awti_import.hxx File Reference

#include <aw_base.hxx>
#include <cb.h>

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Macros
#define	AWAR_IMPORT_PREFIX   "import/"
#define	AWAR_IMPORT_TMP_PREFIX   "tmp/import/"
#define	AWAR_IMPORT_GENOM_DB   AWAR_IMPORT_TMP_PREFIX "genom_db"
#define	AWAR_IMPORT_AUTOCONF   AWAR_IMPORT_PREFIX "autoconf"

Enumerations
enum	AWTI_ImportType { IMP_GENOME_FLATFILE, IMP_PLAIN_SEQUENCE }

Functions
void	AWTI_import_set_ali_and_type (AW_root *awr, const char *ali_name, const char *ali_type, GBDATA *gbmain)
void	AWTI_open_import_window (AW_root *awr, const char *def_importname, bool do_exit, GBDATA *gb_main, const RootCallback &after_import_cb)
void	AWTI_set_importDB_pointer (GBDATA *&dbPtr)
void	AWTI_cleanup_importer ()
GBDATA *	AWTI_acquire_imported_DB_and_cleanup_importer ()

Macro Definition Documentation

#define AWAR_IMPORT_PREFIX   "import/"

Definition at line 22 of file awti_import.hxx.

#define AWAR_IMPORT_TMP_PREFIX   "tmp/import/"

Definition at line 23 of file awti_import.hxx.

#define AWAR_IMPORT_GENOM_DB   AWAR_IMPORT_TMP_PREFIX "genom_db"

Definition at line 25 of file awti_import.hxx.

Referenced by AWTI_open_import_window(), create_import_awars(), NT_import_sequences(), and wants_import_genome().

#define AWAR_IMPORT_AUTOCONF   AWAR_IMPORT_PREFIX "autoconf"

Definition at line 26 of file awti_import.hxx.

Referenced by AWTI_open_import_window(), create_import_awars(), nt_seq_load_cb(), and start_main_window_after_import().

Enumeration Type Documentation

enum AWTI_ImportType

Enumerator
IMP_GENOME_FLATFILE
IMP_PLAIN_SEQUENCE

Definition at line 28 of file awti_import.hxx.

Function Documentation

void AWTI_import_set_ali_and_type	(	AW_root *	awr,
		const char *	ali_name,
		const char *	ali_type,
		GBDATA *	gbmain
	)

Definition at line 1359 of file AWTI_import.cxx.

References AW_root::awar(), AWAR_IMPORT_ALI, AWAR_IMPORT_ALI_PROTECTION, AWAR_IMPORT_ALI_TYPE, GB_clear_error(), GB_entry(), GB_read_int(), GBT_get_alignment(), GENOM_ALIGNMENT, last_ali, NULp, AW_awar::read_string(), ta, AW_awar::write_int(), and AW_awar::write_string().

Referenced by genom_flag_changed(), and NT_import_sequences().

void AWTI_open_import_window	(	AW_root *	awr,
		const char *	def_importname,
		bool	do_exit,
		GBDATA *	gb_main,
		const RootCallback &	after_import_cb
	)

Definition at line 1522 of file AWTI_import.cxx.

References AW_awar::add_callback(), ANY_DIR, AW_create_fileselection(), aw_message_if(), AW_root::awar(), AWAR_IMPORT_ALI, AWAR_IMPORT_ALI_PROTECTION, AWAR_IMPORT_ALI_TYPE, AWAR_IMPORT_AUTOCONF, AWAR_IMPORT_FILEBASE, AWAR_IMPORT_FILENAME, AWAR_IMPORT_FORMAT_DESC, AWAR_IMPORT_FORMATBASE, AWAR_IMPORT_FORMATNAME, AWAR_IMPORT_FTS, AWAR_IMPORT_GENOM_DB, AWM_ALL, AWM_EXP, AWTI_activate_import_test_window(), awti_assert, configure_macro_recording(), create_import_awars(), detect_input_format_cb(), got_macro_ability(), IMP_GENOME_FLATFILE, IMP_PLAIN_SEQUENCE, import_and_continue_cb(), import_window_close_cb(), makeHelpCallback(), MULTI_DIRS, NULp, ArbImporter::peekImportDB(), SCAN_INPUT_FIELDS, ArbImporter::set_db_4_nameserver(), update_format_description(), AW_awar::write_string(), XFER_refresh_available_fields(), and XFER_select_RuleSet().

Referenced by NT_import_sequences(), nt_intro_start_import(), and startup_gui().

void AWTI_set_importDB_pointer

(

GBDATA *&

dbPtr

)

Definition at line 1469 of file AWTI_import.cxx.

References awti_assert, and ArbImporter::peekImportDB().

Referenced by NT_import_sequences(), nt_intro_start_import(), and startup_gui().

void AWTI_cleanup_importer

(

)

Definition at line 1415 of file AWTI_import.cxx.

References importer, NULp, and ArbImporter::peekImportDB().

Referenced by AWTI_acquire_imported_DB_and_cleanup_importer(), import_window_close_cb(), NT_exit(), and nt_seq_load_cb().

GBDATA* AWTI_acquire_imported_DB_and_cleanup_importer

(

)

Definition at line 1476 of file AWTI_import.cxx.

References awti_assert, AWTI_cleanup_importer(), ArbImporter::peekImportDB(), and ArbImporter::takeImportDB().

Referenced by start_main_window_after_import().