#include <cxxforward.h>#include <arbdbt.h>
Go to the source code of this file.
Classes | |
| struct | xarray |
| struct | node |
| struct | tree |
| struct | drawdata |
Macros | |
| #define | Debug 1 |
| #define | maxsp 10000 |
| #define | maxsites 8000 |
| #define | maxpatterns 8000 |
| #define | maxcategories 35 |
| #define | nmlngth 10 |
| #define | KI_MAX 256.0 |
| #define | RATE_STEP sqrt(sqrt(2.0)) |
| #define | MAX_ERROR 0.01 |
| #define | MIN_INFO 4 |
| #define | UNDEF_CATEGORY 1 |
| #define | zmin 1.0E-15 |
| #define | zmax (1.0 - 1.0E-6) |
| #define | unlikely -1.0E300 |
| #define | decimal_point '.' |
| #define | LOG(x) (((x)> 0) ? log(x) : hang("log domain error")) |
| #define | nint(x) ((int) ((x)>0 ? ((x)+0.5) : ((x)-0.5))) |
| #define | aint(x) ((double) ((int) (x))) |
Typedefs | |
| typedef double | xtype |
| typedef node * | nodeptr |
Variables | |
| const int | MAXNODES = 2*maxsp+1 |
Macro Definition Documentation
| #define Debug 1 |
Definition at line 15 of file DNAml_rates_1_0.h.
| #define maxsp 10000 |
Definition at line 19 of file DNAml_rates_1_0.h.
Referenced by getnums().
| #define maxsites 8000 |
Definition at line 20 of file DNAml_rates_1_0.h.
Referenced by getnums(), summarize(), and writeToArb().
| #define maxpatterns 8000 |
Definition at line 21 of file DNAml_rates_1_0.h.
Referenced by makeweights().
| #define maxcategories 35 |
Definition at line 22 of file DNAml_rates_1_0.h.
Referenced by getoptions(), summarize(), and writeToArb().
| #define nmlngth 10 |
Definition at line 23 of file DNAml_rates_1_0.h.
Referenced by findTipName(), getdata(), and inputweights().
| #define KI_MAX 256.0 |
Definition at line 24 of file DNAml_rates_1_0.h.
Referenced by makeUserRates(), and writeToArb().
| #define RATE_STEP sqrt(sqrt(2.0)) |
Definition at line 25 of file DNAml_rates_1_0.h.
Referenced by makeUserRates().
| #define MAX_ERROR 0.01 |
Definition at line 26 of file DNAml_rates_1_0.h.
Referenced by makeUserRates().
| #define MIN_INFO 4 |
Definition at line 27 of file DNAml_rates_1_0.h.
Referenced by getdata(), and getoptions().
| #define UNDEF_CATEGORY 1 |
Definition at line 28 of file DNAml_rates_1_0.h.
| #define zmin 1.0E-15 |
Definition at line 29 of file DNAml_rates_1_0.h.
Referenced by dli_dki(), evaluate(), and newview().
| #define zmax (1.0 - 1.0E-6) |
Definition at line 30 of file DNAml_rates_1_0.h.
Referenced by addElementLen().
| #define unlikely -1.0E300 |
Definition at line 31 of file DNAml_rates_1_0.h.
Referenced by findSiteRates(), and setuptree().
| #define decimal_point '.' |
Definition at line 32 of file DNAml_rates_1_0.h.
| #define LOG | ( | x | ) | (((x)> 0) ? log(x) : hang("log domain error")) |
Definition at line 38 of file DNAml_rates_1_0.h.
| #define nint | ( | x | ) | ((int) ((x)>0 ? ((x)+0.5) : ((x)-0.5))) |
Definition at line 39 of file DNAml_rates_1_0.h.
Referenced by categorize(), and gb_create_dictionaries().
| #define aint | ( | x | ) | ((double) ((int) (x))) |
Definition at line 40 of file DNAml_rates_1_0.h.
Typedef Documentation
| typedef double xtype |
Definition at line 43 of file DNAml_rates_1_0.h.
Definition at line 44 of file DNAml_rates_1_0.h.
Variable Documentation
Definition at line 50 of file DNAml_rates_1_0.h.
Referenced by ARB_main().
