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GEN_local.hxx File Reference
#include "GEN.hxx"
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Classes

struct  GEN_create_map_param
 

Macros

#define gen_assert(bed)   arb_assert(bed)
 
#define AWAR_COMBINED_GENE_NAME   "tmp/gene/combined_name"
 
#define AWAR_LOCAL_ORGANISM_NAME(window_nr)   GEN_window_local_awar_name("tmp/genemap/organism", window_nr)
 
#define AWAR_LOCAL_GENE_NAME(window_nr)   GEN_window_local_awar_name("tmp/genemap/gene", window_nr)
 
#define AWAR_LOCAL_ORGANISM_LOCK(window_nr)   GEN_window_local_awar_name("tmp/genemap/organism_lock", window_nr)
 
#define AWAR_LOCAL_GENE_LOCK(window_nr)   GEN_window_local_awar_name("tmp/genemap/gene_lock", window_nr)
 
#define AWAR_GENMAP_DISPLAY_TYPE(window_nr)   GEN_window_local_awar_name("genemap/display/type", window_nr)
 
#define AWAR_GENMAP_ARROW_SIZE   "genemap/display/arrow_size"
 
#define AWAR_GENMAP_SHOW_HIDDEN   "genemap/display/show_hidden"
 
#define AWAR_GENMAP_SHOW_ALL_NDS   "genemap/display/show_all_nds"
 
#define AWAR_GENMAP_BOOK_WIDTH_FACTOR   "genemap/display/book/width_factor"
 
#define AWAR_GENMAP_BOOK_BASES_PER_LINE   "genemap/display/book/base_per_line"
 
#define AWAR_GENMAP_BOOK_LINE_HEIGHT   "genemap/display/book/line_height"
 
#define AWAR_GENMAP_BOOK_LINE_SPACE   "genemap/display/book/line_space"
 
#define AWAR_GENMAP_VERTICAL_FACTOR_X   "genemap/display/vertical/factor_x"
 
#define AWAR_GENMAP_VERTICAL_FACTOR_Y   "genemap/display/vertical/factor_y"
 
#define AWAR_GENMAP_RADIAL_INSIDE   "genemap/display/radial/inside"
 
#define AWAR_GENMAP_RADIAL_OUTSIDE   "genemap/display/radial/outside"
 
#define AWAR_GENMAP_AUTO_JUMP   "genemap/options/autojump"
 

Functions

const char * GEN_window_local_awar_name (const char *awar_name, int window_nr)
 
GB_ERROR GEN_mark_organism_or_corresponding_organism (GBDATA *gb_species, int *client_data)
 
void GEN_refresh_all_windows ()
 

Macro Definition Documentation

#define gen_assert (   bed)    arb_assert(bed)

Definition at line 19 of file GEN_local.hxx.

Referenced by boundloc_changed_cb(), LocationEditor::create_GEN_position_from_fields(), do_hide_command_for_one_species(), do_mark_command_for_one_species(), EXP_get_first_experiment_data(), EXP_get_next_experiment_data(), GEN_create_field_items(), GEN_create_map(), gen_extract_gene_2_pseudoSpecies(), GEN_gene_container_cb_installer(), GEN_get_first_gene_data(), GEN_get_local_gene_data(), GEN_get_next_gene_data(), GEN_map_manager::GEN_map_manager(), GEN_mark_command(), GEN_mode_event(), GEN_open_mask_window(), GEN_perform_command(), GEN_testAndRemoveTranslations(), GEN_update_GENE_CONTENT(), gene_create_cb(), GEN_map_window::get_canvas(), get_gene_create_or_locationEdit_window(), GEN_map_window::get_graphic(), GEN_map_manager::get_map_manager(), GEN_map_manager::get_map_window(), GLE_update_from_location(), GEN_graphic::handle_command(), LocationEditor::loc_awar_name(), GEN_graphic::reinit_gen_root(), and update_location_from_GEN_position().

#define AWAR_COMBINED_GENE_NAME   "tmp/gene/combined_name"

Definition at line 23 of file GEN_local.hxx.

Referenced by GEN_create_awars(), GEN_update_combined_cb(), get_gene_create_or_locationEdit_window(), and GEN_item_type_species_selector::get_self_awar().

#define AWAR_LOCAL_ORGANISM_NAME (   window_nr)    GEN_window_local_awar_name("tmp/genemap/organism", window_nr)

Definition at line 28 of file GEN_local.hxx.

Referenced by GEN_add_local_awar_callbacks(), GEN_create_genemap_local_awars(), GEN_get_local_gene_data(), GEN_local_lock_changed_cb(), GEN_update_unlocked_organism_and_gene_awars(), GEN_map_window::init(), and GEN_graphic::reinit_gen_root().

#define AWAR_LOCAL_GENE_NAME (   window_nr)    GEN_window_local_awar_name("tmp/genemap/gene", window_nr)

Definition at line 29 of file GEN_local.hxx.

Referenced by GEN_add_local_awar_callbacks(), GEN_create_genemap_local_awars(), GEN_local_lock_changed_cb(), GEN_update_unlocked_organism_and_gene_awars(), GEN_graphic::handle_command(), GEN_map_window::init(), and GEN_graphic::reinit_gen_root().

#define AWAR_LOCAL_ORGANISM_LOCK (   window_nr)    GEN_window_local_awar_name("tmp/genemap/organism_lock", window_nr)

Definition at line 31 of file GEN_local.hxx.

Referenced by GEN_add_local_awar_callbacks(), GEN_create_genemap_local_awars(), GEN_local_lock_changed_cb(), GEN_update_unlocked_organism_and_gene_awars(), and GEN_map_window::init().

#define AWAR_LOCAL_GENE_LOCK (   window_nr)    GEN_window_local_awar_name("tmp/genemap/gene_lock", window_nr)

Definition at line 32 of file GEN_local.hxx.

Referenced by GEN_add_local_awar_callbacks(), GEN_create_genemap_local_awars(), GEN_local_lock_changed_cb(), GEN_update_unlocked_organism_and_gene_awars(), and GEN_map_window::init().

#define AWAR_GENMAP_DISPLAY_TYPE (   window_nr)    GEN_window_local_awar_name("genemap/display/type", window_nr)

Definition at line 36 of file GEN_local.hxx.

Referenced by GEN_create_genemap_local_awars(), GEN_graphic::GEN_graphic(), and GEN_set_display_style().

#define AWAR_GENMAP_ARROW_SIZE   "genemap/display/arrow_size"

Definition at line 39 of file GEN_local.hxx.

Referenced by GEN_add_global_awar_callbacks(), GEN_create_genemap_global_awars(), GEN_create_options_window(), and GEN_root::paint().

#define AWAR_GENMAP_SHOW_HIDDEN   "genemap/display/show_hidden"

Definition at line 40 of file GEN_local.hxx.

Referenced by GEN_add_global_awar_callbacks(), GEN_create_genemap_global_awars(), GEN_create_options_window(), and GEN_root::GEN_root().

#define AWAR_GENMAP_SHOW_ALL_NDS   "genemap/display/show_all_nds"

Definition at line 41 of file GEN_local.hxx.

Referenced by GEN_add_global_awar_callbacks(), GEN_create_genemap_global_awars(), GEN_create_options_window(), and GEN_root::paint().

#define AWAR_GENMAP_BOOK_WIDTH_FACTOR   "genemap/display/book/width_factor"

Definition at line 44 of file GEN_local.hxx.

Referenced by GEN_add_global_awar_callbacks(), GEN_create_genemap_global_awars(), GEN_create_options_window(), and GEN_root::paint().

#define AWAR_GENMAP_BOOK_BASES_PER_LINE   "genemap/display/book/base_per_line"

Definition at line 45 of file GEN_local.hxx.

Referenced by GEN_add_global_awar_callbacks(), GEN_create_genemap_global_awars(), GEN_create_options_window(), and GEN_root::paint().

#define AWAR_GENMAP_BOOK_LINE_HEIGHT   "genemap/display/book/line_height"

Definition at line 46 of file GEN_local.hxx.

Referenced by GEN_add_global_awar_callbacks(), GEN_create_genemap_global_awars(), GEN_create_options_window(), and GEN_root::paint().

#define AWAR_GENMAP_BOOK_LINE_SPACE   "genemap/display/book/line_space"

Definition at line 47 of file GEN_local.hxx.

Referenced by GEN_add_global_awar_callbacks(), GEN_create_genemap_global_awars(), GEN_create_options_window(), and GEN_root::paint().

#define AWAR_GENMAP_VERTICAL_FACTOR_X   "genemap/display/vertical/factor_x"

Definition at line 50 of file GEN_local.hxx.

Referenced by GEN_add_global_awar_callbacks(), GEN_create_genemap_global_awars(), GEN_create_options_window(), and GEN_root::paint().

#define AWAR_GENMAP_VERTICAL_FACTOR_Y   "genemap/display/vertical/factor_y"

Definition at line 51 of file GEN_local.hxx.

Referenced by GEN_add_global_awar_callbacks(), GEN_create_genemap_global_awars(), GEN_create_options_window(), and GEN_root::paint().

#define AWAR_GENMAP_RADIAL_INSIDE   "genemap/display/radial/inside"

Definition at line 54 of file GEN_local.hxx.

Referenced by GEN_add_global_awar_callbacks(), GEN_create_genemap_global_awars(), GEN_create_options_window(), and GEN_root::paint().

#define AWAR_GENMAP_RADIAL_OUTSIDE   "genemap/display/radial/outside"

Definition at line 55 of file GEN_local.hxx.

Referenced by GEN_add_global_awar_callbacks(), GEN_create_genemap_global_awars(), GEN_create_options_window(), and GEN_root::paint().

#define AWAR_GENMAP_AUTO_JUMP   "genemap/options/autojump"

Definition at line 58 of file GEN_local.hxx.

Referenced by GEN_create_genemap_global_awars(), GEN_create_options_window(), and GEN_jump_cb_auto().

Function Documentation

const char* GEN_window_local_awar_name ( const char *  awar_name,
int  window_nr 
)

Definition at line 167 of file GEN_map.cxx.

References GBS_global_string().

GB_ERROR GEN_mark_organism_or_corresponding_organism ( GBDATA *  gb_species,
int *  client_data 
)

Definition at line 88 of file GEN_interface.cxx.

References error(), GB_write_flag(), GEN_find_origin_organism(), GEN_is_organism(), GEN_is_pseudo_gene_species(), GEN_organism_not_found(), and NULp.

Referenced by EXP_get_first_experiment_data(), and GEN_get_first_gene_data().

void GEN_refresh_all_windows ( )

Definition at line 379 of file GEN_map.cxx.

References GEN_map_window_refresh(), and GEN_map_manager::with_all_mapped_windows().

Referenced by refresh_displayed_genes().

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