GROUPXFER_INGROUP_LIM : ad_trees.cxx
• AWAR_GROUPXFER_INGROUP_REL : ad_trees.cxx
• AWAR_GROUPXFER_KEELING : ad_trees.cxx
• AWAR_GROUPXFER_OUTGROUP_ABS : ad_trees.cxx
• AWAR_GROUPXFER_OUTGROUP_LIM : ad_trees.cxx
• AWAR_GROUPXFER_OUTGROUP_REL : ad_trees.cxx
• AWAR_GROUPXFER_OVERWRITE_MODE : ad_trees.cxx
• AWAR_GROUPXFER_SAV : ad_trees.cxx
• AWAR_GROUPXFER_SOURCE : ad_trees.cxx
• AWAR_GROUPXFER_UNKNOWN_ABS : ad_trees.cxx
• AWAR_GUI_OVERLAY_GROUPS : item_shader.cxx
• AWAR_GUI_OVERLAY_MARKED : item_shader.cxx
• AWAR_GUI_PHASE_ALTER : item_shader.cxx
• AWAR_GUI_PHASE_FREQ : item_shader.cxx
• AWAR_GUI_PHASE_POSTSHIFT : item_shader.cxx
• AWAR_GUI_PHASE_PRESHIFT : item_shader.cxx
• AWAR_GUI_RANGE : item_shader.cxx
• AWAR_HELIX_ENABLE : AW_helix.cxx
• AWAR_HELIX_NAME : aw_awar_defs.hxx
• AWAR_HELIX_REFRESH : AW_helix.cxx
• AWAR_HELP : AW_help.cxx
• AWAR_HELPFILE : AW_help.cxx
• AWAR_HELPSEARCH : AW_help.cxx
• AWAR_HELPTEXT : AW_help.cxx
• AWAR_IMPORT_ALI : awti_imp_local.hxx
• AWAR_IMPORT_ALI_PROTECTION : awti_imp_local.hxx
• AWAR_IMPORT_ALI_TYPE : awti_imp_local.hxx
• AWAR_IMPORT_AUTOCONF : awti_import.hxx
• AWAR_IMPORT_FILEBASE : awti_imp_local.hxx
• AWAR_IMPORT_FILENAME : awti_imp_local.hxx
• AWAR_IMPORT_FORMAT_DESC : awti_imp_local.hxx
• AWAR_IMPORT_FORMATBASE : awti_imp_local.hxx
• AWAR_IMPORT_FORMATDIR : awti_imp_local.hxx
• AWAR_IMPORT_FORMATFILTER : awti_imp_local.hxx
• AWAR_IMPORT_FORMATNAME : awti_imp_local.hxx
• AWAR_IMPORT_FTS : awti_imp_local.hxx
• AWAR_IMPORT_GENOM_DB : awti_import.hxx
• AWAR_IMPORT_PREFIX : awti_import.hxx
• AWAR_IMPORT_TMP_PREFIX : awti_import.hxx
• AWAR_INFO_BUTTON_TEXT : aw_awar_defs.hxx
• AWAR_INPUT_INITIALS : NT_validManual.cxx
• AWAR_INPUT_MASK_BASE : AWT_input_mask.cxx
• AWAR_INPUT_MASK_HIDDEN : AWT_input_mask.cxx
• AWAR_INPUT_MASK_ITEM : AWT_input_mask.cxx
• AWAR_INPUT_MASK_NAME : AWT_input_mask.cxx
• AWAR_INPUT_MASK_SCOPE : AWT_input_mask.cxx
• AWAR_INPUT_MASKS_EDIT_ENABLED : AWT_input_mask.cxx
• AWAR_INSDEL : NT_ins_col.cxx
• AWAR_INSDEL_AFFECTED : NT_ins_col.cxx
• AWAR_INSDEL_AMOUNT : NT_ins_col.cxx
• AWAR_INSDEL_CONTAINS : NT_ins_col.cxx
• AWAR_INSDEL_DELETABLE : NT_ins_col.cxx
• AWAR_INSDEL_DIRECTION : NT_ins_col.cxx
• AWAR_INSDEL_RANGE : NT_ins_col.cxx
• AWAR_INSDEL_SAI : NT_ins_col.cxx
• AWAR_INSDEL_SAI_CHARS : NT_ins_col.cxx
• AWAR_INSDEL_WHAT : NT_ins_col.cxx
• AWAR_INSERT_MODE : ed4_defs.hxx
• AWAR_ITARGET_STRING : probe_design.cxx
• AWAR_KEYMAPPING_ENABLE : AWT_map_key.cxx
• AWAR_KL_DYNAMIC_ENABLED : pars_awars.h
• AWAR_KL_DYNAMIC_MAXX : pars_awars.h
• AWAR_KL_DYNAMIC_MAXY : pars_awars.h
• AWAR_KL_DYNAMIC_START : pars_awars.h
• AWAR_KL_FUNCTION_TYPE : pars_awars.h
• AWAR_KL_INCDEPTH : pars_awars.h
• AWAR_KL_MAXDEPTH : pars_awars.h
• AWAR_KL_STATIC_DEPTH1 : pars_awars.h
• AWAR_KL_STATIC_DEPTH2 : pars_awars.h
• AWAR_KL_STATIC_DEPTH3 : pars_awars.h
• AWAR_KL_STATIC_DEPTH4 : pars_awars.h
• AWAR_KL_STATIC_DEPTH5 : pars_awars.h
• AWAR_KL_STATIC_ENABLED : pars_awars.h
• AWAR_LIST : ED4_search.cxx
• awar_list : ED4_search.cxx
• AWAR_LOCAL_GENE_LOCK : GEN_local.hxx
• AWAR_LOCAL_GENE_NAME : GEN_local.hxx
• AWAR_LOCAL_ORGANISM_LOCK : GEN_local.hxx
• AWAR_LOCAL_ORGANISM_NAME : GEN_local.hxx
• AWAR_MACRO_BASE : macros_local.hxx
• AWAR_MACRO_INTERRUPT_PROMPT : macro_gui.cxx
• AWAR_MACRO_RECORDING_EXPAND : macro_gui.cxx
• AWAR_MACRO_RECORDING_MACRO_TEXT : macro_gui.cxx
• AWAR_MACRO_RECORDING_RUNB4 : macro_gui.cxx
• AWAR_MARK_TARGET : NT_group_search.cxx
• AWAR_MARKBYREF : refentries.cxx
• AWAR_MARKBYREF_ALL : refentries.cxx
• AWAR_MARKBYREF_CONTENT : refentries.cxx
• AWAR_MARKBYREF_FIELD : refentries.cxx
• AWAR_MARKBYREF_FILTER : refentries.cxx
• AWAR_MARKBYREF_IGNORE_MISSING : refentries.cxx
• AWAR_MARKBYREF_IGNORE_UNKNOWN : refentries.cxx
• AWAR_MARKBYREF_RESULT : refentries.cxx
• AWAR_MARKBYREF_SELECTED : refentries.cxx
• AWAR_MARKBYREF_TEMP : refentries.cxx
• AWAR_MARKED_SPECIES_COUNTER : NT_extern.cxx
• AWAR_MATCH_MODE : NT_group_search.cxx
• AWAR_MATRIX : DI_view_matrix.cxx
• awar_matrix_cell() : saicalc.cxx
• AWAR_MATRIX_DIGITS : DI_view_matrix.cxx
• AWAR_MATRIX_NAMECHARS_LEFT : DI_view_matrix.cxx
• AWAR_MATRIX_NAMECHARS_TOP : DI_view_matrix.cxx
• AWAR_MATRIX_PADDINGX : DI_view_matrix.cxx
• AWAR_MATRIX_PADDINGY : DI_view_matrix.cxx
• AWAR_MATRIX_SHOWZERO : DI_view_matrix.cxx
• AWAR_MAX_FREQ_IGNORE_GAPS : AP_consensus.cxx
• AWAR_MAX_FREQ_PREFIX : AP_consensus.cxx
• AWAR_MAX_FREQ_SAI_NAME : AP_consensus.cxx
• AWAR_MAX_MISMATCHES : aw_awar_defs.hxx
• AWAR_MAYBE_INVALID_GROUP : NT_group_search.cxx
• AWAR_MERGE_GENE_SPECIES_ACI : MG_gene_species.cxx
• AWAR_MERGE_GENE_SPECIES_CREATE_FIELDS : MG_gene_species.cxx
• AWAR_MERGE_GENE_SPECIES_CURRENT_FIELD : MG_gene_species.cxx
• AWAR_MERGE_GENE_SPECIES_DEST : MG_gene_species.cxx
• AWAR_MERGE_GENE_SPECIES_EXAMPLE : MG_gene_species.cxx
• AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS : MG_gene_species.cxx
• AWAR_MERGE_GENE_SPECIES_FIELDS_SAVE : MG_gene_species.cxx
• AWAR_MERGE_GENE_SPECIES_METHOD : MG_gene_species.cxx
• AWAR_MERGE_GENE_SPECIES_SAV : MG_gene_species.cxx
• AWAR_MERGE_GENE_SPECIES_SOURCE : MG_gene_species.cxx
• AWAR_MERGE_GENE_SPECIES_TMP : MG_gene_species.cxx
• AWAR_MERGE_SAV : merge.hxx
• AWAR_MERGE_TMP : merge.hxx
• AWAR_MERGE_TMP_DST : merge.hxx
• AWAR_MERGE_TMP_SRC : merge.hxx
• AWAR_MFURC : ad_trees.cxx
• AWAR_MFURC_BOOTSTRAP_LIMIT : ad_trees.cxx
• AWAR_MFURC_CONSIDER_BOOTSTRAP : ad_trees.cxx
• AWAR_MFURC_CONSIDER_LENGTH : ad_trees.cxx
• AWAR_MFURC_CONSIDER_TERMINALS : ad_trees.cxx
• AWAR_MFURC_LENGTH_LIMIT : ad_trees.cxx
• AWAR_MOD_SAI_SCRIPT : ED4_block.cxx
• AWAR_NAME : ED4_search.cxx
• awar_name_tmp() : merge.hxx
• AWAR_NAMESERVER_ADDID : AW_rename.hxx
• AWAR_NAMESERVER_STATUS : AW_names_admin.cxx
• AWAR_NDS_PAGE : nds.cxx
• AWAR_NDS_USE_ALL : nds.cxx
• AWAR_NN_BASE : awtc_next_neighbours.hxx
• AWAR_NN_BASE_LISTED : ui_species.cxx
• AWAR_NN_BASE_SELECTED : ui_species.cxx
• AWAR_NN_COMPLEMENT : ui_species.cxx
• AWAR_NN_FAST_MODE : awtc_next_neighbours.hxx
• AWAR_NN_LISTED_DEST_FIELD : ui_species.cxx
• AWAR_NN_LISTED_SCORED_ENTRIES : ui_species.cxx
• AWAR_NN_MAX_HITS : ui_species.cxx
• AWAR_NN_MIN_SCORE : ui_species.cxx
• AWAR_NN_MISMATCHES : awtc_next_neighbours.hxx
• AWAR_NN_OLIGO_LEN : awtc_next_neighbours.hxx
• AWAR_NN_RANGE_END : ui_species.cxx
• AWAR_NN_RANGE_START : ui_species.cxx
• AWAR_NN_REL_MATCHES : awtc_next_neighbours.hxx
• AWAR_NN_REL_SCALING : awtc_next_neighbours.hxx
• AWAR_NN_SELECTED_AUTO_MARK : ui_species.cxx
• AWAR_NN_SELECTED_AUTO_SEARCH : ui_species.cxx
• AWAR_NN_SELECTED_HIT_COUNT : ui_species.cxx
• AWAR_NODIFF_INDICATOR : ED4_seq_colors.cxx
• AWAR_NTREE_MAIN_WINDOW_COUNT : NT_local.h
• AWAR_NTREE_TITLE_MODE : NT_extern.cxx
• AWAR_OPTI_MARKED_ONLY : pars_awars.h
• AWAR_OPTI_SKIP_FOLDED : pars_awars.h
• AWAR_ORGANISM_NAME : aw_awar_defs.hxx
• AWAR_OVERRIDE : MG_names.cxx
• AWAR_PARS_TYPE : ap_main.hxx
• AWAR_PARSIMONY : ap_main.hxx
• AWAR_PC_AUTO_MATCH : probe_design.cxx
• AWAR_PC_CURRENT_COLLECTION : probe_design.cxx
• AWAR_PC_MATCH_BIAS : probe_design.cxx
• AWAR_PC_MATCH_NHITS : probe_design.cxx
• AWAR_PC_MATCH_WEIGHTS : probe_design.cxx
• AWAR_PC_MATCH_WIDTH : probe_design.cxx
• AWAR_PC_MISMATCH_THRESHOLD : probe_design.cxx
• AWAR_PC_SELECTED_PROBE : probe_design.cxx
• AWAR_PC_TARGET_NAME : probe_design.cxx
• AWAR_PC_TARGET_STRING : probe_design.cxx
• AWAR_PD_COMMON_EXP_BONDS_FORMAT : probe_design.cxx
• AWAR_PD_COMMON_EXP_SPLIT : probe_design.cxx
• AWAR_PD_DESIGN_CLIPRESULT : probe_design.cxx
• AWAR_PD_DESIGN_EXP_DT : probe_design.cxx
• AWAR_PD_DESIGN_EXP_DTEDGE : probe_design.cxx
• AWAR_PD_DESIGN_GENE : probe_design.cxx
• AWAR_PD_DESIGN_MAX_ECOLIPOS : probe_design.cxx
• AWAR_PD_DESIGN_MAX_GC : probe_design.cxx
• AWAR_PD_DESIGN_MAX_LENGTH : probe_design.cxx
• AWAR_PD_DESIGN_MAX_TEMP : probe_design.cxx
• AWAR_PD_DESIGN_MAXBOND : probe_design.cxx
• AWAR_PD_DESIGN_MIN_ECOLIPOS : probe_design.cxx
• AWAR_PD_DESIGN_MIN_GC : probe_design.cxx
• AWAR_PD_DESIGN_MIN_LENGTH : probe_design.cxx
• AWAR_PD_DESIGN_MIN_TEMP : probe_design.cxx
• AWAR_PD_DESIGN_MINTARGETS : probe_design.cxx
• AWAR_PD_DESIGN_MISHIT : probe_design.cxx
• AWAR_PD_MATCH_ALSO_REVCOMP : probe_design.cxx
• AWAR_PD_MATCH_AUTOMATCH : probe_design.cxx
• AWAR_PD_MATCH_LIM_NMATCH : probe_design.cxx
• AWAR_PD_MATCH_MARKHITS : probe_design.cxx
• AWAR_PD_MATCH_MAX_RES : probe_design.cxx
• AWAR_PD_MATCH_NHITS : probe_design.cxx
• AWAR_PD_MATCH_NMATCHES : probe_design.cxx
• AWAR_PD_MATCH_RESOLVE : probe_design.cxx
• AWAR_PD_MATCH_SORTBY : probe_design.cxx
• AWAR_PD_MATCH_WRITE2TMP : probe_design.cxx
• AWAR_PD_SELECTED_MATCH : probe_design.cxx
• AWAR_PHYLO_ALIGNMENT : phylo.hxx
• AWAR_PHYLO_FILTER_AMBIG : phylo.hxx
• AWAR_PHYLO_FILTER_AUTOCALC : phylo.hxx
• AWAR_PHYLO_FILTER_DOT : phylo.hxx
• AWAR_PHYLO_FILTER_FILTER : phylo.hxx
• AWAR_PHYLO_FILTER_LOWER : phylo.hxx
• AWAR_PHYLO_FILTER_MAXHOM : phylo.hxx
• AWAR_PHYLO_FILTER_MINHOM : phylo.hxx
• AWAR_PHYLO_FILTER_MINUS : phylo.hxx
• AWAR_PHYLO_FILTER_STARTCOL : phylo.hxx
• AWAR_PHYLO_FILTER_STOPCOL : phylo.hxx
• AWAR_PHYLO_MARKERLINENAME : phylo.hxx
• AWAR_PLUGIN_OVERLAY_GROUPS : item_shader.cxx
• AWAR_PLUGIN_OVERLAY_MARKED : item_shader.cxx
• AWAR_PLUGIN_PHASE_ALTER : item_shader.cxx
• AWAR_PLUGIN_PHASE_FREQ : item_shader.cxx
• AWAR_PLUGIN_PHASE_POSTSHIFT : item_shader.cxx
• AWAR_PLUGIN_PHASE_PRESHIFT : item_shader.cxx
• AWAR_PLUGIN_RANGE : item_shader.cxx
• AWAR_PREFIX_GDE : GDE_awars.h
• AWAR_PREFIX_GDE_TEMP : GDE_awars.h
• AWAR_PRIMER_DESIGN_ALLOWED_MATCH_MIN_DIST : primer_design.hxx
• AWAR_PRIMER_DESIGN_APROX_MEM : primer_design.hxx
• AWAR_PRIMER_DESIGN_DIST_MAX : primer_design.hxx
• AWAR_PRIMER_DESIGN_DIST_MIN : primer_design.hxx
• AWAR_PRIMER_DESIGN_EXPAND_IUPAC : primer_design.hxx
• AWAR_PRIMER_DESIGN_GC_FACTOR : primer_design.hxx
• AWAR_PRIMER_DESIGN_GCRATIO_MAX : primer_design.hxx
• AWAR_PRIMER_DESIGN_GCRATIO_MIN : primer_design.hxx
• AWAR_PRIMER_DESIGN_LEFT_LENGTH : primer_design.hxx
• AWAR_PRIMER_DESIGN_LEFT_POS : primer_design.hxx
• AWAR_PRIMER_DESIGN_LENGTH_MAX : primer_design.hxx
• AWAR_PRIMER_DESIGN_LENGTH_MIN : primer_design.hxx
• AWAR_PRIMER_DESIGN_MAX_PAIRS : primer_design.hxx
• AWAR_PRIMER_DESIGN_RIGHT_LENGTH : primer_design.hxx
• AWAR_PRIMER_DESIGN_RIGHT_POS : primer_design.hxx
• AWAR_PRIMER_DESIGN_TEMP_FACTOR : primer_design.hxx
• AWAR_PRIMER_DESIGN_TEMPERATURE_MAX : primer_design.hxx
• AWAR_PRIMER_DESIGN_TEMPERATURE_MIN : primer_design.hxx
• AWAR_PRIMER_TARGET_STRING : aw_awar_defs.hxx
• AWAR_PROBE_ADMIN_PT_SERVER : probe_gui.hxx
• AWAR_PROBE_CREATE_GENE_SERVER : probe_design.cxx
• AWAR_PROMPT_BUTTON : AWT_prompt.cxx
• AWAR_PROMPT_ERROR : AWT_prompt.cxx
• AWAR_PROMPT_INPUT : AWT_prompt.cxx
• AWAR_PROMPT_TEXT : AWT_prompt.cxx
• AWAR_PROTEIN_NAME : EXP.hxx
• AWAR_PROTEIN_TYPE : AP_pro_a_nucs.hxx
• AWAR_PROTEIN_TYPE_bacterial_code_index : AP_codon_table.hxx
• AWAR_PROTEOM_NAME : EXP.hxx
• AWAR_PROTVIEW : ed4_ProteinViewer.hxx
• AWAR_PROTVIEW_COMPLEMENTARY_STRAND_1 : ed4_ProteinViewer.hxx
• AWAR_PROTVIEW_COMPLEMENTARY_STRAND_2 : ed4_ProteinViewer.hxx
• AWAR_PROTVIEW_COMPLEMENTARY_STRAND_3 : ed4_ProteinViewer.hxx
• AWAR_PROTVIEW_DEFINED_FIELDS : ed4_ProteinViewer.hxx
• AWAR_PROTVIEW_DISPLAY_OPTIONS : ed4_ProteinViewer.hxx
• AWAR_PROTVIEW_FORWARD_STRAND_1 : ed4_ProteinViewer.hxx
• AWAR_PROTVIEW_FORWARD_STRAND_2 : ed4_ProteinViewer.hxx
• AWAR_PROTVIEW_FORWARD_STRAND_3 : ed4_ProteinViewer.hxx
• AWAR_PT_SERVER : aw_awar_defs.hxx
• AWAR_PV_CURSOR : ed4_ProteinViewer.hxx
• AWAR_PV_CURSOR_CS_1 : ed4_ProteinViewer.hxx
• AWAR_PV_CURSOR_CS_2 : ed4_ProteinViewer.hxx
• AWAR_PV_CURSOR_CS_3 : ed4_ProteinViewer.hxx
• AWAR_PV_CURSOR_DB : ed4_ProteinViewer.hxx
• AWAR_PV_CURSOR_FS_1 : ed4_ProteinViewer.hxx
• AWAR_PV_CURSOR_FS_2 : ed4_ProteinViewer.hxx
• AWAR_PV_CURSOR_FS_3 : ed4_ProteinViewer.hxx
• AWAR_PV_DISPLAY_ALL : ed4_ProteinViewer.hxx
• AWAR_PV_MARKED : ed4_ProteinViewer.hxx
• AWAR_PV_MARKED_CS_1 : ed4_ProteinViewer.hxx
• AWAR_PV_MARKED_CS_2 : ed4_ProteinViewer.hxx
• AWAR_PV_MARKED_CS_3 : ed4_ProteinViewer.hxx
• AWAR_PV_MARKED_DB : ed4_ProteinViewer.hxx
• AWAR_PV_MARKED_FS_1 : ed4_ProteinViewer.hxx
• AWAR_PV_MARKED_FS_2 : ed4_ProteinViewer.hxx
• AWAR_PV_MARKED_FS_3 : ed4_ProteinViewer.hxx
• AWAR_PV_SELECTED : ed4_ProteinViewer.hxx
• AWAR_PV_SELECTED_CS_1 : ed4_ProteinViewer.hxx
• AWAR_PV_SELECTED_CS_2 : ed4_ProteinViewer.hxx
• AWAR_PV_SELECTED_CS_3 : ed4_ProteinViewer.hxx
• AWAR_PV_SELECTED_DB : ed4_ProteinViewer.hxx
• AWAR_PV_SELECTED_FS_1 : ed4_ProteinViewer.hxx
• AWAR_PV_SELECTED_FS_2 : ed4_ProteinViewer.hxx
• AWAR_PV_SELECTED_FS_3 : ed4_ProteinViewer.hxx
• AWAR_PVP_SAI : AP_pos_var_pars.cxx
• AWAR_PVP_TREE : AP_pos_var_pars.cxx
• AWAR_QUESTION : AW_question.cxx
• AWAR_RAND_PERCENT : pars_awars.h
• AWAR_RAND_REPEAT : pars_awars.h
• AWAR_RANGE : aw_awar_defs.hxx
• AWAR_RANGE_OVERLAY : AW_preset.cxx
• AWAR_REALIGN_CUTOFF : ad_transpro.cxx
• AWAR_REALIGN_INCALI : ad_transpro.cxx
• AWAR_REALIGN_UNMARK : ad_transpro.cxx
• AWAR_REMAP_ALIGNMENT : MG_preserves.cxx
• AWAR_REMAP_CANDIDATE : MG_preserves.cxx
• AWAR_REMAP_ENABLE : merge.hxx
• AWAR_REMAP_SEL_REFERENCE : MG_preserves.cxx
• AWAR_REMAP_SPECIES_LIST : merge.hxx
• AWAR_RENAME_EXPRESSION : NT_group_search.cxx
• AWAR_RENAME_STATUS : MG_names.cxx
• AWAR_REPORT_FIELD : MG_checkfield.cxx
• AWAR_RESULT_ORDER : NT_group_search.cxx
• AWAR_RESULTING_GROUP_NAME : NT_group_search.cxx
• AWAR_SAI_ALL_SPECIES : ED4_visualizeSAI.cxx
• AWAR_SAI_AUTO_SELECT : ED4_visualizeSAI.cxx
• AWAR_SAI_CLR : ED4_visualizeSAI.cxx
• AWAR_SAI_CLR_COUNT : ED4_visualizeSAI.cxx
• AWAR_SAI_CLR_DEF : ED4_visualizeSAI.cxx
• AWAR_SAI_CLR_TAB : ED4_visualizeSAI.cxx
• AWAR_SAI_CLR_TRANS_TAB_NAMES : ED4_visualizeSAI.cxx
• AWAR_SAI_CLR_TRANS_TAB_REL : ED4_visualizeSAI.cxx
• AWAR_SAI_CLR_TRANS_TABLE : ED4_visualizeSAI.cxx
• AWAR_SAI_COLOR_STR : aw_awar_defs.hxx
• AWAR_SAI_ENABLE : ED4_visualizeSAI.cxx
• AWAR_SAI_GLOBAL : aw_awar_defs.hxx
• AWAR_SAI_GROUP : ad_ext.cxx
• AWAR_SAI_NAME : aw_awar_defs.hxx
• AWAR_SAI_REFRESH_GROUPS : ad_ext.cxx
• AWAR_SAI_VISUALIZED : ED4_visualizeSAI.cxx
• AWAR_SAVED_DB_PATH : aw_global_awars.hxx
• AWAR_SC_ACI : saicalc.cxx
• AWAR_SC_ACI_BASE : saicalc.cxx
• AWAR_SC_ACI_CONFIG : saicalc.cxx
• AWAR_SC_ACI_TEMP : saicalc.cxx
• AWAR_SC_BASE : saicalc.cxx
• AWAR_SC_BOOL_BASE : saicalc.cxx
• AWAR_SC_BOOL_CONFIG : saicalc.cxx
• AWAR_SC_BOOL_IN0 : saicalc.cxx
• AWAR_SC_BOOL_IN1 : saicalc.cxx
• AWAR_SC_BOOL_OP : saicalc.cxx
• AWAR_SC_BOOL_OUT0 : saicalc.cxx
• AWAR_SC_BOOL_OUT1 : saicalc.cxx
• AWAR_SC_BOOL_RULES : saicalc.cxx
• AWAR_SC_BOOL_SEL_RULE : saicalc.cxx
• AWAR_SC_BOOL_TEMP : saicalc.cxx
• AWAR_SC_MATRIX_BASE : saicalc.cxx
• AWAR_SC_MATRIX_CELL_TEMPL : saicalc.cxx
• AWAR_SC_MATRIX_CONFIG : saicalc.cxx
• AWAR_SC_MATRIX_TEMP : saicalc.cxx
• AWAR_SC_METHOD : saicalc.cxx
• AWAR_SC_METHOD_CONFIG : saicalc.cxx
• AWAR_SC_SCOPE : saicalc.cxx
• AWAR_SC_SOURCE_SAI_LIST : saicalc.cxx
• AWAR_SC_TARGET_SAI : saicalc.cxx
• AWAR_SC_TEMP : saicalc.cxx
• AWAR_SC_TRANSLATE_BASE : saicalc.cxx
• AWAR_SC_TRANSLATE_CONFIG : saicalc.cxx
• AWAR_SC_TRANSLATE_DEFAULT : saicalc.cxx
• AWAR_SC_TRANSLATE_IO_TEMPL : saicalc.cxx
• AWAR_SC_TRANSLATE_TEMP : saicalc.cxx
• AWAR_SEARCH_MODE : NT_group_search.cxx
• AWAR_SEARCH_WHICH_TREES : NT_group_search.cxx
• AWAR_SECEDIT_BASELINEWIDTH : SEC_db.hxx
• AWAR_SECEDIT_BOND_SYMBOLS_EDIT4 : SEC_db.hxx
• AWAR_SECEDIT_BOND_SYMBOLS_TRANS : SEC_db.hxx
• AWAR_SECEDIT_BOND_THICKNESS : SEC_db.hxx
• AWAR_SECEDIT_DISPLAY_SAI : SEC_db.hxx
• AWAR_SECEDIT_DISPLAY_SEARCH : SEC_db.hxx
• AWAR_SECEDIT_DISPPOS_BINDING : SEC_db.hxx
• AWAR_SECEDIT_DISPPOS_ECOLI : SEC_db.hxx
• AWAR_SECEDIT_DIST_BETW_STRANDS : SEC_db.hxx
• AWAR_SECEDIT_HIDE_BASES : SEC_db.hxx
• AWAR_SECEDIT_SAVEDIR : SEC_db.hxx
• AWAR_SECEDIT_SHOW_BONDS : SEC_db.hxx
• AWAR_SECEDIT_SHOW_CURPOS : SEC_db.hxx
• AWAR_SECEDIT_SHOW_DEBUG : SEC_db.hxx
• AWAR_SECEDIT_SHOW_ECOLI_POS : SEC_db.hxx
• AWAR_SECEDIT_SHOW_HELIX_NRS : SEC_db.hxx
• AWAR_SECEDIT_SHOW_STR_SKELETON : SEC_db.hxx
• AWAR_SECEDIT_SKELETON_THICKNESS : SEC_db.hxx
• AWAR_SECURITY_LEVEL : aw_awar_defs.hxx
• AWAR_SELECT_ACISRT : nds.h
• AWAR_SELECT_ACISRT_PRE : nds.h
• awar_selected_FTS() : xfergui.cxx
• AWAR_SELECTED_GROUP_NAME : NT_group_search.cxx
• AWAR_SELECTED_PLUGIN : item_shader.cxx
• AWAR_SELECTED_RESULT_GROUP : NT_group_search.cxx
• AWAR_SELECTED_VALNAME : NT_validManual.cxx
• AWAR_SELECTOR_COLOR_LABEL : AW_preset.cxx
• AWAR_SELECTOR_FONT_LABEL : AW_preset.cxx
• AWAR_SELECTOR_FONT_NAME : AW_preset.cxx
• AWAR_SELECTOR_FONT_SIZE : AW_preset.cxx
• AWAR_SEQ_NAME_SELECTOR_AA : ED4_seq_colors.cxx
• AWAR_SEQ_NAME_SELECTOR_NA : ED4_seq_colors.cxx
• AWAR_SEQ_NAME_STRINGS_TEMPLATE : ED4_seq_colors.cxx
• AWAR_SEQ_NAME_TEMPLATE : ED4_seq_colors.cxx
• AWAR_SEQ_PATH : ED4_seq_colors.cxx
• AWAR_SET_CURSOR_POSITION : aw_awar_defs.hxx
• awar_set_temp_if_is_default() : AW_root.cxx
• AWAR_SHOW_DIMENSION : item_shader.cxx
• AWAR_SPECIES_DST : MG_species.cxx
• AWAR_SPECIES_JOIN_FIELD : NT_join.cxx
• AWAR_SPECIES_JOIN_SEP : NT_join.cxx
• AWAR_SPECIES_JOIN_SEP2 : NT_join.cxx
• AWAR_SPECIES_NAME : aw_awar_defs.hxx
• AWAR_SPECIES_NAME_LOCAL : aw_awar_defs.hxx
• AWAR_SPECIES_SRC : MG_species.cxx
• AWAR_SPECIES_XFER_FTS : MG_species.cxx
• AWAR_SPECIES_XFER_SCOPE : MG_species.cxx
• AWAR_SPECIES_XFER_TYPE : MG_species.cxx
• AWAR_SPLIT_ALI_BASE : NT_split_ali.cxx
• AWAR_SPLIT_ALI_BTMP : NT_split_ali.cxx
• AWAR_SPLIT_ALI_MARKED : NT_split_ali.cxx
• AWAR_SPLIT_ALI_OVERWRITE : NT_split_ali.cxx
• AWAR_SPLIT_ALI_POSITIONS : NT_split_ali.cxx
• AWAR_SPLIT_ALI_TARGET : NT_split_ali.cxx
• AWAR_SPV_ACI_COMMAND : SaiProbeVisualization.hxx
• AWAR_SPV_DB_FIELD_NAME : SaiProbeVisualization.hxx
• AWAR_SPV_DB_FIELD_WIDTH : SaiProbeVisualization.hxx
• AWAR_SPV_DISP_SAI : SaiProbeVisualization.hxx
• AWAR_SPV_SAI_2_PROBE : SaiProbeVisualization.hxx
• AWAR_SPV_SAI_COLOR : SaiProbeVisualization.hxx
• AWAR_SPV_SELECTED_PROBE : SaiProbeVisualization.hxx
• AWAR_SQ_FILTER_NAME : SQ_main.cxx
• AWAR_SQ_MARK_BELOW : SQ_main.cxx
• AWAR_SQ_MARK_FLAG : SQ_main.cxx
• AWAR_SQ_MARK_ONLY_FLAG : SQ_main.cxx
• AWAR_SQ_PERM : SQ_main.cxx
• AWAR_SQ_REEVALUATE : SQ_main.cxx
• AWAR_SQ_TEMP : SQ_main.cxx
• AWAR_SQ_WEIGHT_BASES : SQ_main.cxx
• AWAR_SQ_WEIGHT_CONSENSUS : SQ_main.cxx
• AWAR_SQ_WEIGHT_DEVIATION : SQ_main.cxx
• AWAR_SQ_WEIGHT_GC : SQ_main.cxx
• AWAR_SQ_WEIGHT_HELIX : SQ_main.cxx
• AWAR_SQ_WEIGHT_IUPAC : SQ_main.cxx
• AWAR_STACKPOINTER : ap_main.hxx
• AWAR_STATUS : AW_status.cxx
• AWAR_STATUS_ELAPSED : AW_status.cxx
• AWAR_STATUS_GAUGE : AW_status.cxx
• AWAR_STATUS_TEXT : AW_status.cxx
• AWAR_STATUS_TITLE : AW_status.cxx
• AWAR_SUBMIT_FILE : AWTC_submission.cxx
• AWAR_SUBMIT_PARSED : AWTC_submission.cxx
• AWAR_SUBMIT_PARSER : AWTC_submission.cxx
• AWAR_SUBMIT_PRIVAT : AWTC_submission.cxx
• AWAR_SUBMIT_SOURCE : AWTC_submission.cxx
• AWAR_TAG_DEL : MG_species.cxx
• AWAR_TAG_DST : MG_species.cxx
• AWAR_TAG_SRC : MG_species.cxx
• AWAR_TARGET_STRING : aw_awar_defs.hxx
• AWAR_TEMPL_AUTO_SYNCED : NT_sync_scroll.cxx
• AWAR_TEMPL_SYNCED_WITH_WINDOW : NT_sync_scroll.cxx
• AWAR_TESTER_EXPORT_RESULT : AWTI_edit.cxx
• AWAR_TESTER_IMPORT_FILENAME : AWTI_edit.cxx
• AWAR_TESTER_IMPORT_SPECIES : AWTI_edit.cxx
• AWAR_TESTER_IMPORT_STATUS : AWTI_edit.cxx
• AWAR_TESTER_LINK_EX2IMPORT : AWTI_edit.cxx
• AWAR_TOPAREA_SAIS : NT_local.h
• AWAR_TOUPPER : MG_checkfield.cxx
• AWAR_TRACK_ALI : NT_trackAliChanges.cxx
• AWAR_TRACK_BASE : NT_trackAliChanges.cxx
• AWAR_TRACK_INITIALS : NT_trackAliChanges.cxx
• awar_translate() : saicalc.cxx
• AWAR_TRANSPRO_DEST : ad_transpro.cxx
• AWAR_TRANSPRO_MODE : ad_transpro.cxx
• AWAR_TRANSPRO_POS : ad_transpro.cxx
• AWAR_TRANSPRO_PREFIX : ad_transpro.cxx
• AWAR_TRANSPRO_SOURCE : ad_transpro.cxx
• AWAR_TRANSPRO_WRITE : ad_transpro.cxx
• AWAR_TRANSPRO_XSTART : ad_transpro.cxx
• AWAR_TREE : aw_awar_defs.hxx
• AWAR_TREE_COMPARE_ACTION : NT_taxonomy.cxx
• AWAR_TREE_COMPARE_MIN_TAX_LEVELS : NT_taxonomy.cxx
• AWAR_TREE_COMPARE_WRITE_FIELD : NT_taxonomy.cxx
• AWAR_TREE_CONSENSE_SAV : ad_trees.cxx
• AWAR_TREE_CONSENSE_SELECTED : ad_trees.cxx
• AWAR_TREE_CONSENSE_TMP : ad_trees.cxx
• AWAR_TREE_CONSENSE_TREE : ad_trees.cxx
• AWAR_TREE_DEST : TreeAdmin.cxx
• AWAR_TREE_EXPORT_FILEBASE : ad_trees.cxx
• AWAR_TREE_EXPORT_FILTER : ad_trees.cxx
• AWAR_TREE_EXPORT_FORMAT : ad_trees.cxx
• AWAR_TREE_EXPORT_HIDE_FOLDED_GROUPS : ad_trees.cxx
• AWAR_TREE_EXPORT_INCLUDE_BOOTSTRAPS : ad_trees.cxx
• AWAR_TREE_EXPORT_INCLUDE_BRANCHLENS : ad_trees.cxx
• AWAR_TREE_EXPORT_INCLUDE_GROUPNAMES : ad_trees.cxx
• AWAR_TREE_EXPORT_NAME : ad_trees.cxx
• AWAR_TREE_EXPORT_NDS : ad_trees.cxx
• AWAR_TREE_EXPORT_NON_ASCII : ad_trees.cxx
• AWAR_TREE_EXPORT_QUOTEMODE : ad_trees.cxx
• AWAR_TREE_EXPORT_REPLACE : ad_trees.cxx
• AWAR_TREE_EXPORT_SAV : ad_trees.cxx
• AWAR_TREE_IMPORT : ad_trees.cxx
• AWAR_TREE_NAME : ad_trees.h
• AWAR_TREE_NAME_DST : MG_trees.cxx
• AWAR_TREE_NAME_SRC : MG_trees.cxx
• AWAR_TREE_OVERWRITE : MG_trees.cxx
• AWAR_TREE_RECOMPUTE : aw_awar_defs.hxx
• AWAR_TREE_REFRESH : aw_awar_defs.hxx
• AWAR_TREE_REM : ad_trees.cxx
• AWAR_TREE_REV1 : NT_sort.cxx
• AWAR_TREE_REV2 : NT_sort.cxx
• AWAR_TREE_REV3 : NT_sort.cxx
• AWAR_TREE_SAV : ad_trees.cxx
• AWAR_TREE_SECURITY : ad_trees.cxx
• AWAR_TREE_SELECTED : NT_group_search.cxx
• AWAR_TREE_SORT1 : NT_sort.cxx
• AWAR_TREE_SORT2 : NT_sort.cxx
• AWAR_TREE_SORT3 : NT_sort.cxx
• AWAR_TREE_SOURCE : TreeAdmin.cxx
• AWAR_TREE_SYNCROOT_SELECTED : NT_syncroot.cxx
• AWAR_TREE_TMP : ad_trees.cxx
• AWAR_TREE_XFER_WHAT : MG_trees.cxx
• awar_updated_cb() : AW_global_awars.cxx
• AWAR_VALUE_MAX : field_shader.cxx
• AWAR_VALUE_MIN : field_shader.cxx
• AWAR_WWW_BROWSER : aw_global_awars.hxx
• AWAR_WWW_DESC_TEMPLATE : AWT_www.cxx
• AWAR_WWW_SELECT : AWT_www.cxx
• AWAR_WWW_SELECT_TEMPLATE : AWT_www.cxx
• AWAR_WWW_TEMPLATE : AWT_www.cxx
• AWAR_XFERRULE_ACI : xfergui.cxx
• AWAR_XFERRULE_AVAIL_CATEGORY : xfergui.cxx
• AWAR_XFERRULE_AVAIL_SELECTED : xfergui.cxx
• AWAR_XFERRULE_FIELD : xfergui.cxx
• AWAR_XFERRULE_INPUT_FIELDS : xfergui.cxx
• AWAR_XFERRULE_INPUT_SELECTED : xfergui.cxx
• AWAR_XFERRULE_LOSS : xfergui.cxx
• AWAR_XFERRULE_SELECTED : xfergui.cxx
• AWAR_XFERRULE_SEP : xfergui.cxx
• AWAR_XFERRULE_TARGETFIELD : xfergui.cxx
• AWAR_XFERRULE_TYPE : xfergui.cxx
• AWAR_XFERSET_COMMENT : xfergui.cxx
• AWAR_XFERSET_FTSBASE : xfergui.cxx
• AWAR_XFERSET_FTSDIR : xfergui.cxx
• AWAR_XFERSET_FTSFILTER : xfergui.cxx
• AWAR_XFERSET_FTSNAME : xfergui.cxx
• AWAR_XFERSET_SELECTED : xfergui.cxx
• AWAR_XFERSET_UNDEFINED : xfergui.cxx
• AWARBASE_XFERRULE_TMP : xfergui.cxx
• AWARBASE_XFERSET_TMP : xfergui.cxx
• AWARFORMAT_CRIT_EQUALS : NT_group_search.cxx
• AWARFORMAT_CRIT_KEY : NT_group_search.cxx
• AWARFORMAT_CRIT_MATCHES : NT_group_search.cxx
• AWARFORMAT_CRIT_OPERATOR : NT_group_search.cxx
• awarname() : ED4_flags.cxx , NT_sync_scroll.cxx , db_scanner.cxx
• awarvalue2query_operator() : db_query.cxx
• awm : RNA3D_Interface.cxx
• AWM_ALL : aw_window.hxx
• AWM_BASIC : aw_window.hxx
• AWM_DISABLED : aw_window.hxx
• AWM_EXP : aw_window.hxx
• AWM_MASK_DEFAULT : aw_window.hxx
• AWM_MASK_EXPERT : aw_window.hxx
• AWM_MASK_UNKNOWN : aw_window.hxx
• aws_init_localized() : ED4_search.cxx
• AWT_activate_prompt() : AWT_prompt.cxx , awt_prompt.hxx
• awt_add_sequences_to_list() : AWT_filter.cxx
• AWT_announce_tree_deleted() : AWT_TreeAwars.cxx , awt_TreeAwars.hxx
• AWT_announce_tree_renamed() : AWT_TreeAwars.cxx , awt_TreeAwars.hxx
• AWT_APRINT_DEST_FILE_ASCII : awt_asciiprint.hxx
• AWT_APRINT_DEST_FILE_PS : awt_asciiprint.hxx
• AWT_APRINT_DEST_PREVIEW : awt_asciiprint.hxx
• AWT_APRINT_DEST_PRINTER : awt_asciiprint.hxx
• AWT_APRINT_ORIENTATION_DOUBLE_PORTRAIT : awt_asciiprint.hxx
• AWT_APRINT_ORIENTATION_LANDSCAPE : awt_asciiprint.hxx
• AWT_APRINT_ORIENTATION_PORTRAIT : awt_asciiprint.hxx
• AWT_APRINT_PAPERSIZE_A4 : awt_asciiprint.hxx
• AWT_APRINT_PAPERSIZE_US : awt_asciiprint.hxx
• awt_aps_calc_pages_needed() : AWT_asciiprint.cxx
• awt_aps_get_default_lines_per_page() : AWT_asciiprint.cxx
• awt_aps_get_xy_ratio() : AWT_asciiprint.cxx
• awt_aps_go() : AWT_asciiprint.cxx
• awt_aps_set_magnification_to_fit_xpage() : AWT_asciiprint.cxx
• awt_aps_set_magnification_to_fit_ypage() : AWT_asciiprint.cxx
• awt_aps_text_changed() : AWT_asciiprint.cxx
• AWT_asciiprint_destination : awt_asciiprint.hxx
• AWT_asciiprint_orientation : awt_asciiprint.hxx
• AWT_asciiprint_paper_size : awt_asciiprint.hxx
• awt_assert : AWT_modules.cxx , iupac.cxx , awt_canvas.hxx , AWT_canio.cxx , awt.hxx , awt_config_manager.hxx , AWT_TreeAwars.cxx
• awt_auto_popdown_cb() : awt_sel_boxes.hxx , AWT_sel_boxes.cxx
• AWT_CATCH : aw_device_click.hxx
• AWT_change_input_mask() : AWT_input_mask.cxx
• awt_clear_selection_list_cb() : awt_sel_boxes.hxx , AWT_sel_boxes.cxx
• AWT_codon_def : AP_codon_table.cxx
• AWT_CODON_TABLE_MAX_NAME_LENGTH : AP_codon_table.cxx
• AWT_CODON_TABLES : AP_codon_table.hxx
• awt_collect_mode : awt_modules.hxx
• AWT_COMMAND_MODE : awt_canvas.hxx
• AWT_console() : awt_misc.hxx , AWT_misc.cxx , awt_misc.hxx
• awt_create_2_filter_window() : AWT_filter.cxx
• awt_create_ALI_selection_button() : awt_sel_boxes.hxx , AWT_sel_boxes.cxx
• awt_create_ALI_selection_list() : AWT_sel_boxes.cxx , awt_sel_boxes.hxx
• AWT_create_ascii_print_window() : AWT_asciiprint.cxx , awt.hxx
• awt_create_aww_vars() : AWT_www.cxx , awt_www.hxx
• awt_create_collect_buttons() : awt_modules.hxx
• awt_create_CONFIG_selection_list() : AWT_sel_boxes.cxx , awt_sel_boxes.hxx
• awt_create_filter_awars() : awt_filter.hxx , AWT_filter.cxx
• awt_create_input_mask() : AWT_input_mask.cxx
• AWT_create_IUPAC_info_window() : AWT_misc.cxx , awt_misc.hxx
• awt_create_load_box() : awt_sel_boxes.hxx , AWT_sel_boxes.cxx
• AWT_create_mask_submenu() : AWT_input_mask.cxx , awt_input_mask.hxx
• awt_create_order_buttons() : awt_modules.hxx
• awt_create_PTSERVER_selection_button() : awt_sel_boxes.hxx , AWT_sel_boxes.cxx
• awt_create_PTSERVER_selection_list() : AWT_sel_boxes.cxx , awt_sel_boxes.hxx
• AWT_create_root() : AWT_db_browser.cxx , awt.hxx
• awt_create_SAI_selection_button() : AWT_sel_boxes.cxx , awt_sel_boxes.hxx
• awt_create_SAI_selection_list() : awt_sel_boxes.hxx , AWT_sel_boxes.cxx
• awt_create_select_cancel_window() : DI_matr.cxx
• awt_create_select_filter() : AWT_filter.cxx , awt_filter.hxx
• awt_create_select_filter_win() : AWT_filter.cxx , awt_filter.hxx
• awt_create_select_filter_window_aw_cb() : AWT_filter.cxx
• awt_create_select_filter_window_gb_cb() : AWT_filter.cxx
• awt_create_selection_list_with_input_field() : awt_sel_boxes.hxx , AWT_sel_boxes.cxx
• awt_create_subset_selection_list() : awt_sel_boxes.hxx , AWT_sel_boxes.cxx
• awt_create_TREE_selection_list() : AWT_sel_boxes.cxx , awt_sel_boxes.hxx
• AWT_create_www_window() : AWT_www.cxx , awt_www.hxx
• AWT_default_protein_type() : AP_pro_a_nucs.cxx , AP_pro_a_nucs.hxx
• awt_destroy_filter() : awt_filter.hxx , AWT_filter.cxx
• AWT_destroy_input_masks() : awt_input_mask.hxx , AWT_input_mask.cxx
• awt_edit_arbtcpdat_cb() : AWT_sel_boxes.cxx , awt_sel_boxes.hxx
• AWT_edit_input_mask() : AWT_input_mask.cxx
• AWT_expose_cb() : AWT_canvas.cxx , awt_canvas.hxx
• AWT_FILTER_SIMPLIFY : AP_filter.hxx
• AWT_FILTER_SIMPLIFY_DNA : AP_filter.hxx
• AWT_FILTER_SIMPLIFY_NONE : AP_filter.hxx
• AWT_FILTER_SIMPLIFY_NOT_INITIALIZED : AP_filter.hxx
• AWT_FILTER_SIMPLIFY_PROTEIN : AP_filter.hxx
• AWT_FIT_LARGER : awt_canvas.hxx
• AWT_fit_mode : awt_canvas.hxx
• AWT_FIT_NEVER : awt_canvas.hxx
• AWT_FIT_SMALLER : awt_canvas.hxx
• AWT_FIT_X : awt_canvas.hxx
• AWT_FIT_Y : awt_canvas.hxx
• AWT_GC_ALL_MARKED : AP_TreeColors.hxx
• AWT_GC_AQUAMARIN : AP_TreeColors.hxx
• AWT_GC_BLACK : AP_TreeColors.hxx
• AWT_GC_BLUE : AP_TreeColors.hxx
• AWT_GC_BOOTSTRAP : AP_TreeColors.hxx
• AWT_GC_BOOTSTRAP_LIMITED : AP_TreeColors.hxx
• AWT_GC_BRANCH_REMARK : AP_TreeColors.hxx
• AWT_GC_changed_cb() : AWT_canvas.cxx , awt_canvas.hxx
• AWT_GC_CURSOR : AP_TreeColors.hxx
• AWT_GC_CYAN : AP_TreeColors.hxx
• AWT_GC_FIRST_COLOR_GROUP : AP_TreeColors.hxx
• AWT_GC_FIRST_RANGE_COLOR : AP_TreeColors.hxx
• AWT_GC_GREEN : AP_TreeColors.hxx
• AWT_GC_IRS_GROUP_BOX : AP_TreeColors.hxx
• AWT_GC_LAWNGREEN : AP_TreeColors.hxx
• AWT_GC_MAGENTA : AP_TreeColors.hxx
• AWT_GC_MAX : AP_TreeColors.hxx
• AWT_GC_NONE_MARKED : AP_TreeColors.hxx
• AWT_GC_ONLY_ZOMBIES : AP_TreeColors.hxx
• AWT_GC_ORANGE : AP_TreeColors.hxx
• AWT_GC_PINK : AP_TreeColors.hxx
• AWT_GC_PURPLE : AP_TreeColors.hxx
• AWT_GC_RED : AP_TreeColors.hxx
• AWT_GC_SKYBLUE : AP_TreeColors.hxx
• AWT_GC_SOME_MARKED : AP_TreeColors.hxx
• AWT_GC_WHITE : AP_TreeColors.hxx
• AWT_GC_YELLOW : AP_TreeColors.hxx
• AWT_get_codon_code_name() : AP_codon_table.cxx , AP_codon_table.hxx
• AWT_get_combined_filter_name() : awt_filter.hxx , AWT_filter.cxx
• awt_get_filter() : awt_filter.hxx , AWT_filter.cxx
• AWT_get_translator() : AP_pro_a_nucs.hxx , AP_pro_a_nucs.cxx
• AWT_get_user_translator() : AP_pro_a_nucs.cxx , AP_pro_a_nucs.hxx
• AWT_getItemType() : AWT_input_mask.cxx , awt_input_mask.hxx
• AWT_graphic_parsimony_root_changed() : PARS_dtree.cxx
• AWT_graphic_tree_node_deleted() : TreeDisplay.cxx
• AWT_graphic_tree_root_changed() : TreeDisplay.cxx
• AWT_initialize_input_mask() : AWT_input_mask.cxx , awt.hxx
• AWT_initTreeAwarRegistry() : awt_TreeAwars.hxx , AWT_TreeAwars.cxx
• awt_input_mask_awar_changed_cb() : AWT_input_mask.cxx
• AWT_input_mask_browse_url() : AWT_input_mask.cxx
• AWT_input_mask_perform_action() : AWT_input_mask.cxx
• awt_input_mask_ptr : AWT_input_mask.cxx
• AWT_insert_config_manager() : AWT_config_manager.cxx , awt_config_manager.hxx
• AWT_insert_DBcompression_selector() : AWT_misc.cxx , awt_misc.hxx
• AWT_insert_DBsaveType_selector() : awt_misc.hxx , AWT_misc.cxx
• AWT_install_cb_guards() : AWT_db_browser.cxx , awt.hxx
• AWT_install_postcb_cb() : AWT_db_browser.cxx , awt.hxx
• awt_invalid_filter() : AWT_filter.cxx , awt_filter.hxx
• AWT_is_codon() : AP_codon_table.hxx , AP_codon_table.cxx
• AWT_IT_EXPERIMENT : awt_input_mask.hxx
• AWT_IT_GENE : awt_input_mask.hxx
• AWT_IT_ORGANISM : awt_input_mask.hxx
• AWT_IT_SPECIES : awt_input_mask.hxx
• AWT_IT_TYPES : awt_input_mask.hxx
• AWT_IT_UNKNOWN : awt_input_mask.hxx
• awt_item_type : awt_input_mask.hxx
• awt_itemtype_names : AWT_input_mask.cxx
• AWT_KEEP_MARKED : AP_Tree.hxx
• AWT_look_input_mask() : awt.hxx , AWT_input_mask.cxx
• awt_mask_item_list : awt_input_mask_internal.hxx
• awt_mask_item_ptr : awt_input_mask_internal.hxx
• AWT_MAX_CODONS : AP_codon_table.hxx
• AWT_MIN_WIDTH : awt_canvas.hxx
• AWT_MODE_CURSOR : awt_canvas.hxx
• AWT_MODE_EDIT : awt_canvas.hxx
• AWT_MODE_EMPTY : awt_canvas.hxx
• AWT_MODE_FOLD : awt_canvas.hxx
• AWT_MODE_GROUP : awt_canvas.hxx
• AWT_MODE_INFO : awt_canvas.hxx
• AWT_MODE_KERNINGHAN : awt_canvas.hxx
• AWT_MODE_LENGTH : awt_canvas.hxx
• AWT_MODE_LINE : awt_canvas.hxx
• AWT_MODE_LZOOM : awt_canvas.hxx
• AWT_MODE_MARK : awt_canvas.hxx
• AWT_MODE_MOVE : awt_canvas.hxx
• AWT_MODE_MULTIFURC : awt_canvas.hxx
• AWT_MODE_NNI : awt_canvas.hxx
• AWT_MODE_NONE : awt_canvas.hxx
• AWT_MODE_OPTIMIZE : awt_canvas.hxx
• AWT_MODE_PINFO : awt_canvas.hxx
• AWT_MODE_ROTATE : awt_canvas.hxx
• AWT_MODE_SELECT : awt_canvas.hxx
• AWT_MODE_SET_CURSOR : awt_canvas.hxx
• AWT_MODE_SETROOT : awt_canvas.hxx
• AWT_MODE_SPREAD : awt_canvas.hxx
• AWT_MODE_STRETCH : awt_canvas.hxx
• AWT_MODE_SWAP : awt_canvas.hxx
• AWT_MODE_WWW : awt_canvas.hxx
• AWT_MODE_ZOOM : awt_canvas.hxx
• AWT_modify_managed_configs() : AWT_config_manager.cxx , awt_config_manager.hxx
• AWT_NO_CATCH : aw_device_click.hxx
• awt_open_ACI_URL_with_item() : awt_www.hxx , AWT_www.cxx
• awt_open_input_mask() : AWT_input_mask.cxx
• AWT_open_input_mask() : AWT_input_mask.cxx
• awt_openDefaultURL_on_selected_species() : AWT_www.cxx
• awt_openDefaultURL_with_item() : AWT_www.cxx , awt_www.hxx
• AWT_OpenMaskWindowCallback : awt_input_mask.hxx
• AWT_openURL() : awt_www.hxx , AWT_www.cxx
• AWT_popup_print_window() : AWT_canio.cxx , awt_canvas.hxx
• awt_popup_SAI_selection_list() : AWT_sel_boxes.cxx , awt_sel_boxes.hxx
• AWT_popup_sec_export_window() : AWT_canio.cxx , awt_canvas.hxx
• AWT_popup_tree_export_window() : AWT_canio.cxx , awt_canvas.hxx
• awt_pre_to_view() : nds.cxx
• awt_print_tree_check_size() : AWT_canio.cxx
• awt_reconfigure_ALI_selection_list() : awt_sel_boxes.hxx , AWT_sel_boxes.cxx
• AWT_registerTreeAwarCallback() : awt_TreeAwars.hxx , AWT_TreeAwars.cxx
• AWT_registerTreeAwarSimple() : AWT_TreeAwars.cxx , awt_TreeAwars.hxx
• AWT_reload_input_mask() : AWT_input_mask.cxx
• AWT_REMOVE_MARKED : AP_Tree.hxx
• AWT_REMOVE_NO_SEQUENCE : AP_Tree.hxx
• AWT_REMOVE_UNMARKED : AP_Tree.hxx
• AWT_REMOVE_ZOMBIES : AP_Tree.hxx
• AWT_RemoveType : AP_Tree.hxx
• awt_rename_cb() : AW_rename.cxx
• awt_reorder_mode : awt_modules.hxx
• AWT_resize_cb() : awt_canvas.hxx
• AWT_SCOPE_GLOBAL : AWT_input_mask.cxx
• AWT_SCOPE_LOCAL : AWT_input_mask.cxx
• awt_select_pre_from_view() : nds.cxx
• awt_set_awar_to_valid_filter_good_for_tree_methods() : AWT_filter.cxx , awt_filter.hxx
• awt_set_subset_selection_content() : awt_sel_boxes.hxx , AWT_sel_boxes.cxx
• AWT_show_file() : awt.hxx , AWT_asciiprint.cxx
• awt_std_SAI_filter_cb() : AWT_sel_boxes.cxx , awt_sel_boxes.hxx
• AWT_system_cb() : awt_misc.hxx , AWT_misc.cxx
• AWT_system_in_console_cb() : awt_misc.hxx , AWT_misc.cxx
• AWT_TREE : TreeDisplay.hxx
• AWT_TREE_PARS : PARS_main.cxx
• AWT_trigger_remote_action() : AWT_db_browser.cxx , awt.hxx
• awt_www_select_change() : AWT_www.cxx
• AWT_ZOOM_BOTH : awt_canvas.hxx
• AWT_zoom_mode : awt_canvas.hxx
• AWT_ZOOM_NEVER : awt_canvas.hxx
• AWT_ZOOM_OUT_STEP : awt_canvas.hxx
• AWT_ZOOM_X : awt_canvas.hxx
• AWT_ZOOM_Y : awt_canvas.hxx
• awtc_assert : AWTC_submission.cxx
• AWTC_create_common_next_neighbour_fields() : AWTC_next_neighbours.cxx , awtc_next_neighbours.hxx
• AWTC_create_common_next_neighbour_vars() : awtc_next_neighbours.hxx , AWTC_next_neighbours.cxx
• AWTC_create_numbered_suffix() : AW_rename.cxx , AW_rename.hxx
• AWTC_create_rename_awars() : AW_rename.hxx
• AWTC_create_rename_window() : AW_rename.cxx , AW_rename.hxx
• AWTC_create_submission_variables() : awtc_submission.hxx , AWTC_submission.cxx
• AWTC_create_submission_window() : awtc_submission.hxx , AWTC_submission.cxx
• awtc_delete_names_file() : AW_names_admin.cxx
• awtc_edit_names_file() : AW_names_admin.cxx
• AWTC_generate_one_name() : AW_rename.hxx , AW_rename.cxx
• AWTC_generate_random_name() : AW_rename.cxx , AW_rename.hxx
• AWTC_makeUniqueShortName() : AW_rename.cxx , AW_rename.hxx
• awtc_mark_hits() : ui_species.cxx
• awtc_move_hits() : ui_species.cxx
• AWTC_name_quality() : AW_rename.cxx , AW_rename.hxx
• awtc_nn_search() : ui_species.cxx
• awtc_nn_search_all_listed() : ui_species.cxx
• AWTC_pars_names() : AW_rename.cxx , AW_rename.hxx
• AWTC_recreate_name() : AW_rename.hxx , AW_rename.cxx
• awtc_remove_arb_acc() : AW_names_admin.cxx
• AWTI_acquire_imported_DB_and_cleanup_importer() : awti_import.hxx , AWTI_import.cxx
• AWTI_activate_export_test_window() : AWTI_edit.cxx , awti_edit.hxx
• AWTI_activate_import_test_window() : AWTI_edit.cxx , awti_edit.hxx
• awti_assert : awti_exp_local.hxx , awti_imp_local.hxx
• AWTI_cleanup_importer() : awti_import.hxx , AWTI_import.cxx
• AWTI_IMPORT_CHECK_BUFFER_SIZE : awti_imp_local.hxx
• AWTI_import_set_ali_and_type() : AWTI_import.cxx , awti_import.hxx
• AWTI_ImportType : awti_import.hxx
• AWTI_open_import_window() : awti_import.hxx , AWTI_import.cxx
• AWTI_set_importDB_pointer() : AWTI_import.cxx , awti_import.hxx
• awxkeymap : AW_xkey.cxx
• awxkeymap_modfree : AW_xkey.cxx
• awxkeymap_string_2_key_hash : AW_xkey.cxx
• awxkeymap_xkey_2_key_hash : AW_xkey.cxx