ARB_Tree.hxx File Reference

#include <AliView.hxx>
#include <downcast.h>
#include <TreeNode.h>
#include <AP_sequence.hxx>

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Classes
class	ARB_seqtree_root
struct	ARB_tree_info
class	ARB_seqtree
struct	ARB_tree_predicate
class	ARB_countedTree

Macros
#define	at_assert(cond)   arb_assert(cond)
#define	OVERRIDE_SEQ_ACCESSORS(SEQTYPE, BASETREETYPE)

Typedefs
typedef void(*	ARB_tree_node_del_cb )(GBDATA *, class ARB_seqtree *)

Functions
	MARK_NONFINAL_CLASS (ARB_seqtree_root)
	MARK_NONFINAL_FUNCTION (ARB_seqtree_root, GB_ERROR, loadFromDB,(const char *), NULp)
	MARK_NONFINAL_FUNCTION (ARB_seqtree_root, GB_ERROR, saveToDB,(), NULp)

Macro Definition Documentation

#define at_assert

(

cond

)

arb_assert(cond)

Definition at line 29 of file ARB_Tree.hxx.

Referenced by ARB_seqtree_root::ARB_seqtree_root(), arb_tree_species_deleted_cb(), ARB_seqtree_root::linkToDB(), ARB_seqtree_root::loadFromDB(), ARB_countedTree::relative_position_in(), ARB_seqtree_root::saveToDB(), ARB_seqtree_root::set_gb_tree(), ARB_seqtree_root::set_gb_tree_and_name(), ARB_seqtree::set_seq(), and ARB_seqtree_root::tree_deleted_cb().

#define OVERRIDE_SEQ_ACCESSORS	(		SEQTYPE,
			BASETREETYPE
	)

Value:

SEQTYPE *get_seq() { return DOWNCAST(SEQTYPE*,BASETREETYPE::get_seq()); }                                   \
    const SEQTYPE *get_seq() const { return DOWNCAST(const SEQTYPE*,BASETREETYPE::get_seq()); }                 \
    SEQTYPE *set_seq(AP_sequence *sequence) { return DOWNCAST(SEQTYPE*, BASETREETYPE::set_seq(sequence)); }     \

Definition at line 181 of file ARB_Tree.hxx.

Typedef Documentation

typedef void(* ARB_tree_node_del_cb)(GBDATA *, class ARB_seqtree *)

Definition at line 31 of file ARB_Tree.hxx.

Function Documentation

MARK_NONFINAL_CLASS

(

ARB_seqtree_root

)

MARK_NONFINAL_FUNCTION	(	ARB_seqtree_root	,
		GB_ERROR	,
		loadFromDB	,
		(const char *)	,
		NULp
	)

MARK_NONFINAL_FUNCTION	(	ARB_seqtree_root	,
		GB_ERROR	,
		saveToDB	,
		()	,
		NULp
	)