arb_export_sequences.cxx File Reference

#include <stdio.h>
#include <string.h>
#include <unistd.h>
#include <arbdb.h>
#include <arbdbt.h>
#include <arb_file.h>
#include <AP_filter.hxx>
#include <seqio.hxx>
#include <insdel.h>
#include <string>
#include <vector>
#include <fstream>
#include <map>
#include <iostream>
#include <sstream>
#include <set>
#include <iterator>
#include <algorithm>

Include dependency graph for arb_export_sequences.cxx:

Go to the source code of this file.

Classes
struct	equals< T >
class	Writer
class	MultiFastaWriter
class	FINAL_TYPE< SEQTYPE >
	xml element More...
class	FINAL_TYPE< SEQTYPE >
	xml element More...

Functions
static void	aw_status (double d)
static void	help ()
static set< string >	read_accession_file (const char *file)
int	main (int argc, char **argv)

Function Documentation

static void aw_status ( double  d )

static

Definition at line 44 of file arb_export_sequences.cxx.

Referenced by MultiFastaWriter::addSequence(), and FINAL_TYPE< SEQTYPE >::addSequence().

static void help ( )

static

Definition at line 260 of file arb_export_sequences.cxx.

Referenced by ARB_main(), List< Type >::insert_after_current(), List< Type >::insert_as_first(), List< Type >::insert_as_last(), List< Type >::insert_before_current(), List< Type >::insert_sorted_by_address_of_object(), main(), probe_combi_statistic::swap(), and List< Type >::~List().

static set<string> read_accession_file ( const char *  file )

static

Definition at line 279 of file arb_export_sequences.cxx.

References line.

Referenced by main().

int main	(	int	argc,
		char **	argv
	)

Definition at line 302 of file arb_export_sequences.cxx.

References Writer::addSequence(), error(), Writer::finish(), format(), GB_await_error(), GB_close(), GB_find(), GB_is_regularfile(), GB_open(), GB_read_char_pntr(), GB_release(), GBS_static_string(), GBT_first_species(), GBT_get_default_alignment(), GBT_next_species(), Writer::get_error(), help(), NULp, Writer::ok(), read_accession_file(), and SEARCH_CHILD.