ARB: TOOLS/arb_consensus_tree.cxx File Reference

ARB

TOOLS

#include <CT_ctree.hxx>
#include <TreeRead.h>
#include <TreeWrite.h>
#include <arb_str.h>
#include <arb_diff.h>
#include <arb_defs.h>

Include dependency graph for arb_consensus_tree.cxx:

Go to the source code of this file.

Functions
static TreeNode *	build_consensus_tree (const CharPtrArray &input_trees, GB_ERROR &error, size_t &different_species, double weight, char *&comment)

static char *	create_tree_name (const char *savename)

static GB_ERROR	save_tree_as_newick (TreeNode tree, const char savename, const char *comment)

int	ARB_main (int argc, char *argv[])

Function Documentation

static TreeNode* build_consensus_tree	(	const CharPtrArray &	input_trees,
		GB_ERROR &	error,
		size_t &	different_species,
		double	weight,
		char *&	comment
	)

static

Definition at line 22 of file arb_consensus_tree.cxx.

References ConsensusTreeBuilder::add(), arb_assert, DOWNCAST, CharPtrArray::empty(), GB_await_error(), GB_warningf(), GBS_global_string(), ConsensusTreeBuilder::get(), ConsensusTreeBuilder::get_tree_remark(), NULp, CharPtrArray::size(), TREE_load(), and warnings.

Referenced by ARB_main().

static char* create_tree_name ( const char * savename )

static

Definition at line 61 of file arb_consensus_tree.cxx.

References ARB_strBeginsWith(), ARB_strdup(), ARB_strpartdup(), and GBS_global_string_copy().

Referenced by save_tree_as_newick().

static GB_ERROR save_tree_as_newick	(	TreeNode *	tree,
		const char *	savename,
		const char *	comment
	)

static

Definition at line 82 of file arb_consensus_tree.cxx.

References create_tree_name(), error(), GB_await_error(), GB_close(), gb_main, GB_open(), GBS_global_string(), GBT_write_tree_with_remark(), LABEL_SINGLE_QUOTES, NULp, ta, and TREE_write_Newick().

Referenced by ARB_main().

int ARB_main	(	int	argc,
		char *	argv[]
	)

Definition at line 121 of file arb_consensus_tree.cxx.

References ARB_strdup(), build_consensus_tree(), destroy(), CharPtrArray::empty(), error(), EXIT_FAILURE, EXIT_SUCCESS, GBS_global_string(), GBT_count_leafs(), NULp, ConstStrArray::put(), save_tree_as_newick(), and UNCOVERED.