Here is a list of all file members with links to the files they belong to:

- p -

P : arb_probe.cxx
p_aww : aw_window_Xm.hxx
p_encode() : ClustalV.cxx
p_global : aw_window_Xm.hxx
p_nonkey_start : defs.h
p_r : aw_window_Xm.hxx
page_height : arb_a2ps.c
page_size_check_cb() : AWT_canio.cxx
page_width : arb_a2ps.c
pages : arb_a2ps.c
PAINT_COLORED : GEN_graphic.cxx
PAINT_COUNT : GEN_graphic.cxx
PAINT_MARKED : GEN_graphic.cxx
PAINT_MAX : GEN_graphic.cxx
PAINT_MIN : GEN_graphic.cxx
PAINT_NORMAL : GEN_graphic.cxx
PAINT_SELECTED : GEN_graphic.cxx
paintBackgroundAndSAI() : SaiProbeVisualization.cxx
paintData : SEC_paint.cxx
paintProbeInfo() : SaiProbeVisualization.cxx
PaintWhat : GEN_graphic.cxx
PAIR_TYPE_COUNT : BI_helix.hxx
PairedPositions : ED4_detect_bad_ali.cxx
pairPart : rns.c , rns.h
PalettedTextures : glpng.c
pam : ClustalV.cxx
PAM : di_protdist.hxx
pam250mt : ClustalV.cxx
pamo : ClustalV.cxx
panicBuffer : arb_mem.cxx
paper_changed_cb() : AWT_canio.cxx
ParagraphType : arb_help2xml.cxx
PARAM_2_OUT : gb_aci_impl.h
PARAM_IF : gb_aci_impl.h
paren_string() : mg.cxx
parentEdge() : TreeNode.h
pargc : arb_probe.cxx
pargv : arb_probe.cxx
pars_check_size() : PARS_main.cxx
pars_create_all_awars() : PARS_main.cxx
pars_exit() : PARS_main.cxx
pars_generate_aliview() : PARS_dtree.cxx
PARS_infomode_cb() : PARS_main.cxx
PARS_map_viewer() : PARS_main.cxx , pars_main.hxx
PARS_pars_type : ap_main.hxx
pars_reset_optimal_parsimony() : PARS_main.cxx
pars_start_cb() : PARS_main.cxx
PARS_TRANSVERSION : ap_main.hxx
PARS_tree_init() : PARS_dtree.cxx , pars_dtree.hxx
PARS_WAGNER : ap_main.hxx
parse_CMD_RADIO() : AWT_input_mask.cxx
parse_env_mem_definition() : adsocket.cxx
parse_helix_list() : ED4_detect_bad_ali.cxx
parse_intype() : main.cxx
parse_key_word() : prototypes.h , util.cxx
parse_names_into_gene_struct() : PT_main.cxx
parse_outtype() : main.cxx
parse_quoted_string() : recmac.cxx
parse_RDP_comment() : rdp_info.cxx , prototypes.h
parse_remark() : TreeNode.h
parse_treelabel() : TreeNode.h
parse_type() : main.cxx
parseCommandLine() : arb_probe.cxx
parseCounter() : Importer.cxx
parseCSV() : adGene.cxx
parseFontString() : AW_xfont.cxx
parseformat() : readseq.c
parseInfix() : Location.cxx
parseLocation() : Location.cxx , Location.h
parseLocationList() : Location.cxx
ParseMenus() : GDE_ParseMenu.cxx
parsePosition() : Location.cxx
parsePositions() : adGene.cxx
parseSection() : arb_help2xml.cxx
parsesize() : AW_xfont.cxx
part2SimpleLocation() : Location.cxx
part_of() : client.c
partial_mtoe() : embl.cxx
partof() : insdel.cxx
PARTptr : CT_hash.hxx
PartSet : CT_hash.hxx
partSignificance() : fast_aligner.cxx
PartVector : CT_hash.hxx
PASS : FilteredExport.h
PASS_2_OUT : gb_aci_impl.h
path_buf : adsocket.cxx
path_toggle : adsocket.cxx
PATHS : arb_help2xml.cxx
patrate : arb_dnarates.cxx
patsite : arb_dnarates.cxx
pattern : arb_dnarates.cxx
pattern2str() : ED4_search.cxx
patweight : arb_dnarates.cxx
paup_print_header() : paup.cxx
paup_print_header_counters() : paup.cxx
paup_print_headerstart() : paup.cxx
paup_print_line() : paup.cxx
paup_verify_name() : paup.cxx
PC_Context : probe_design.cxx
PD : probe_design.cxx
pd_assert : probe_local.hxx
pd_edit_ptserver_log() : probe_design.cxx
pd_export_pt_server() : probe_design.cxx
PD_Formatter4design : PT_new_design.cxx
pd_get_the_gene_names() : probe_design.cxx
pd_get_the_names() : probe_design.cxx
pd_gl : arb_probe.cxx
pd_kill_pt_server() : probe_design.cxx
pd_query_pt_server() : probe_design.cxx
pd_start_pt_server() : probe_design.cxx
pd_view_server_console() : probe_design.cxx
PDEST_POSTSCRIPT : AWT_canio.cxx
PDEST_PREVIEW : AWT_canio.cxx
PDEST_PRINTER : AWT_canio.cxx
pdrw : primer_design.cxx
PELEM : CT_part.hxx
PELEM_cmp() : CT_part.cxx
PERCENT : chartable.cxx
PERCENT_MIN_DEFAULT : ali_global.cxx
percentMarked() : TreeDisplay.cxx
perform_block_operation_on_part_of_sequence() : ED4_block.cxx
perform_block_operation_on_whole_sequence() : ED4_block.cxx
perform_query_cb() : db_query.cxx
performmode_relative_id() : GEN_map.cxx
PERIOD : genbank.cxx
PERL_IN_MINIPERLMAIN_C : perlmain_source.c
PERMIT_SUBSTITUTION : gb_aci.h
PERMITTED : xferset.cxx
permutations() : group_search.cxx
PFOLD_AWAR_ENABLE : ed4_protein_2nd_structure.hxx
PFOLD_AWAR_MATCH_METHOD : ed4_protein_2nd_structure.hxx
PFOLD_AWAR_PAIR_TEMPLATE : ed4_protein_2nd_structure.hxx
PFOLD_AWAR_SAI_FILTER : ed4_protein_2nd_structure.hxx
PFOLD_AWAR_SELECTED_SAI : ed4_protein_2nd_structure.hxx
PFOLD_AWAR_SYMBOL_TEMPLATE : ed4_protein_2nd_structure.hxx
PFOLD_AWAR_SYMBOL_TEMPLATE_2 : ed4_protein_2nd_structure.hxx
pfold_dealloc : ED4_protein_2nd_structure.cxx
PFOLD_MATCH_METHOD : ed4_protein_2nd_structure.hxx
pfold_match_method_awars : ED4_protein_2nd_structure.cxx
PFOLD_MATCH_METHOD_COUNT : ed4_protein_2nd_structure.hxx
PFOLD_MATCH_TYPE : ed4_protein_2nd_structure.hxx
pfold_match_type_awars : ED4_protein_2nd_structure.cxx , ed4_protein_2nd_structure.hxx
PFOLD_MATCH_TYPE_COUNT : ed4_protein_2nd_structure.hxx
pfold_pair_chars : ED4_protein_2nd_structure.cxx , ed4_protein_2nd_structure.hxx
PFOLD_PAIR_CHARS_2 : ed4_protein_2nd_structure.hxx
PFOLD_PAIRS : ed4_protein_2nd_structure.hxx
pfold_pairs : ED4_protein_2nd_structure.cxx , ed4_protein_2nd_structure.hxx
PFOLD_STRUCTURE : ed4_protein_2nd_structure.hxx
PG_get_first_probe() : ps_pg_tree_functions.hxx
PG_get_next_probe() : ps_pg_tree_functions.hxx
PG_initSpeciesMaps() : ps_pg_specmap.hxx
PG_NumberSpecies() : ps_pg_specmap.hxx
PG_read_probe() : ps_pg_tree_functions.hxx
PG_SpeciesID2SpeciesName() : ps_pg_specmap.hxx
PG_SpeciesName2SpeciesID() : ps_pg_specmap.hxx
ph_assert : phylo.hxx , NJ.hxx
ph_calc_filter_cb() : PH_display.cxx , PH_display.hxx
ph_check_initialized() : PH_display.cxx , PH_display.hxx
PH_create_filter_variables() : PH_filt.cxx , phylo.hxx
PH_create_filter_window() : PH_filt.cxx , phylo.hxx
PH_create_ml_multiline_SAI() : PH_main.cxx
PH_DB_CACHE_SIZE : phylo.hxx
ph_exit() : PH_main.cxx
PH_GC_BOTTOM_DRAG : phylo.hxx
PH_GC_BOTTOM_TEXT : phylo.hxx
PH_GC_DRAG : phylo.hxx
PH_GC_MARKER : phylo.hxx
PH_GC_NOT_MARKER : phylo.hxx
PH_GC_SEQUENCE : phylo.hxx
PH_save_markerline() : PH_main.cxx
PH_save_ml_cb() : PH_main.cxx
PH_save_ml_multiline_cb() : PH_main.cxx
PH_timer() : PH_filt.cxx
ph_view_species_cb() : PH_display.cxx , PH_display.hxx
PHE : AP_seq_simple_pro.hxx
phyl_filter_config_mapping : PH_filt.cxx
PHYLIP : fun.h
phylip_print_line() : phylip.cxx
PI : defs.h
PIX_FONT : AW_xfont.cxx
PIXELS_INCH : arb_a2ps.c
PIXMAP_SIZE : AW_Xm.cxx
pixmapPath() : AW_button.cxx
PLAIN_TEXT : arb_help2xml.cxx
PLOT : ColumnStat_2_gnuplot.cxx
PLOT_AND_VIEW : ColumnStat_2_gnuplot.cxx
PLOT_CLEANUP : ColumnStat_2_gnuplot.cxx
PlotMode : ColumnStat_2_gnuplot.cxx
PlotType : ColumnStat_2_gnuplot.cxx
plotTypeDescription : ColumnStat_2_gnuplot.cxx
plotTypeName : ColumnStat_2_gnuplot.cxx
Plugins : item_shader.cxx
plural() : arb_string.h
pm_assert : probe_match_parser.cxx
PM_Context : probe_design.cxx
pn_assert : AP_codon_table.cxx , AP_codon_table.hxx , AP_pro_a_nucs.cxx
pngBind() : glpng.c , glpng.h
pngLoad() : glpng.c
pngLoadF() : glpng.c
POLL_TIMEOUT : AW_status.cxx
POLOFFOFF : RNA3D_Renderer.cxx
POLOFFON : RNA3D_Renderer.cxx
POLYGON : RNA3D_Textures.hxx
polygon_contains() : AW_device_click.cxx
popdown_search_window_cb() : NT_group_search.cxx
popup_detached_experiment_window() : EXP_interface.cxx
popup_detached_gene_window() : GEN_interface.cxx
popup_detached_speciesOrganismWindow() : ui_species.cxx
popup_field_selection() : item_sel_list.cxx
popup_gene_location_editor() : GEN_interface.cxx
popup_group_clusters_window() : DI_clusters.cxx
popup_group_search_window() : NT_group_search.cxx , NT_group_search.h
popup_interrupt_macro_window_cb() : macro_gui.cxx
popup_macro_window() : macro_gui.cxx
popup_match_window_cb() : probe_design.cxx
popup_new_experiment_window() : EXP_interface.cxx
popup_new_gene_window() : GEN_interface.cxx
popup_new_main_window() : NT_extern.cxx
popup_new_speciesOrganismWindow() : ui_species.cxx
popup_probe_design_result_window() : probe_design.cxx
popup_rule_definition_window() : xfergui.cxx
popup_ruleset_admin_window() : xfergui.cxx
popup_SelectionListSpec_cb() : AWT_sel_boxes.cxx
popup_single_field_transfer_window() : MG_species.cxx
popup_speciesOrganismWindow() : ui_species.cxx
popup_tree_admin_window() : ad_trees.cxx , ad_trees.h
popupSaiProbeMatchWindow() : probe_design.cxx
PORTRAIT_HEADER : arb_a2ps.c
pos1 : ClustalV.cxx
pos2 : ClustalV.cxx
POS_WIDTH : GEN_interface.cxx
PositionPairList : arb_gene_probe.cxx
positiontype : SoTl.hxx
PositionType : ed4_class.hxx
PosMap : SEC_drawn_pos.hxx
prd_assert : PRD_Globals.hxx
PRD_MAX_SEQUENCE_POS : PRD_Globals.hxx
PRD_Sequence_Pos : PRD_Globals.hxx
PRD_strdup() : PRD_Item.cxx
preCreateTempfile() : GDE_event.cxx
pred_is_ali_gap : seq_search.cxx
predef_prg() : db_query.cxx
predefined_consensus_config : ED4_no_class.cxx
predefined_flag_setup : ED4_flags.cxx
predefined_group_search : NT_group_search.cxx
predefined_helix_configs : AW_helix.cxx
predefined_saiColorDefinitions : SaiProbeVisualization.cxx
predefinedMatrixConfig : DI_view_matrix.cxx
PREFER_ISO10646 : AW_xfont.cxx
preferredForCommand() : TreeDisplay.cxx
prefix_before() : arb_proto_2_xsub.cxx
PREFIX_KL : pars_awars.h
PREFIX_KL_DYNAMIC : pars_awars.h
PREFIX_KL_STATIC : pars_awars.h
PREFIX_OPTI : pars_awars.h
PREFIX_RAND : pars_awars.h
prefix_width : arb_a2ps.c
PREFIXLEN : names.cxx
prepare_and_get_selected_itemfield() : item_sel_list.cxx , item_sel_list.h
PREPARE_MARK_NONFINAL_CLASS : cxxforward.h
primenuc : ureadseq.c
primer_design_config_mapping : primer_design.cxx
primer_design_event_check_gc_factor() : primer_design.cxx
primer_design_event_check_primer_length() : primer_design.cxx
primer_design_event_check_temp_factor() : primer_design.cxx
primer_design_event_go() : primer_design.cxx
primer_design_event_init() : primer_design.cxx
primer_design_event_update_memory() : primer_design.cxx
primer_print() : arb_primer.cxx
PRINT : mkptypes.cxx
PRINT2BUFFER : aisc_parser.c , arb_msg.cxx
PRINT2BUFFER_CHECKED : arb_msg.cxx
print_awars_created : AWT_canio.cxx
print_binaries : arb_a2ps.c
print_error : aisc_def.h
print_extern : mkptypes.cxx
print_file() : arb_a2ps.c
print_man() : ali_main.cxx
print_page_prologue() : arb_a2ps.c
print_pos() : AW_print.cxx
print_prologue() : arb_a2ps.c
print_promotions() : mkptypes.cxx
print_prototype_parse_error() : arb_proto_2_xsub.cxx
print_ptr : ClustalV.cxx
print_standard_prologue() : arb_a2ps.c
print_tabs() : aisc_commands.c
print_warning : aisc_def.h
print_XML_Text_expanding_links() : arb_help2xml.cxx
print_xs_default() : arb_proto_2_xsub.cxx
PRINTABLE : fun.h
printable_print_line() : printable.cxx
printchar() : arb_a2ps.c
printdata : arb_dnarates.cxx
printdate : arb_a2ps.c
PrintDest : AWT_canio.cxx
printf_error : aisc_def.h
printf_warning : aisc_def.h
printFile() : AWT_asciiprint.cxx
printpage() : arb_a2ps.c
PrintQueue : aisc.c
PRM_BUFFERSIZE : arb_primer.cxx
PRO : AP_seq_simple_pro.hxx
PROB_NOT_DEF : base.h
PROBE : SaiProbeVisualization.hxx
probe_2_readable() : probe.h
probe_collection_close() : probe_design.cxx
probe_collection_load_prompt() : probe_design.cxx
probe_collection_save_prompt() : probe_design.cxx
probe_collection_update_parameters() : probe_design.cxx
probe_common_send_data() : probe_design.cxx
probe_compress_sequence() : PT_io.cxx , pt_prototypes.h
probe_design_event() : probe_design.cxx
probe_design_mapping_def : probe_design.cxx
probe_design_send_data() : probe_design.cxx
probe_forget_matches_event() : probe_design.cxx
probe_match() : PT_match.cxx , pt_prototypes.h
probe_match_all_event() : probe_design.cxx
probe_match_event() : probe_design.cxx
probe_match_event_using_awars() : probe_design.cxx
probe_match_mapping_def : probe_design.cxx
probe_match_send_data() : probe_design.cxx
probe_match_update_probe_list() : probe_design.cxx
probe_match_with_specificity_edit_event() : probe_design.cxx
probe_match_with_specificity_enum_callback() : probe_design.cxx
probe_match_with_specificity_event() : probe_design.cxx
PROBE_PREFIX : SaiProbeVisualization.hxx
PROBE_PREFIX_LENGTH : SaiProbeVisualization.cxx
probe_read_data_base() : PT_io.cxx , pt_prototypes.h
PROBE_SUFFIX : SaiProbeVisualization.hxx
PROBE_SUFFIX_LENGTH : SaiProbeVisualization.cxx
probelength_changed_cb() : probe_design.cxx
probelist : MP_Window.cxx
ProbeSortMode : PT_new_design.cxx
PROCESS : defs.h
processLength() : arb_dnarates.cxx
programDate : arb_dnarates.cxx
programName : arb_dnarates.cxx
programVersion : arb_dnarates.cxx
prologue : arb_a2ps.c
promote_extern_c : mkptypes.cxx
promote_lines : mkptypes.cxx
promotion_tag : mkptypes.cxx
promotion_tag_len : mkptypes.cxx
promotions : mkptypes.cxx
PROMPT_AWAR_PREFIX : AWT_prompt.cxx
PROP_ALIGNMENT_DATA : ed4_defs.hxx
PROP_CONSENSUS_RELEVANT : ed4_defs.hxx
PROP_CURSOR_ALLOWED : ed4_defs.hxx
PROP_DRAGABLE : ed4_defs.hxx
PROP_DYNA_RESIZE : ed4_defs.hxx
PROP_HORIZONTAL : ed4_defs.hxx
PROP_IS_FOLDED : ed4_defs.hxx
PROP_IS_HANDLE : ed4_defs.hxx
PROP_IS_MANAGER : ed4_defs.hxx
PROP_IS_TERMINAL : ed4_defs.hxx
PROP_MOVABLE : ed4_defs.hxx
PROP_NONE : ed4_defs.hxx
PROP_SELECTABLE : ed4_defs.hxx
PROP_VERTICAL : ed4_defs.hxx
propertyName() : ED4_root.cxx
prot2AP_PROTEIN : AP_seq_protein.cxx
prot2test : AP_seq_protein.cxx
prot_idx : AP_seq_protein.cxx
prot_mindist : AP_seq_protein.cxx
protect_corruption_error() : ad_save_load.cxx
PROTEIN : GDE_def.h
PROTEINS_TO_TEST : AP_seq_protein.cxx
protMatches() : AP_codon_table.cxx
protonly : ureadseq.c
provide_insDelBuffer() : insdel.cxx
provoke_core_dump : arb_assert.h
PRTERR : client.c
PRTLENGTH : printable.cxx
PS_apply_path_to_bitmap() : ps_find_probes.cxx
PS_ascend() : ps_find_probes.cxx
ps_assert : ps_assert.hxx
PS_assert_inverse_path() : ps_convert_db.cxx
PS_assert_path() : ps_convert_db.cxx
PS_calc_min_sum_of_square_distances_to_average() : ps_eval_candidates.cxx
PS_calc_next_speciesid_sets() : ps_find_probes.cxx
PS_calc_sums_for_nodepath() : ps_eval_candidates.cxx
PS_calc_temp() : ps_eval_candidates.cxx
PS_Candidate2NodeSetPair : ps_eval_candidates.cxx
PS_Candidate2NodeSetPairByLengthMap : ps_eval_candidates.cxx
PS_CandidateByGainMap : ps_candidate.hxx
PS_CandidateByGainMapCIter : ps_candidate.hxx
PS_CandidateByGainMapCRIter : ps_candidate.hxx
PS_CandidateByGainMapIter : ps_candidate.hxx
PS_CandidateByGainMapRIter : ps_candidate.hxx
PS_CandidatePtr : ps_candidate.hxx
PS_CandidateSet : ps_candidate.hxx
PS_CandidateSetCIter : ps_candidate.hxx
PS_CandidateSetCRIter : ps_candidate.hxx
PS_CandidateSetIter : ps_candidate.hxx
PS_CandidateSetRIter : ps_candidate.hxx
PS_CandidateSPtr : ps_candidate.hxx
PS_descend() : ps_find_probes.cxx
PS_detect_probe_length() : ps_convert_db.cxx
PS_detect_weak_differences() : ps_detect_weak_differences.cxx
PS_detect_weak_differences_stepdown() : ps_detect_weak_differences.cxx
PS_eval_node_paths() : ps_eval_candidates.cxx
PS_extract_probe_data() : ps_convert_db.cxx
PS_filling_level() : ps_find_probes.cxx
PS_find_probe_for_sets() : ps_find_probes.cxx
PS_find_probes() : ps_find_probes.cxx
PS_find_probes_for_pairs() : ps_detect_weak_differences.cxx
ps_fontinfo : AW_xfont.cxx
PS_get_first_node() : ps_pg_tree_functions.hxx
PS_get_leaf_candidates() : ps_eval_candidates.cxx , ps_find_probes.cxx
PS_get_next_candidates() : ps_find_probes.cxx
PS_get_next_candidates_descend() : ps_find_probes.cxx
PS_get_next_node() : ps_pg_tree_functions.hxx
PS_get_node_paths() : ps_eval_candidates.cxx
PS_get_probe_for_path() : ps_get_probes.cxx
PS_GNUPlot() : ps_find_probes.cxx
PS_make_map_for_candidate() : ps_find_probes.cxx
PS_NodeMap : ps_node.hxx
PS_NodeMapConstIterator : ps_node.hxx
PS_NodeMapConstRIterator : ps_node.hxx
PS_NodeMapIterator : ps_node.hxx
PS_NodeMapRIterator : ps_node.hxx
PS_NodePtr : ps_node.hxx
PS_NodeSet : ps_eval_candidates.cxx
PS_print_and_evaluate_map() : ps_detect_weak_differences.cxx
PS_print_map_ranges() : ps_find_probes.cxx
PS_print_paths() : ps_arb2asciipaths.cxx , ps_my2asciipaths.cxx
PS_print_set_ranges() : ps_find_probes.cxx
PS_print_time_diff() : ps_tools.hxx , ps_tools.cxx
PS_printProbe() : ps_node.hxx
PS_ProbePtr : ps_node.hxx
PS_ProbeSet : ps_node.hxx
PS_ProbeSetCIter : ps_node.hxx
PS_ProbeSetIter : ps_node.hxx
PS_ProbeSetPtr : ps_node.hxx
PS_remove_bad_probes() : ps_eval_candidates.cxx
PS_test_candidate_on_bitmap() : ps_find_probes.cxx
PS_test_sets_on_path() : ps_find_probes.cxx
PSEUDO_FIELD_ALL_FIELDS : item_sel_list.h
PSEUDO_FIELD_ALL_FIELDS_REC : item_sel_list.h
PSEUDO_FIELD_ANY_FIELD : item_sel_list.h
PSEUDO_FIELD_ANY_FIELD_REC : item_sel_list.h
pseudo_species_hash_key() : adGene.cxx
psg : PT_main.cxx , probe.h
psg_initialized : PT_main.cxx
PSM_QUALITY : PT_new_design.cxx
PSM_SEQUENCE : PT_new_design.cxx
PT1_BASE_SIZE : probe_tree.h
PT1_CHAIN : probe_tree.h
PT1_CHAIN_LONG_HEAD_SIZE : probe_tree.h
PT1_CHAIN_SHORT_HEAD_SIZE : probe_tree.h
PT1_EMPTY_LEAF_SIZE : probe_tree.h
PT1_EMPTY_NODE_SIZE : probe_tree.h
PT1_LEAF : probe_tree.h
PT1_LEAF_SIZE : probe_tree.h
PT1_MAX_CHAIN_ENTRY_SIZE : probe_tree.h
PT1_MIN_CHAIN_ENTRY_SIZE : probe_tree.h
PT1_NODE : probe_tree.h
PT1_NODE_SIZE : probe_tree.h
PT1_NODE_WITHSONS_SIZE : probe_tree.h
PT1_SAVED : probe_tree.h
PT1_TYPE : probe_tree.h
PT1_UNDEF : probe_tree.h
PT2_CHAIN : probe_tree.h
PT2_LEAF : probe_tree.h
PT2_NODE : probe_tree.h
PT2_TYPE : probe_tree.h
PT_A : probe.h
PT_abs_2_ecoli_rel() : PT_io.cxx , pt_prototypes.h
PT_add_to_chain() : PT_prefixtree.cxx , pt_prototypes.h
pt_assert : PT_tools.h , ptclean.cxx
pt_assert_stage : probe.h
pt_assert_valid_chain_stage1 : probe.h
PT_B_UNDEF : probe.h
PT_base : probe.h
PT_BASE_A : ColumnStat_2_gnuplot.cxx
PT_BASE_C : ColumnStat_2_gnuplot.cxx
PT_BASE_G : ColumnStat_2_gnuplot.cxx
PT_BASE_TU : ColumnStat_2_gnuplot.cxx
PT_BASES : probe.h
pt_build_pos_to_weight() : PT_match.cxx
PT_build_species_hash() : pt_prototypes.h , PT_io.cxx
PT_C : probe.h
PT_chain_has_valid_entries() : PT_prefixtree.cxx , pt_prototypes.h
PT_CHAIN_NTERM : probe_tree.h
PT_change_leaf_to_node() : pt_prototypes.h , PT_prefixtree.cxx
PT_change_link_in_father() : PT_prefixtree.cxx
PT_create_leaf() : pt_prototypes.h , PT_prefixtree.cxx
pt_destroy_locs() : PT_extern.c
pt_destroy_socket() : PT_extern.c
PT_dump_POS_TREE() : PT_debug.cxx , pt_prototypes.h
PT_dump_POS_TREE_recursive() : PT_debug.cxx , pt_prototypes.h
PT_dump_POS_TREE_to_file() : PT_debug.cxx
PT_dump_tree_statistics() : pt_prototypes.h , PT_debug.cxx
PT_exit() : PT_main.cxx
PT_exit_psg() : PT_main.cxx , pt_prototypes.h
pt_export_error() : PT_etc.cxx , pt_prototypes.h
pt_export_error_if() : pt_prototypes.h , PT_etc.cxx
PT_find_exProb() : PT_findEx.cxx , pt_prototypes.h
PT_forwhole_chain() : pt_prototypes.h , probe_tree.h , pt_prototypes.h
PT_G : probe.h
PT_GA_RATIO : ColumnStat_2_gnuplot.cxx
PT_GC_RATIO : ColumnStat_2_gnuplot.cxx
pt_get_gc_content() : PT_new_design.cxx
pt_get_temperature() : PT_new_design.cxx
PT_GLOBAL : probe_tree.h , PT_prefixtree.cxx
PT_HELIX : ColumnStat_2_gnuplot.cxx
PT_index_dump() : pt_prototypes.h , PT_debug.cxx
pt_init_bond_matrix() : PT_new_design.cxx , PT_extern.c , pt_prototypes.h
PT_init_cache_sizes() : PT_prefixtree.cxx , pt_prototypes.h
PT_INIT_CHAIN_SIZE : probe_tree.h
PT_init_input_data() : pt_prototypes.h , PT_io.cxx
pt_init_main_struct() : PT_main.cxx
PT_init_map() : PT_main.cxx
PT_init_psg() : pt_prototypes.h , PT_main.cxx
pt_init_socket() : PT_extern.c
PT_leaf_size() : probe_tree.h
PT_leaf_to_chain() : PT_prefixtree.cxx , pt_prototypes.h
PT_LEAST_FREQUENT_BASE : ColumnStat_2_gnuplot.cxx
PT_MATCH_TYPE : probe.h
PT_MATCH_TYPE_INTEGER : probe.h
PT_MATCH_TYPE_WEIGHTED : probe.h
PT_MATCH_TYPE_WEIGHTED_PLUS_POS : probe.h
PT_MAX_PARTITION_DEPTH : probe.h
PT_MIN_TREE_HEIGHT : probe.h
PT_MOST_FREQUENT_BASE : ColumnStat_2_gnuplot.cxx
PT_N : probe.h
PT_node_size() : probe_tree.h
PT_NODE_SON_COUNT : probe_tree.h
PT_PLOT_TYPES : ColumnStat_2_gnuplot.cxx
PT_PNTR : PT_tools.h
PT_POS_TREE_HEIGHT : probe.h
PT_prepare_data() : PT_io.cxx , pt_prototypes.h
PT_prepare_species_sequence() : PT_io.cxx
PT_QU : probe.h
PT_RATE : ColumnStat_2_gnuplot.cxx
PT_read_big() : PT_tools.h
PT_READ_CHAIN_ENTRY_stage_2() : probe_tree.h
PT_read_char() : PT_tools.h
PT_read_compact_nat() : PT_tools.h
PT_read_int() : PT_tools.h
PT_read_pointer() : PT_tools.h
PT_read_short() : PT_tools.h
PT_read_son() : probe_tree.h
PT_read_son< POS_TREE1 >() : probe_tree.h
PT_read_son< POS_TREE2 >() : probe_tree.h
PT_read_void_pointer() : PT_tools.h
PT_SECOND_FREQUENT_BASE : ColumnStat_2_gnuplot.cxx
pt_server_different : MultiProbe.hxx , MP_main.cxx
PT_SERVER_MAGIC : probe.h
PT_SERVER_VERSION : probe.h
PT_SERVERNAME_LENGTH : AWT_sel_boxes.cxx
PT_SERVERNAME_SELLIST_WIDTH : AWT_sel_boxes.cxx
PT_SHORT_SIZE : probe_tree.h
pt_sort_compare_match() : PT_match.cxx
pt_sort_match_list() : PT_match.cxx
PT_start_design() : PT_new_design.cxx , pt_prototypes.h
PT_T : probe.h
PT_THIRD_FREQUENT_BASE : ColumnStat_2_gnuplot.cxx
PT_TT_RATIO : ColumnStat_2_gnuplot.cxx
PT_UNKNOWN : ColumnStat_2_gnuplot.cxx
PT_unknown_names() : pt_prototypes.h , PT_etc.cxx
PT_write_big() : PT_tools.h
PT_WRITE_CHAIN_ENTRY() : probe_tree.h
PT_write_char() : PT_tools.h
PT_write_compact_nat() : PT_tools.h
PT_write_int() : PT_tools.h
PT_write_pointer() : PT_tools.h
PT_write_short() : PT_tools.h
PTD_debug_nodes() : pt_prototypes.h
PTD_delete_saved_node() : PT_prefixtree.cxx , pt_prototypes.h
PTD_put_byte() : pt_prototypes.h , PT_prefixtree.cxx
PTD_put_int() : pt_prototypes.h , PT_prefixtree.cxx
PTD_put_longlong() : pt_prototypes.h
PTD_put_short() : pt_prototypes.h , PT_prefixtree.cxx
PTD_read_leafs_from_disk() : pt_prototypes.h , PT_prefixtree.cxx
PTD_save_lower_tree() : PT_buildtree.cxx , pt_prototypes.h
PTD_save_upper_tree() : PT_buildtree.cxx , pt_prototypes.h
PTD_set_object_to_saved_status() : PT_prefixtree.cxx
PTD_write_chain_to_disk() : PT_prefixtree.cxx
PTD_write_leafs_to_disk() : pt_prototypes.h , PT_prefixtree.cxx
PTD_write_node_to_disk() : PT_prefixtree.cxx
PTD_write_tip_to_disk() : PT_prefixtree.cxx
PTM_ELEMS_PER_BLOCK : PT_mem.h
PTM_magic : PT_mem.h
PTM_MANAGED_MEMORY : PT_mem.h
PTM_MAX_SIZE : PT_mem.h
PTM_MIN_SIZE : PT_mem.h
PTM_TABLE_COUNT : PT_mem.h
PTM_TABLE_SIZE : PT_mem.h
ptnd_compare_quality() : PT_new_design.cxx
ptnd_compare_sequence() : PT_new_design.cxx
ptpd_read_names() : PT_etc.cxx , pt_prototypes.h
PTR_DIFF : admap.cxx
ptserver() : TestEnvironment.cxx
PTSERVER_BIN_MB : PT_partition.h
ptserver_directory_info_command() : probe_design.cxx
ptserver_gene() : TestEnvironment.cxx
ptserverlog_changed_cb() : AWT_sel_boxes.cxx
pure_text_terminal_spec : ED4_terminal.cxx
push_all_upnode_sequences() : AP_tree_nlen.cxx
push_partial() : PARS_main.cxx
pushParagraph() : arb_help2xml.cxx
put_compact_nat() : PT_prefixtree.cxx
putelem() : GDE_arbdb_io.cxx , GDE_proto.h
PV_AA_BOX : ed4_ProteinViewer.hxx
PV_AA_CODE : ed4_ProteinViewer.hxx
PV_AA_NAME : ed4_ProteinViewer.hxx
PV_AA_Terminals4Species : ED4_ProteinViewer.cxx
PV_AddCallBacks() : ED4_ProteinViewer.cxx
PV_AddCorrespondingOrfTerminals() : ed4_ProteinViewer.hxx , ED4_ProteinViewer.cxx
PV_AddNewAAseqTerminals() : ED4_ProteinViewer.cxx
PV_AddOrfTerminalsToLoadedSpecies() : ED4_ProteinViewer.cxx , ed4_ProteinViewer.hxx
PV_ALL : ED4_ProteinViewer.cxx
PV_CallBackFunction() : ed4_ProteinViewer.hxx , ED4_ProteinViewer.cxx
PV_ComplementarySequence() : ED4_ProteinViewer.cxx
PV_CreateAllTerminals() : ED4_ProteinViewer.cxx
PV_CreateAwars() : ed4_ProteinViewer.hxx , ED4_ProteinViewer.cxx
PV_CURSOR : ED4_ProteinViewer.cxx
PV_DisplayAminoAcidNames() : ED4_ProteinViewer.cxx
PV_HideAllTerminals() : ED4_ProteinViewer.cxx
PV_HideTerminal() : ED4_ProteinViewer.cxx
PV_LookForNewTerminals() : ED4_ProteinViewer.cxx
PV_ManageTerminalDisplay() : ED4_ProteinViewer.cxx
PV_ManageTerminals() : ED4_ProteinViewer.cxx
PV_MARKED : ED4_ProteinViewer.cxx
PV_PrintMissingDBentryInformation() : ED4_ProteinViewer.cxx
PV_RefreshDisplay() : ED4_ProteinViewer.cxx
PV_RefreshProtViewDisplay() : ED4_ProteinViewer.cxx
PV_RefreshWindow() : ED4_ProteinViewer.cxx , ed4_ProteinViewer.hxx
PV_SaveData() : ED4_ProteinViewer.cxx
PV_SELECTED : ED4_ProteinViewer.cxx
PV_SequenceUpdate_CB() : ed4_ProteinViewer.hxx , ED4_ProteinViewer.cxx
PV_UnHideTerminal() : ED4_ProteinViewer.cxx
PV_WriteTranslatedSequenceToDB() : ED4_ProteinViewer.cxx
PVP_calculate() : pvp.h , pvp.cxx
pythag_() : eispack.cxx