insdel.h File Reference

#include <arbdb_base.h>

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Enumerations
enum	UseRange { RANGES, SINGLE_COLUMNS }
enum	InsertWhere { INFRONTOF, BEHIND }

Functions
GB_ERROR	ARB_format_alignment (GBDATA *Main, const char *alignment_name)
GB_ERROR	ARB_insdel_columns (GBDATA *Main, const char *alignment_name, long pos, long count, const char *deletable_chars)
GB_ERROR	ARB_delete_columns_using_SAI (GBDATA *Main, const char *alignment_name, const RangeList &ranges, const char *deletable_chars)
GB_ERROR	ARB_insert_columns_using_SAI (GBDATA *Main, const char *alignment_name, const RangeList &ranges, UseRange units, InsertWhere where, size_t amount)
bool	ARB_is_alignment_relative_data (GBDATA *gb_data)

Enumeration Type Documentation

enum UseRange

Enumerator
RANGES
SINGLE_COLUMNS

Definition at line 19 of file insdel.h.

enum InsertWhere

Enumerator
INFRONTOF
BEHIND

Definition at line 20 of file insdel.h.

Function Documentation

GB_ERROR ARB_format_alignment	(	GBDATA *	Main,
		const char *	alignment_name
	)

Definition at line 1439 of file insdel.cxx.

References format_to_alilen(), GBT_check_data(), GENOM_ALIGNMENT, and NULp.

Referenced by ali_format_cb(), FINAL_TYPE< SEQTYPE >::finish(), nt_create_all_awars(), and NT_format_all_alignments().

GB_ERROR ARB_insdel_columns	(	GBDATA *	Main,
		const char *	alignment_name,
		long	pos,
		long	count,
		const char *	deletable_chars
	)

Definition at line 1453 of file insdel.cxx.

References apply_command_to_alignment(), error(), GBS_global_string(), and NULp.

Referenced by insdel_event().

GB_ERROR ARB_delete_columns_using_SAI	(	GBDATA *	Main,
		const char *	alignment_name,
		const RangeList &	ranges,
		const char *	deletable_chars
	)

Definition at line 1493 of file insdel.cxx.

References apply_command_to_alignment(), RangeList::empty(), error(), RangeList::rbegin(), and RangeList::rend().

Referenced by insdel_sai_event().

GB_ERROR ARB_insert_columns_using_SAI	(	GBDATA *	Main,
		const char *	alignment_name,
		const RangeList &	ranges,
		UseRange	units,
		InsertWhere	where,
		size_t	amount
	)

Definition at line 1512 of file insdel.cxx.

References apply_command_to_alignment(), BEHIND, RangeList::empty(), error(), INFRONTOF, NULp, RANGES, RangeList::rbegin(), RangeList::rend(), and SINGLE_COLUMNS.

Referenced by insdel_sai_event().

bool ARB_is_alignment_relative_data

(

GBDATA *

gb_data

)

Definition at line 1555 of file insdel.cxx.

References GB_DB, GB_get_father(), GB_read_key_pntr(), GB_read_type(), IDT_SAI, IDT_SPECIES, and AliEditor::shall_edit().

Referenced by split_alignment().