ARB
Classes | Macros | Variables
NT_local.h File Reference
#include "NT_local_proto.h"
#include <arbtools.h>
#include <arb_assert.h>
#include <cstdlib>
Include dependency graph for NT_local.h:
This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes

struct  NT_global
 

Macros

#define nt_assert(cond)   arb_assert(cond)
 
#define AWAR_NTREE_MAIN_WINDOW_COUNT   "tmp/mainwin_count"
 
#define AWAR_TOPAREA_SAIS   "sai/topedit"
 
#define MAX_NT_WINDOWS   5
 
#define MAX_NT_WINDOWS_NULLINIT   NULp,NULp,NULp,NULp,NULp
 

Variables

NT_global GLOBAL
 

Macro Definition Documentation

#define nt_assert (   cond)    arb_assert(cond)

Definition at line 27 of file NT_local.h.

Referenced by Store_species::add(), GroupPenalty::addPenalty(), ScrollSynchronizer::announce_update(), awarname(), SlaveCanvas_internal::calc_best_area(), calcTaxDifference(), Dict::canDecompress(), check_argument_for_mode(), checkAndMergeFields(), colstat_2_gnuplot_cb(), CombinedPosInfo::CombinedPosInfo(), CON_insertSequences(), concatenateAlignments(), config_comment_changed_cb(), create_concatInfo_SAI(), create_consense_tree_cb(), createSelectionList(), CanvasRef::define_canvas_index(), ScrollSynchronizer::define_dependency(), validNames::determineType(), edit_SAI_description(), exit_from_merge(), SpecSetRegistry::find_best_matches_info(), SortedFreq::get(), CanvasRef::get_canvas(), GroupPenalty::get_groupsize(), CanvasRef::get_index(), get_overlay_files(), GroupPenalty::get_unknown(), GroupPenalty::GroupPenalty(), KeyInfo::isCompressed(), left_neighbour_leaf(), mapTree(), mark_action(), mark_species(), GroupMatchScorer::matchGroups(), mergeSimilarSpecies(), NT_alltree_remove_leafs(), nt_build_conf_string_rek(), NT_convert_gene_locations(), NT_create_branch_analysis_window(), nt_create_configuration(), NT_create_select_tree_window(), NT_create_syncScroll_window(), NT_createMergeSimilarSpeciesAndConcatenateWindow(), nt_disconnect_from_db(), nt_extract_configuration(), NT_fill_canvas_selection_list(), NT_fix_dict_compress(), NT_get_canvas_by_index(), NT_get_canvas_showing_tree(), NT_import_sequences(), NT_importValidNames(), nt_intro_start_existing(), nt_intro_start_import(), NT_open_mask_window(), nt_rename_configuration(), NT_suggestValidNames(), NTREE_move_tree_info(), realign_event(), SlaveCanvas::refresh_if_needed(), TREE_canvas_registry::register_canvas(), SpecSetRegistry::registerTree(), GroupPenalty::registerUnfound(), resort_data_base(), rightmost_leaf(), set_SAI_group(), GroupMatchScorer::setLimits(), SpeciesInTwoTrees::setSpecies(), setup_configmarker_config_cb(), Smoother::Smoother(), SortedFreq::SortedFreq(), SpecSet::SpecSet(), split_stat_filename(), start_main_window_after_import(), startup_gui(), startup_merge_main_window(), RSpecSet::storeBetterMatch(), swap_configs(), sync_changed_cb(), KeyInfo::testCompressed(), testDictionaryCompression(), trackable_species(), unmark_species(), update_filter_cb(), TreeRelativePosition::value(), and SpecSetRegistry::write_node_information().

#define AWAR_NTREE_MAIN_WINDOW_COUNT   "tmp/mainwin_count"
#define AWAR_TOPAREA_SAIS   "sai/topedit"
#define MAX_NT_WINDOWS   5
#define MAX_NT_WINDOWS_NULLINIT   NULp,NULp,NULp,NULp,NULp

Definition at line 33 of file NT_local.h.

Referenced by create_configuration_admin_window().

Variable Documentation

NT_global GLOBAL

Definition at line 44 of file NT_main.cxx.

Referenced by ad_move_tree_info(), ad_tree_set_security(), addSpeciesToConcatenateList(), AP_calc_pos_var_pars(), AP_create_con_expert_window(), AP_create_consensus_var(), AP_create_max_freq_window(), AP_create_pos_var_pars_window(), colstat_2_gnuplot_cb(), colstat_ali_changed_cb(), CON_calc_max_freq_cb(), CON_calculate_cb(), concatenateAlignments(), concatenateFieldsCreateNewSpecies(), config_comment_changed_cb(), copy_SAI_cb(), copy_SAI_to_species_cb(), create_colorize_species_window(), create_configuration_admin_window(), create_configuration_marker_window(), create_consense_tree_cb(), create_insertDeleteColumn_variables(), create_select_other_tree_window(), createMergeSimilarSpeciesWindow(), delete_SAI_cb(), edit_SAI_description(), export_nds_cb(), fillSelNamList(), init_config_admin_awars(), init_config_awars(), insdel_event(), insdel_sai_event(), launch_MapViewer_cb(), map_SAI_to_scanner(), mergeSimilarSpecies(), modify_configurations(), nt_build_conf_marked(), nt_build_sai_string(), nt_changesecurity(), NT_create_alignment_admin_window(), nt_create_all_awars(), NT_create_colstat_2_gnuplot_window(), nt_create_configuration(), NT_create_consense_window(), NT_create_database_optimization_window(), NT_create_dna_2_pro_window(), NT_create_extendeds_window(), NT_create_main_window(), NT_create_mask_submenu(), NT_create_realign_dna_window(), NT_create_resort_window(), NT_create_sai_from_pfold(), NT_create_searchManuallyNames_window(), NT_create_select_alignment_window(), NT_create_select_tree_window(), NT_create_species_join_window(), NT_create_startEditorOnOldConfiguration_window(), NT_create_trackAliChanges_Awars(), NT_create_trackAliChanges_window(), NT_create_twoTreeSelection(), NT_createConcatenationWindow(), NT_database_optimization(), nt_delete_configuration(), NT_deleteValidNames(), NT_exit(), nt_extract_configuration(), NT_import_sequences(), NT_importValidNames(), nt_rename_configuration(), NT_resort_data_by_phylogeny(), NT_resort_data_by_user_criteria(), NT_restart(), NT_save_as_cb(), NT_save_quick_as_cb(), NT_save_quick_cb(), NT_select_bottom_tree(), nt_seq_load_cb(), NT_suggestValidNames(), NT_undo_cb(), NT_update_marked_counter(), popup_new_main_window(), popup_tree_admin_window(), realign_event(), rename_SAI_cb(), reorder_trees_cb(), selected_config_changed_cb(), selectValidNameFromList(), sort_dtree_by_other_tree_cb(), species_rename_join(), trackAlignmentChanges(), transpro_event(), tree_load_cb(), tree_save_cb(), tree_vars_callback(), update_default_treename_cb(), and update_RangeList_cb().