GEN_interface.cxx File Reference

#include "GEN_local.hxx"
#include <db_scanner.hxx>
#include <db_query.h>
#include <dbui.h>
#include <item_sel_list.h>
#include <info_window.h>
#include <awt_sel_boxes.hxx>
#include <awt_prompt.hxx>
#include <aw_awar_defs.hxx>
#include <aw_root.hxx>
#include <aw_msg.hxx>
#include <aw_question.hxx>
#include <adGene.h>
#include <Location.h>
#include <arb_strarray.h>
#include <arb_strbuf.h>

Include dependency graph for GEN_interface.cxx:

Go to the source code of this file.

Classes
class	LocationEditor

Macros
#define	AWAR_GENE_DEST   "tmp/gene/dest"
#define	AD_F_ALL   AWM_ALL
#define	GLE_POS1   "pos1"
#define	GLE_POS2   "pos2"
#define	GLE_CERT1   "cert1"
#define	GLE_CERT2   "cert2"
#define	GLE_COMPLEMENT   "complement"
#define	GLE_JOINABLE   "joinable"
#define	GLE_READABLE   "location"
#define	GLE_STATUS   "status"

Functions
static void	GEN_select_gene (GBDATA *, AW_root *aw_root, const char *item_name)
static char *	gen_get_gene_id (GBDATA *, GBDATA *gb_gene)
static GBDATA *	gen_find_gene_by_id (GBDATA *gb_main, const char *id)
GB_ERROR	GEN_mark_organism_or_corresponding_organism (GBDATA *gb_species, int *)
void	gen_restore_old_species_marks (GBDATA *gb_main)
static GBDATA *	GEN_get_first_gene_data (GBDATA *gb_main, AW_root *aw_root, QUERY_RANGE range)
static GBDATA *	GEN_get_next_gene_data (GBDATA *gb_gene_data, QUERY_RANGE range)
static GBDATA *	GEN_get_current_gene (GBDATA *gb_main, AW_root *aw_root)
static void	add_selected_gene_changed_cb (AW_root *aw_root, const RootCallback &cb)
static GBDATA *	first_gene_in_range (GBDATA *gb_gene_data, QUERY_RANGE range)
static GBDATA *	next_gene_in_range (GBDATA *gb_prev, QUERY_RANGE range)
static void	refresh_displayed_genes ()
ItemSelector &	GEN_get_selector ()
static void	GEN_species_name_changed_cb (AW_root *awr, GBDATA *gb_main)
static void	auto_select_pseudo_species (AW_root *awr, GBDATA *gb_main, const char *organism, const char *gene)
static void	GEN_update_GENE_CONTENT (GBDATA *gb_main, AW_root *awr)
static void	GEN_update_combined_cb (AW_root *awr, GBDATA *gb_main)
void	GEN_create_awars (AW_root *aw_root, AW_default aw_def, GBDATA *gb_main)
GBDATA *	GEN_get_current_organism (GBDATA *gb_main)
static GBDATA *	get_current_gene_data (GBDATA *gb_main)
static GB_ERROR	gene_rename_handler (const char *dest, GBDATA *gb_main)
static GB_ERROR	gene_copy_handler (const char *dest, GBDATA *gb_main)
static void	gene_rename_cb (AW_window *aww, GBDATA *gb_main)
static void	gene_copy_cb (AW_window *aww, GBDATA *gb_main)
const char *	elemOr (ConstStrArray &a, size_t i, const char *Default)
char	elemOr (const char *a, size_t len, size_t i, char Default)
GB_ERROR	update_location_from_GEN_position (LocationEditor *loced, const GEN_position *gp)
static void	GLE_update_from_detailFields (AW_root *, LocationEditor *loced)
static SmartCharPtr	sizetarray2string (const size_t *array, int size)
SmartCharPtr	dupSizedPart (const unsigned char *in, int size)
SmartCharPtr	dupComplement (const unsigned char *in, int size)
static void	GLE_update_from_location (AW_root *, LocationEditor *loced)
static void	GLE_revcomp_cb (AW_window *, LocationEditor *loced)
static void	gene_changed_cb (AW_root *aw_root, LocationEditor *loced)
static void	boundloc_changed_cb (AW_root *aw_root, LocationEditor *loced)
static void	gene_create_cb (AW_window *aww, GBDATA *gb_main, LocationEditor *loced)
static AW_window *	get_gene_create_or_locationEdit_window (AW_root *root, bool createGene, GBDATA *gb_main)
static void	popup_gene_location_editor (AW_window *aww, GBDATA *gb_main)
static AW_window *	create_gene_create_window (AW_root *root, GBDATA *gb_main)
static void	gene_delete_cb (AW_window *aww, GBDATA *gb_main)
static void	GEN_create_field_items (AW_window *aws, GBDATA *gb_main)
static AW_window *	popup_new_gene_window (AW_root *aw_root, GBDATA *gb_main, int detach_id)
static void	popup_detached_gene_window (AW_window *aw_parent, const InfoWindow *infoWin)
void	GEN_popup_gene_infowindow (AW_root *aw_root, GBDATA *gb_main)
AW_window *	GEN_create_gene_query_window (AW_root *aw_root, GBDATA *gb_main)

Variables
static char *	old_species_marks = NULp
static struct MutableItemSelector	GEN_item_selector
static QUERY::DbQuery *	GLOBAL_gene_query = NULp
const int	NAME_WIDTH = 33
const int	POS_WIDTH = NAME_WIDTH
const int	CER_WIDTH = POS_WIDTH/2
const int	LOC_WIDTH = 53
static int	loc_update_running = 0

Macro Definition Documentation

#define AWAR_GENE_DEST   "tmp/gene/dest"

Definition at line 38 of file GEN_interface.cxx.

Referenced by GEN_create_awars(), gene_create_cb(), and get_gene_create_or_locationEdit_window().

#define AD_F_ALL   AWM_ALL

Definition at line 42 of file GEN_interface.cxx.

Referenced by GEN_create_field_items(), and popup_new_gene_window().

#define GLE_POS1   "pos1"

Definition at line 468 of file GEN_interface.cxx.

Referenced by LocationEditor::create_GEN_position_from_fields(), LocationEditor::createEditFields(), and GLE_update_from_location().

#define GLE_POS2   "pos2"

Definition at line 469 of file GEN_interface.cxx.

Referenced by LocationEditor::create_GEN_position_from_fields(), LocationEditor::createEditFields(), and GLE_update_from_location().

#define GLE_CERT1   "cert1"

Definition at line 470 of file GEN_interface.cxx.

Referenced by LocationEditor::create_GEN_position_from_fields(), LocationEditor::createEditFields(), and GLE_update_from_location().

#define GLE_CERT2   "cert2"

Definition at line 471 of file GEN_interface.cxx.

Referenced by LocationEditor::create_GEN_position_from_fields(), LocationEditor::createEditFields(), and GLE_update_from_location().

#define GLE_COMPLEMENT   "complement"

Definition at line 472 of file GEN_interface.cxx.

Referenced by LocationEditor::create_GEN_position_from_fields(), LocationEditor::createEditFields(), and GLE_update_from_location().

#define GLE_JOINABLE   "joinable"

Definition at line 473 of file GEN_interface.cxx.

Referenced by LocationEditor::create_GEN_position_from_fields(), LocationEditor::createEditFields(), and GLE_update_from_location().

#define GLE_READABLE   "location"

Definition at line 474 of file GEN_interface.cxx.

Referenced by LocationEditor::createEditFields(), GLE_update_from_location(), LocationEditor::revcomp(), and update_location_from_GEN_position().

#define GLE_STATUS   "status"

Definition at line 475 of file GEN_interface.cxx.

Referenced by LocationEditor::createEditFields(), and LocationEditor::set_status().

Function Documentation

static void GEN_select_gene ( GBDATA *  , AW_root *  aw_root, const char *  item_name  )

static

Definition at line 46 of file GEN_interface.cxx.

References ARB_strdup(), aw_message(), AW_root::awar(), AWAR_GENE_NAME, AWAR_ORGANISM_NAME, GBS_global_string(), and AW_awar::write_string().

static char* gen_get_gene_id ( GBDATA *  , GBDATA *  gb_gene  )

static

Definition at line 65 of file GEN_interface.cxx.

References GB_get_grandfather(), GBS_global_string_copy(), and GBT_get_name_or_description().

static GBDATA* gen_find_gene_by_id ( GBDATA *  gb_main, const char *  id  )

static

Definition at line 70 of file GEN_interface.cxx.

References ARB_strdup(), GEN_find_gene(), GEN_find_organism(), NULp, and result.

GB_ERROR GEN_mark_organism_or_corresponding_organism	(	GBDATA *	gb_species,
		int *
	)

Definition at line 88 of file GEN_interface.cxx.

References error(), GB_write_flag(), GEN_find_origin_organism(), GEN_is_organism(), GEN_is_pseudo_gene_species(), GEN_organism_not_found(), and NULp.

Referenced by EXP_get_first_experiment_data(), and GEN_get_first_gene_data().

void gen_restore_old_species_marks ( GBDATA *  gb_main )

inline

Definition at line 109 of file GEN_interface.cxx.

References GBT_restore_marked_species().

Referenced by GEN_get_first_gene_data(), and GEN_get_next_gene_data().

static GBDATA* GEN_get_first_gene_data ( GBDATA *  gb_main, AW_root *  aw_root, QUERY_RANGE  range  )

static

Definition at line 116 of file GEN_interface.cxx.

References AW_root::awar(), AWAR_ORGANISM_NAME, error(), GB_export_error(), GBT_store_marked_species(), GBT_with_stored_species(), gen_assert, GEN_expect_gene_data(), GEN_find_organism(), GEN_first_marked_organism(), GEN_first_marked_pseudo_species(), GEN_first_organism(), GEN_mark_organism_or_corresponding_organism(), gen_restore_old_species_marks(), NULp, QUERY_ALL_ITEMS, QUERY_CURRENT_ITEM, QUERY_MARKED_ITEMS, and AW_awar::read_string().

static GBDATA* GEN_get_next_gene_data ( GBDATA *  gb_gene_data, QUERY_RANGE  range  )

static

Definition at line 156 of file GEN_interface.cxx.

References GB_get_father(), GB_get_root(), gen_assert, GEN_expect_gene_data(), GEN_next_marked_organism(), GEN_next_organism(), gen_restore_old_species_marks(), NULp, QUERY_ALL_ITEMS, QUERY_CURRENT_ITEM, and QUERY_MARKED_ITEMS.

static GBDATA* GEN_get_current_gene ( GBDATA *  gb_main, AW_root *  aw_root  )

static

Definition at line 184 of file GEN_interface.cxx.

References AW_root::awar(), AWAR_GENE_NAME, GEN_find_gene(), GEN_get_current_organism(), NULp, and AW_awar::read_string().

Referenced by boundloc_changed_cb(), first_gene_in_range(), GEN_update_GENE_CONTENT(), gene_changed_cb(), and gene_delete_cb().

static void add_selected_gene_changed_cb ( AW_root *  aw_root, const RootCallback &  cb  )

static

Definition at line 197 of file GEN_interface.cxx.

References AW_awar::add_callback(), MutableItemSelector::add_selection_changed_cb, AW_root::awar(), AWAR_GENE_NAME, and ORGANISM_get_selector().

static GBDATA* first_gene_in_range ( GBDATA *  gb_gene_data, QUERY_RANGE  range  )

static

Definition at line 202 of file GEN_interface.cxx.

References GB_first_marked(), GB_get_root(), GEN_first_gene_rel_gene_data(), GEN_get_current_gene(), NULp, QUERY_ALL_ITEMS, QUERY_CURRENT_ITEM, QUERY_MARKED_ITEMS, and AW_root::SINGLETON.

static GBDATA* next_gene_in_range ( GBDATA *  gb_prev, QUERY_RANGE  range  )

static

Definition at line 211 of file GEN_interface.cxx.

References GEN_next_gene(), GEN_next_marked_gene(), NULp, QUERY_ALL_ITEMS, QUERY_CURRENT_ITEM, and QUERY_MARKED_ITEMS.

static void refresh_displayed_genes ( )

static

Definition at line 222 of file GEN_interface.cxx.

References GEN_refresh_all_windows().

ItemSelector& GEN_get_selector

(

)

Definition at line 247 of file GEN_interface.cxx.

References GEN_item_selector.

Referenced by create_colorize_genes_window(), GEN_create_field_items(), GEN_create_gene_query_window(), GEN_open_nds_window(), CheckedConsistencies::perform_item_checks(), and popup_new_gene_window().

static void GEN_species_name_changed_cb ( AW_root *  awr, GBDATA *  gb_main  )

static

Definition at line 249 of file GEN_interface.cxx.

References AW_root::awar(), AWAR_GENE_NAME, AWAR_ORGANISM_NAME, AWAR_SPECIES_NAME, GBT_find_species(), GEN_is_pseudo_gene_species(), GEN_origin_gene(), GEN_origin_organism(), AW_awar::read_string(), ta, and AW_awar::write_string().

Referenced by GEN_create_awars().

static void auto_select_pseudo_species ( AW_root *  awr, GBDATA *  gb_main, const char *  organism, const char *  gene  )

static

Definition at line 266 of file GEN_interface.cxx.

References AW_root::awar(), AWAR_SPECIES_NAME, GBT_get_name_or_description(), GEN_find_pseudo_species(), NULp, ta, and AW_awar::write_string().

Referenced by GEN_update_combined_cb().

static void GEN_update_GENE_CONTENT ( GBDATA *  gb_main, AW_root *  awr  )

static

Definition at line 275 of file GEN_interface.cxx.

References ARB_strndup(), AW_root::awar(), AWAR_GENE_CONTENT, AWAR_GENE_NAME, buffer, GB_await_error(), GB_read_char_pntr(), GBT_find_sequence(), GBT_read_gene_sequence(), gen_assert, GEN_get_current_gene(), GEN_get_current_organism(), GENOM_ALIGNMENT, AW_awar::read_string(), ta, and AW_awar::write_string().

Referenced by GEN_update_combined_cb().

static void GEN_update_combined_cb ( AW_root *  awr, GBDATA *  gb_main  )

static

Definition at line 333 of file GEN_interface.cxx.

References auto_select_pseudo_species(), AW_root::awar(), AWAR_COMBINED_GENE_NAME, AWAR_GENE_NAME, AWAR_ORGANISM_NAME, GBS_global_string(), GEN_update_GENE_CONTENT(), AW_awar::read_string(), and AW_awar::write_string().

Referenced by GEN_create_awars().

void GEN_create_awars	(	AW_root *	aw_root,
		AW_default	aw_def,
		GBDATA *	gb_main
	)

Definition at line 350 of file GEN_interface.cxx.

References AW_awar::add_callback(), AWAR_COMBINED_GENE_NAME, AWAR_GENE_CONTENT, AWAR_GENE_DEST, AWAR_GENE_NAME, AWAR_ORGANISM_NAME, AWAR_SPECIES_NAME, AW_root::awar_string(), GEN_species_name_changed_cb(), GEN_update_combined_cb(), and NULp.

Referenced by nt_create_all_awars().

GBDATA* GEN_get_current_organism

(

GBDATA *

gb_main

)

Definition at line 363 of file GEN_interface.cxx.

References AW_root::awar(), AWAR_ORGANISM_NAME, GBT_find_species(), AW_awar::read_string(), and AW_root::SINGLETON.

Referenced by EXP_get_current_experiment(), GEN_get_current_gene(), GEN_perform_command(), GEN_update_GENE_CONTENT(), get_current_experiment_data(), and get_current_gene_data().

static GBDATA* get_current_gene_data ( GBDATA *  gb_main )

static

Definition at line 370 of file GEN_interface.cxx.

References GEN_expect_gene_data(), GEN_get_current_organism(), and NULp.

Referenced by gene_copy_handler(), gene_create_cb(), and gene_rename_handler().

static GB_ERROR gene_rename_handler ( const char *  dest, GBDATA *  gb_main  )

static

Definition at line 381 of file GEN_interface.cxx.

References AW_root::awar(), AWAR_GENE_NAME, error(), GB_await_error(), GB_begin_transaction(), GB_end_transaction(), GB_search(), GB_STRING, GB_write_string(), GBS_global_string(), GEN_find_gene_rel_gene_data(), get_current_gene_data(), NULp, AW_awar::read_char_pntr(), AW_root::SINGLETON, and AW_awar::write_string().

Referenced by gene_rename_cb().

static GB_ERROR gene_copy_handler ( const char *  dest, GBDATA *  gb_main  )

static

Definition at line 417 of file GEN_interface.cxx.

References AW_root::awar(), AWAR_GENE_NAME, error(), GB_await_error(), GB_begin_transaction(), GB_copy_dropProtectMarksAndTempstate(), GB_create_container(), GB_end_transaction(), GBS_global_string(), GBT_write_string(), GEN_find_gene_rel_gene_data(), get_current_gene_data(), AW_awar::read_char_pntr(), AW_root::SINGLETON, and AW_awar::write_string().

Referenced by gene_copy_cb().

static void gene_rename_cb ( AW_window *  aww, GBDATA *  gb_main  )

static

Definition at line 449 of file GEN_interface.cxx.

References AW_root::awar(), AWAR_GENE_NAME, AWT_activate_prompt(), gene_rename_handler(), AW_window::get_root(), and AW_awar::read_char_pntr().

Referenced by popup_new_gene_window().

static void gene_copy_cb ( AW_window *  aww, GBDATA *  gb_main  )

static

Definition at line 454 of file GEN_interface.cxx.

References AW_root::awar(), AWAR_GENE_NAME, AWT_activate_prompt(), gene_copy_handler(), AW_window::get_root(), and AW_awar::read_char_pntr().

Referenced by popup_new_gene_window().

const char* elemOr ( ConstStrArray &  a, size_t  i, const char *  Default  )

inline

Definition at line 552 of file GEN_interface.cxx.

References CharPtrArray::size().

Referenced by LocationEditor::create_GEN_position_from_fields().

char elemOr ( const char *  a, size_t  len, size_t  i, char  Default  )

inline

Definition at line 555 of file GEN_interface.cxx.

GB_ERROR update_location_from_GEN_position ( LocationEditor *  loced, const GEN_position *  gp  )

inline

Definition at line 611 of file GEN_interface.cxx.

References Location::as_string(), error(), GBS_static_string(), gen_assert, GLE_READABLE, LocationEditor::loc_awar(), NULp, to_Location(), and AW_awar::write_string().

Referenced by gene_changed_cb(), and GLE_update_from_detailFields().

static void GLE_update_from_detailFields ( AW_root *  , LocationEditor *  loced  )

static

Definition at line 626 of file GEN_interface.cxx.

References LocationEditor::create_GEN_position_from_fields(), error(), NULp, LocationEditor::set_pos(), LocationEditor::set_status(), and update_location_from_GEN_position().

static SmartCharPtr sizetarray2string ( const size_t *  array, int  size  )

static

Definition at line 646 of file GEN_interface.cxx.

References GBS_strstruct::cut_tail(), GBS_strstruct::put(), GBS_strstruct::putlong(), and GBS_strstruct::release().

Referenced by GLE_update_from_location().

SmartCharPtr dupSizedPart ( const unsigned char *  in, int  size  )

inline

Definition at line 655 of file GEN_interface.cxx.

References ARB_strpartdup().

Referenced by GLE_update_from_location().

SmartCharPtr dupComplement ( const unsigned char *  in, int  size  )

inline

Definition at line 659 of file GEN_interface.cxx.

Referenced by GLE_update_from_location().

static void GLE_update_from_location ( AW_root *  , LocationEditor *  loced  )

static

Definition at line 668 of file GEN_interface.cxx.

References LocationEditor::awar_charp_value(), GEN_position::complement, Location::create_GEN_position(), dupComplement(), dupSizedPart(), error(), GBS_static_string(), gen_assert, GLE_CERT1, GLE_CERT2, GLE_COMPLEMENT, GLE_JOINABLE, GLE_POS1, GLE_POS2, GLE_READABLE, GEN_position::joinable, LocationEditor::loc_awar(), NULp, parseLocation(), GEN_position::parts, LocationEditor::set_pos(), LocationEditor::set_status(), sizetarray2string(), GEN_position::start_pos, GEN_position::start_uncertain, GEN_position::stop_pos, GEN_position::stop_uncertain, AW_awar::write_int(), and AW_awar::write_string().

static void GLE_revcomp_cb ( AW_window *  , LocationEditor *  loced  )

static

Definition at line 703 of file GEN_interface.cxx.

References LocationEditor::revcomp().

Referenced by LocationEditor::createEditFields().

static void gene_changed_cb ( AW_root *  aw_root, LocationEditor *  loced  )

static

Definition at line 738 of file GEN_interface.cxx.

References error(), GEN_get_current_gene(), GEN_read_position(), GEN_use_uncertainties(), LocationEditor::get_gb_main(), NULp, LocationEditor::set_pos(), LocationEditor::set_status(), and update_location_from_GEN_position().

Referenced by boundloc_changed_cb(), and get_gene_create_or_locationEdit_window().

static void boundloc_changed_cb ( AW_root *  aw_root, LocationEditor *  loced  )

static

Definition at line 751 of file GEN_interface.cxx.

References aw_message(), error(), GB_end_transaction_show_error(), gb_main, GB_push_transaction(), gen_assert, GEN_get_current_gene(), GEN_write_position(), gene_changed_cb(), LocationEditor::get_gb_main(), and LocationEditor::get_pos().

Referenced by get_gene_create_or_locationEdit_window().

static void gene_create_cb ( AW_window *  aww, GBDATA *  gb_main, LocationEditor *  loced  )

static

Definition at line 772 of file GEN_interface.cxx.

References aw_message(), AW_root::awar(), AWAR_GENE_DEST, AWAR_GENE_NAME, error(), GB_await_error(), GB_begin_transaction(), GB_end_transaction_show_error(), GB_have_error(), GBS_global_string(), gen_assert, GEN_find_gene_rel_gene_data(), GEN_find_or_create_gene_rel_gene_data(), GEN_write_position(), get_current_gene_data(), LocationEditor::get_pos(), AW_window::get_root(), AW_window::hide(), AW_awar::read_string(), and AW_awar::write_string().

Referenced by get_gene_create_or_locationEdit_window().

static AW_window* get_gene_create_or_locationEdit_window ( AW_root *  root, bool  createGene, GBDATA *  gb_main  )

static

Definition at line 809 of file GEN_interface.cxx.

References AW_awar::add_callback(), LocationEditor::add_pos_changed_cb(), AW_POPDOWN(), AWAR_COMBINED_GENE_NAME, AWAR_GENE_DEST, AWAR_GENE_NAME, AWAR_ORGANISM_NAME, boundloc_changed_cb(), LocationEditor::createEditFields(), gen_assert, gene_changed_cb(), gene_create_cb(), makeHelpCallback(), NULp, and AW_awar::touch().

Referenced by create_gene_create_window(), and popup_gene_location_editor().

static void popup_gene_location_editor ( AW_window *  aww, GBDATA *  gb_main  )

static

Definition at line 864 of file GEN_interface.cxx.

References AW_window::activate(), gb_main, get_gene_create_or_locationEdit_window(), and AW_window::get_root().

Referenced by popup_new_gene_window().

static AW_window* create_gene_create_window ( AW_root *  root, GBDATA *  gb_main  )

static

Definition at line 868 of file GEN_interface.cxx.

References get_gene_create_or_locationEdit_window().

Referenced by popup_new_gene_window().

static void gene_delete_cb ( AW_window *  aww, GBDATA *  gb_main  )

static

Definition at line 872 of file GEN_interface.cxx.

References aw_ask_sure(), aw_message(), GB_transaction::close(), error(), GB_delete(), GEN_get_current_gene(), AW_window::get_root(), and ta.

Referenced by popup_new_gene_window().

static void GEN_create_field_items ( AW_window *  aws, GBDATA *  gb_main  )

static

Definition at line 885 of file GEN_interface.cxx.

References AD_F_ALL, DBUI::create_field_create_window(), DBUI::create_field_delete_window(), DBUI::create_fields_reorder_window(), MutableBoundItemSel::gb_main, gen_assert, GEN_get_selector(), gene_field_selection_list_unhide_all_cb(), gene_field_selection_list_update_cb(), AW_window::insert_menu_topic(), AW_window::local_id(), and AW_window::sep______________().

Referenced by popup_new_gene_window().

static AW_window * popup_new_gene_window ( AW_root *  aw_root, GBDATA *  gb_main, int  detach_id  )

static

Definition at line 911 of file GEN_interface.cxx.

References AD_F_ALL, InfoWindow::add_detach_area(), AW_window::at(), InfoWindow::attach_selected_item(), AW_POPDOWN(), AW_window::button_length(), AW_window::callback(), DbScanner::create(), AW_window::create_button(), create_gene_create_window(), AW_window::create_menu(), DB_KEYVIEWER, GEN_create_field_items(), GEN_create_gene_query_window(), GEN_get_selector(), gene_copy_cb(), gene_delete_cb(), gene_rename_cb(), InfoWindowRegistry::infowin, DBUI::init_info_window(), AW_window::insert_menu_topic(), InfoWindow::is_maininfo(), AW_window::load_xfig(), InfoWindowRegistry::localize_scanner_id(), makeHelpCallback(), popup_detached_gene_window(), popup_gene_location_editor(), InfoWindowRegistry::registerInfoWindow(), AW_window::sep______________(), and AW_window::show().

Referenced by GEN_popup_gene_infowindow(), and popup_detached_gene_window().

static void popup_detached_gene_window ( AW_window *  aw_parent, const InfoWindow *  infoWin  )

static

Definition at line 899 of file GEN_interface.cxx.

References InfoWindowRegistry::allocate_detach_id(), InfoWindowRegistry::find_reusable_of_same_type_as(), InfoWindow::get_gbmain(), AW_window::get_root(), InfoWindowRegistry::infowin, popup_new_gene_window(), and InfoWindow::reuse().

Referenced by popup_new_gene_window().

void GEN_popup_gene_infowindow	(	AW_root *	aw_root,
		GBDATA *	gb_main
	)

Definition at line 960 of file GEN_interface.cxx.

References InfoWindow::MAIN_WINDOW, NULp, popup_new_gene_window(), and InfoWindowRegistry::reactivate().

Referenced by GEN_create_gene_query_window(), GEN_create_genes_submenu(), and GEN_graphic::handle_command().

AW_window* GEN_create_gene_query_window	(	AW_root *	aw_root,
		GBDATA *	gb_main
	)

Definition at line 970 of file GEN_interface.cxx.

References AW_window::at(), AW_POPDOWN(), AWAR_SPECIES_NAME, AWAR_TREE, AWM_ALL, AW_window::button_length(), QUERY::query_spec::by_pos_fig, AW_window::callback(), QUERY::query_spec::config_pos_fig, QUERY::query_spec::count_pos_fig, AW_window::create_button(), AW_window::create_menu(), QUERY::create_query_box(), QUERY::query_spec::do_delete_pos_fig, QUERY::query_spec::do_mark_nt_pos_fig, QUERY::query_spec::do_mark_pos_fig, QUERY::query_spec::do_query_pos_fig, QUERY::query_spec::do_refresh_pos_fig, QUERY::query_spec::do_set_pos_fig, QUERY::query_spec::do_unmark_nt_pos_fig, QUERY::query_spec::do_unmark_pos_fig, QUERY::query_spec::ere_pos_fig, gb_main, QUERY::query_spec::gb_main, GB_USERFLAG_QUERY, GEN_get_selector(), GEN_popup_gene_infowindow(), AW_window_simple_menu::init(), AW_window::insert_menu_topic(), QUERY::query_spec::key_pos_fig, AW_window::load_xfig(), makeHelpCallback(), NULp, QUERY::query_spec::open_parser_pos_fig, QUERY::query_spec::popup_info_window, QUERY::query_spec::qbox_pos_fig, QUERY::query_spec::query_pos_fig, QUERY::query_spec::result_pos_fig, QUERY::search_duplicated_field_content(), QUERY::query_spec::select_bit, QUERY::query_spec::species_name, QUERY::query_spec::tree_name, QUERY::query_spec::use_menu, and QUERY::query_spec::where_pos_fig.

Referenced by GEN_create_genes_submenu(), GEN_map_window::init(), and popup_new_gene_window().

Variable Documentation

char* old_species_marks = NULp

static

Definition at line 107 of file GEN_interface.cxx.

struct MutableItemSelector GEN_item_selector

static

Initial value:

= { 
    QUERY_ITEM_GENES,
    GEN_select_gene,
    gen_get_gene_id,
    gen_find_gene_by_id,
    gene_field_selection_list_update_cb,
    -1, 
    CHANGE_KEY_PATH_GENES,
    "gene",
    "genes",
    "name",
    GEN_get_first_gene_data,
    GEN_get_next_gene_data,
    first_gene_in_range,
    next_gene_in_range,
    GEN_get_current_gene,
    add_selected_gene_changed_cb,
    &ORGANISM_get_selector(), GB_get_grandfather,
    refresh_displayed_genes,
}

Definition at line 226 of file GEN_interface.cxx.

Referenced by GEN_get_selector().

QUERY::DbQuery* GLOBAL_gene_query = NULp

static

Definition at line 379 of file GEN_interface.cxx.

const int NAME_WIDTH = 33

Definition at line 463 of file GEN_interface.cxx.

const int POS_WIDTH = NAME_WIDTH

Definition at line 464 of file GEN_interface.cxx.

const int CER_WIDTH = POS_WIDTH/2

Definition at line 465 of file GEN_interface.cxx.

const int LOC_WIDTH = 53

Definition at line 466 of file GEN_interface.cxx.

int loc_update_running = 0

static

Definition at line 609 of file GEN_interface.cxx.