#include "item_sel_list.h"
#include <arbdbt.h>
#include <aw_root.hxx>
#include <aw_awars.hxx>

Include dependency graph for species.cxx:

Functions
static GBDATA *	get_first_species_data (GBDATA gb_main, AW_root , QUERY_RANGE)

static GBDATA *	get_next_species_data (GBDATA *, QUERY_RANGE)

static void	select_species (GBDATA , AW_root aw_root, const char *item_name)

static void	select_organism (GBDATA , AW_root aw_root, const char *item_name)

static GBDATA *	get_selected_species (GBDATA gb_main, AW_root aw_root)

static GBDATA *	get_selected_organism (GBDATA gb_main, AW_root aw_root)

static void	add_selected_species_changed_cb (AW_root *aw_root, const RootCallback &cb)

static char *	get_species_id (GBDATA , GBDATA gb_species)

static GBDATA *	find_species_by_id (GBDATA gb_main, const char id)

static GBDATA *	get_first_species (GBDATA *gb_species_data, QUERY_RANGE range)

static GBDATA *	get_next_species (GBDATA *gb_prev, QUERY_RANGE range)

static GBDATA *	get_first_organism (GBDATA *gb_species_data, QUERY_RANGE range)

static GBDATA *	get_next_organism (GBDATA *gb_prev, QUERY_RANGE range)

static void	refresh_displayed_species ()

ItemSelector &	SPECIES_get_selector ()

ItemSelector &	ORGANISM_get_selector ()

Variables
static struct MutableItemSelector	ITEM_species

static struct MutableItemSelector	ITEM_organism

Function Documentation

static GBDATA* get_first_species_data	(	GBDATA *	gb_main,
		AW_root *	,
		QUERY_RANGE
	)

static

Definition at line 18 of file species.cxx.

References GBT_get_species_data().

static GBDATA* get_next_species_data	(	GBDATA *	,
		QUERY_RANGE
	)

static

Definition at line 21 of file species.cxx.

References NULp.

static void select_species	(	GBDATA *	,
		AW_root *	aw_root,
		const char *	item_name
	)

static

Definition at line 25 of file species.cxx.

References AW_root::awar(), AWAR_SPECIES_NAME, and AW_awar::write_string().

static void select_organism	(	GBDATA *	,
		AW_root *	aw_root,
		const char *	item_name
	)

static

Definition at line 28 of file species.cxx.

References AW_root::awar(), AWAR_ORGANISM_NAME, and AW_awar::write_string().

static GBDATA* get_selected_species	(	GBDATA *	gb_main,
		AW_root *	aw_root
	)

static

Definition at line 32 of file species.cxx.

References AW_root::awar(), AWAR_SPECIES_NAME, GBT_find_species(), NULp, and AW_awar::read_char_pntr().

Referenced by get_first_species().

static GBDATA* get_selected_organism	(	GBDATA *	gb_main,
		AW_root *	aw_root
	)

static

Definition at line 36 of file species.cxx.

References AW_root::awar(), AWAR_ORGANISM_NAME, GEN_find_organism(), NULp, and AW_awar::read_char_pntr().

Referenced by get_first_organism().

static void add_selected_species_changed_cb	(	AW_root *	aw_root,
		const RootCallback &	cb
	)

static

Definition at line 41 of file species.cxx.

References AW_awar::add_callback(), AW_root::awar(), and AWAR_SPECIES_NAME.

static char* get_species_id	(	GBDATA *	,
		GBDATA *	gb_species
	)

static

Definition at line 45 of file species.cxx.

References GB_entry(), GB_read_as_string(), and NULp.

static GBDATA* find_species_by_id	(	GBDATA *	gb_main,
		const char *	id
	)

static

Definition at line 51 of file species.cxx.

References GBT_find_species().

static GBDATA* get_first_species	(	GBDATA *	gb_species_data,
		QUERY_RANGE	range
	)

static

Definition at line 55 of file species.cxx.

References GB_get_root(), GBT_first_marked_species_rel_species_data(), GBT_first_species_rel_species_data(), get_selected_species(), NULp, QUERY_ALL_ITEMS, QUERY_CURRENT_ITEM, QUERY_MARKED_ITEMS, and AW_root::SINGLETON.

static GBDATA* get_next_species	(	GBDATA *	gb_prev,
		QUERY_RANGE	range
	)

static

Definition at line 64 of file species.cxx.

References GBT_next_marked_species(), GBT_next_species(), NULp, QUERY_ALL_ITEMS, QUERY_CURRENT_ITEM, and QUERY_MARKED_ITEMS.

static GBDATA* get_first_organism	(	GBDATA *	gb_species_data,
		QUERY_RANGE	range
	)

static

Definition at line 73 of file species.cxx.

References GB_get_root(), gb_main, GEN_first_marked_organism(), GEN_first_organism(), get_selected_organism(), NULp, QUERY_ALL_ITEMS, QUERY_CURRENT_ITEM, QUERY_MARKED_ITEMS, and AW_root::SINGLETON.

static GBDATA* get_next_organism	(	GBDATA *	gb_prev,
		QUERY_RANGE	range
	)

static

Definition at line 83 of file species.cxx.

References GEN_next_marked_organism(), GEN_next_organism(), NULp, QUERY_ALL_ITEMS, QUERY_CURRENT_ITEM, and QUERY_MARKED_ITEMS.

static void refresh_displayed_species ( )

static

Definition at line 93 of file species.cxx.

References AW_root::awar(), AWAR_TREE_REFRESH, AW_root::SINGLETON, and AW_awar::touch().

ItemSelector& SPECIES_get_selector ( )

Definition at line 139 of file species.cxx.

References ITEM_species.

Referenced by calc_and_update_alignment_errors_cb(), create_colorize_species_window(), create_group_species_by_field_window(), create_mark_by_refentries_window(), create_mg_check_fields_window(), create_mg_merge_tagged_fields_window(), create_next_neighbours_listed_window(), RefEntries::create_refentries_window(), DBUI::create_species_query_window(), createDisplayField_window(), createMergeSimilarSpeciesWindow(), ArbImporter::detectAvailableFields(), ED4_configure_species_flags(), ED4_popup_detect_bad_alignment_window(), get_importedSpecies_selector(), DBUI::insert_field_admin_menuitems(), mark_action(), mergeSimilarSpecies(), mg_check_field_cb(), mg_initialize_species_selectors(), NDS_create_window(), NT_create_compare_taxonomy_window(), NT_create_resort_window(), NT_create_species_join_window(), CheckedConsistencies::perform_item_checks(), popup_new_speciesOrganismWindow(), popup_single_field_transfer_window(), SpeciesFlag::prepare_itemfield(), ExportFieldScanner::scanFields(), MergeFieldScanner::scanFields(), st_check_cb(), st_ml_add_quality_string_to_species(), and STAT_create_chimera_check_window().

ItemSelector& ORGANISM_get_selector ( )

Definition at line 140 of file species.cxx.

References ITEM_organism.

Referenced by add_selected_experiment_changed_cb(), add_selected_gene_changed_cb(), create_colorize_organisms_window(), and popup_new_speciesOrganismWindow().

Variable Documentation

struct MutableItemSelector ITEM_species

static

Initial value:

= {
    QUERY_ITEM_SPECIES,
    select_species,
    get_species_id,
    find_species_by_id,
    species_field_selection_list_update_cb,
    12,
    CHANGE_KEY_PATH,
    "species",
    "species",
    "name",
    get_first_species_data,
    get_next_species_data,
    get_first_species,
    get_next_species,
    get_selected_species,
    add_selected_species_changed_cb,
    NULp, NULp,
    refresh_displayed_species,
}

Definition at line 97 of file species.cxx.

Referenced by SPECIES_get_selector().

struct MutableItemSelector ITEM_organism

static

Initial value:

= {
    QUERY_ITEM_ORGANISM,
    select_organism,
    get_species_id,
    find_species_by_id,
    species_field_selection_list_update_cb,
    12,
    CHANGE_KEY_PATH,
    "organism",
    "organisms",
    "name",
    get_first_species_data,
    get_next_species_data,
    get_first_organism,
    get_next_organism,
    get_selected_organism,
    add_selected_species_changed_cb,
    NULp, NULp,
    refresh_displayed_species,
}

Definition at line 118 of file species.cxx.

Referenced by ORGANISM_get_selector().

Functions

Variables

Function Documentation

Variable Documentation