#include "GDE_extglob.h"
#include "GDE_awars.h"
#include <awt_sel_boxes.hxx>
#include <awt_filter.hxx>
#include <aw_msg.hxx>
#include <aw_awar.hxx>
#include <aw_file.hxx>
#include <aw_root.hxx>
#include <aw_awar_defs.hxx>
#include <aw_select.hxx>
#include <arb_str.h>
#include <cmath>
#include <awt_config_manager.hxx>

Include dependency graph for GDE.cxx:

Classes
struct	gde_iteminfo

Macros
#define	SLIDERFIELDWIDTH 5

#define	SLIDERWIDTH 200

#define	AWAR_GDE_ALIGNMENT AWAR_PREFIX_GDE_TEMP "/alignment"

#define	AWAR_GDE_FILTER_NAME AWAR_PREFIX_GDE_TEMP "/filter/name"

#define	BUFSIZE 200

Functions
static void	GDE_showhelp_cb (UNFIXED, GmenuItem *gmenuitem)

static char *	GDE_makeawarname_in (GmenuItem gmenuitem, long i, const char awar_root)

char *	GDE_makeawarname (GmenuItem *gmenuitem, long i)

char *	GDE_maketmpawarname (GmenuItem *gmenuitem, long i)

static char *	gde_filter_weights (GBDATA *gb_sai)

static void	refresh_weights_sellist_cb (AW_root , AW_DB_selection saisel)

static AW_window *	GDE_create_filename_browser_window (AW_root aw_root, const char awar_prefix, const char *title)

static void	GDE_popup_filename_browser (AW_window aw, gde_iteminfo info, const char *title)

bool	shall_store_in_config (const GmenuItemArg &itemarg)

bool	want_config_manager (GmenuItem *gmenuitem)

static void	setup_gde_config_def (AWT_config_definition &cdef, GmenuItem *gmenuitem)

static AW_window *	GDE_menuitem_cb (AW_root aw_root, GmenuItem gmenuitem)

void	GDE_load_menu (AW_window awm, AW_active, const char menulabel)

GB_ERROR	GDE_init (AW_root aw_root, AW_default aw_def, GBDATA gb_main, GDE_get_sequences_cb get_sequences, GDE_format_alignment_cb format_ali, gde_window_type window_type)

Variables
adfiltercbstruct *	agde_filter = NULp

Gmenu	menu [GDEMAXMENU]

int	num_menus = 0

static char	GDEBLANK [] = "\0"

struct gde_database_access	db_access = { NULp, NULp, GDE_WINDOWTYPE_DEFAULT, NULp}

Macro Definition Documentation

#define SLIDERFIELDWIDTH 5

Definition at line 30 of file GDE.cxx.

Referenced by GDE_menuitem_cb().

#define SLIDERWIDTH 200

Definition at line 31 of file GDE.cxx.

Referenced by GDE_menuitem_cb().

#define AWAR_GDE_ALIGNMENT AWAR_PREFIX_GDE_TEMP "/alignment"

Definition at line 33 of file GDE.cxx.

Referenced by GDE_init(), and GDE_menuitem_cb().

#define AWAR_GDE_FILTER_NAME AWAR_PREFIX_GDE_TEMP "/filter/name"

Definition at line 34 of file GDE.cxx.

Referenced by GDE_init(), and GDE_menuitem_cb().

#define BUFSIZE 200

Referenced by AW_init_color_group_defaults(), GB_write_lossless_float(), GB_write_lossless_int(), GB_xcmd(), GDE_menuitem_cb(), LocationEditor::loc_awar_name(), ArbImporter::read_line(), SEQIO::read_string_pair(), readLine(), settingName(), strf(), throw_errorf(), truncate_4000(), and warningf().

Function Documentation

static void GDE_showhelp_cb	(	UNFIXED	,
		GmenuItem *	gmenuitem
	)

static

Definition at line 42 of file GDE.cxx.

References AW_help_popup(), aw_message(), GmenuItem::help, and NULp.

Referenced by GDE_menuitem_cb().

static char* GDE_makeawarname_in	(	GmenuItem *	gmenuitem,
		long	i,
		const char *	awar_root
	)

static

Definition at line 51 of file GDE.cxx.

References GmenuItem::arg, GBS_global_string_copy(), GBS_string_2_key(), GmenuItem::label, Gmenu::label, GmenuItem::parent_menu, and GmenuItemArg::symbol.

Referenced by GDE_makeawarname(), and GDE_maketmpawarname().

char* GDE_makeawarname	(	GmenuItem *	gmenuitem,
		long	i
	)

Definition at line 65 of file GDE.cxx.

References AWAR_PREFIX_GDE, and GDE_makeawarname_in().

Referenced by GDE_menuitem_cb(), ReplaceArgs(), and setup_gde_config_def().

char* GDE_maketmpawarname	(	GmenuItem *	gmenuitem,
		long	i
	)

Definition at line 66 of file GDE.cxx.

References AWAR_PREFIX_GDE_TEMP, and GDE_makeawarname_in().

Referenced by GDE_menuitem_cb(), GDE_popup_filename_browser(), and ReplaceArgs().

static char* gde_filter_weights ( GBDATA * gb_sai )

static

Definition at line 68 of file GDE.cxx.

References GB_clear_error(), GB_entry(), GB_get_root(), GB_MIND_CASE, GB_read_char_pntr(), GBS_global_string_copy(), GBS_string_matches(), GBT_get_default_alignment(), GBT_get_name_or_description(), NULp, result, and type.

Referenced by GDE_menuitem_cb().

static void refresh_weights_sellist_cb	(	AW_root *	,
		AW_DB_selection *	saisel
	)

static

Definition at line 95 of file GDE.cxx.

References AW_selection::refresh().

Referenced by GDE_menuitem_cb().

static AW_window* GDE_create_filename_browser_window	(	AW_root *	aw_root,
		const char *	awar_prefix,
		const char *	title
	)

static

Definition at line 99 of file GDE.cxx.

References AW_create_standard_fileselection(), AW_POPDOWN(), and GBS_string_2_key().

Referenced by GDE_popup_filename_browser().

static void GDE_popup_filename_browser	(	AW_window *	aw,
		gde_iteminfo *	info,
		const char *	title
	)

static

Definition at line 118 of file GDE.cxx.

References AW_window::activate(), GB_MIND_CASE, GBS_create_hash(), GBS_read_hash(), GBS_write_hash(), GDE_create_filename_browser_window(), GDE_maketmpawarname(), AW_window::get_root(), gde_iteminfo::idx, gde_iteminfo::item, NULp, and title.

Referenced by GDE_menuitem_cb().

bool shall_store_in_config ( const GmenuItemArg & itemarg )

inline

Definition at line 135 of file GDE.cxx.

References FILE_SELECTOR, and GmenuItemArg::type.

Referenced by setup_gde_config_def(), and want_config_manager().

bool want_config_manager ( GmenuItem * gmenuitem )

inline

Definition at line 138 of file GDE.cxx.

References GmenuItem::arg, GmenuItem::numargs, and shall_store_in_config().

Referenced by GDE_menuitem_cb().

static void setup_gde_config_def	(	AWT_config_definition &	cdef,
		GmenuItem *	gmenuitem
	)

static

Definition at line 145 of file GDE.cxx.

References AWT_config_definition::add(), GmenuItem::arg, gde_assert, GDE_makeawarname(), GmenuItem::numargs, shall_store_in_config(), and GmenuItemArg::symbol.

Referenced by GDE_menuitem_cb().

static AW_window* GDE_menuitem_cb	(	AW_root *	aw_root,
		GmenuItem *	gmenuitem
	)

static

Definition at line 162 of file GDE.cxx.

References GmenuItemArg::active_mask, AW_awar::add_callback(), ARB_strdup(), GmenuItem::arg, AW_create_fileselection_awars(), AW_HORIZONTAL, AW_POPDOWN(), AW_ROOT_DEFAULT, AW_SCALER_LINEAR, AW_VERTICAL, AW_root::awar(), AW_root::awar_float(), AWAR_GDE_ALIGNMENT, AWAR_GDE_COMPRESSION, AWAR_GDE_CUTOFF_STOPCODON, AWAR_GDE_FILTER_NAME, AWAR_GDE_SPECIES, AW_root::awar_int(), AW_root::awar_string(), GmenuItem::aws, awt_create_ALI_selection_list(), awt_create_SAI_selection_list(), awt_create_select_filter(), awt_create_select_filter_win(), awt_create_TREE_selection_list(), AWT_insert_config_manager(), BUFSIZE, GmenuItemArg::choice, CHOICE_MENU, CHOICE_SAI, CHOICE_TREE, CHOICE_WEIGHTS, CHOOSER, COMPRESS_ALL, COMPRESS_NONE, COMPRESS_NONINFO_COLUMNS, COMPRESS_VERTICAL_GAPS, db_access, FILE_SELECTOR, GmenuItemArg::fvalue, gde_database_access::gb_main, GBS_global_string_copy(), gde_assert, gde_filter_weights(), GDE_makeawarname(), GDE_maketmpawarname(), GDE_popup_filename_browser(), GDE_showhelp_cb(), GDE_startaction_cb(), GDE_WINDOWTYPE_DEFAULT, GDE_WINDOWTYPE_EDIT4, GDEBLANK, IF_ASSERTION_USED, GmenuItemArg::ivalue, GargChoice::label, GmenuItemArg::label, GmenuItem::label, Gmenu::label, label, GmenuItemArg::max, GargChoice::method, GmenuItemArg::min, NULp, GmenuItem::numargs, GmenuItemArg::numchoices, GmenuItem::numinputs, GmenuItem::parent_menu, AW_awar::read_string(), refresh_weights_sellist_cb(), GmenuItem::seqtype, AW_awar::set_minmax(), setup_gde_config_def(), SLIDER, SLIDERFIELDWIDTH, SLIDERWIDTH, TEXTFIELD, GmenuItemArg::textvalue, GmenuItemArg::textwidth, GmenuItemArg::type, want_config_manager(), gde_database_access::window_type, and AW_awar::write_string().

Referenced by GDE_load_menu().

void GDE_load_menu	(	AW_window *	awm,
		AW_active	,
		const char *	menulabel
	)

Definition at line 436 of file GDE.cxx.

References GmenuItem::active_mask, ARB_strBeginsWith(), AW_window::close_sub_menu(), db_access, gde_database_access::gb_main, gde_assert, GDE_menuitem_cb(), GmenuItem::help, AW_window::insert_menu_topic(), AW_window::insert_sub_menu(), Gmenu::item, GmenuItem::label, Gmenu::label, AW_window::makeWindowPopper(), GmenuItem::meta, Gmenu::meta, num_menus, Gmenu::numitems, and GmenuItem::popup.

Referenced by ED4_root::generate_window(), and popup_new_main_window().

GB_ERROR GDE_init	(	AW_root *	aw_root,
		AW_default	aw_def,
		GBDATA *	gb_main,
		GDE_get_sequences_cb	get_sequences,
		GDE_format_alignment_cb	format_ali,
		gde_window_type	window_type
	)