ED4_visualizeSAI.cxx File Reference

#include <ed4_extern.hxx>
#include "ed4_class.hxx"
#include <awt_canvas.hxx>
#include <awt_sel_boxes.hxx>
#include <awt_prompt.hxx>
#include <aw_awars.hxx>
#include <aw_preset.hxx>
#include <aw_msg.hxx>
#include <aw_root.hxx>
#include <aw_question.hxx>
#include <aw_select.hxx>
#include <arbdbt.h>
#include <ad_cb.h>
#include <arb_strbuf.h>
#include <iostream>

Include dependency graph for ED4_visualizeSAI.cxx:

Go to the source code of this file.

Macros
#define	AWAR_SAI_CLR_TAB   "saicolors/"
#define	AWAR_SAI_VISUALIZED   AWAR_SAI_CLR_TAB "current"
#define	AWAR_SAI_CLR_DEF   AWAR_SAI_CLR_TAB "clr_trans_tab/"
#define	AWAR_SAI_ENABLE   AWAR_SAI_CLR_TAB "enable"
#define	AWAR_SAI_ALL_SPECIES   AWAR_SAI_CLR_TAB "all_species"
#define	AWAR_SAI_AUTO_SELECT   AWAR_SAI_CLR_TAB "auto_select"
#define	AWAR_SAI_CLR_TRANS_TABLE   AWAR_SAI_CLR_TAB "clr_trans_table"
#define	AWAR_SAI_CLR_TRANS_TAB_NAMES   AWAR_SAI_CLR_TAB "clr_trans_tab_names"
#define	AWAR_SAI_CLR_TRANS_TAB_REL   AWAR_SAI_CLR_TAB "sai_relation/"
#define	AWAR_SAI_CLR   "tmp/sai/color_0"
#define	AWAR_SAI_CLR_COUNT   10
#define	BUFSIZE   100

Enumerations
enum	CreationMode { ED4_VIS_CREATE, ED4_VIS_COPY }

Functions
static const char *	getAwarName (int awarNo)
static const char *	getClrDefAwar (const char *awarName)
static void	setVisualizeSAI_cb (AW_root *awr)
static void	setVisualizeSAI_options_cb (AW_root *awr)
static bool	colorTransTable_exists (AW_root *awr, const char *name)
static void	colorDefChanged_callback (AW_root *awr, int awarNo)
static AW_awar *	sai_transtab_awar (AW_root *awr, const char *saiName)
static void	colorDefTabNameChanged_callback (AW_root *awr)
static void	refresh_display_cb (GB_CB_TYPE cb_type)
static void	saiChanged_callback (AW_root *awr)
static void	update_ClrTransTabNamesList_cb (AW_root *awr, AW_selection_list *colorTransList)
static void	autoselect_cb (AW_root *aw_root)
static void	set_autoselect_cb (AW_root *aw_root)
static void	addOrUpdateTransTable (AW_root *aw_root, const char *newClrTransTabName, const char *defaultDefinition, bool autoselect)
static void	addDefaultTransTable (AW_root *aw_root, const char *newClrTransTabName, const char *defaultDefinition)
void	ED4_createVisualizeSAI_Awars (AW_root *aw_root, AW_default aw_def)
static GB_ERROR	createCopy_table_handler (const char *dest_table_input, CreationMode mode)
static void	createCopy_ClrTransTab_cb (AW_window *aww, CreationMode mode)
static void	deleteColorTranslationTable (AW_window *aws)
static AW_selection_list *	buildClrTransTabNamesList (AW_window *aws)
const char *	ED4_getSaiColorString (AW_root *awr, int start, int end)
static void	reverseColorTranslationTable (AW_window *aww)
static AW_window *	create_editColorTranslationTable_window (AW_root *aw_root)
AW_window *	ED4_createVisualizeSAI_window (AW_root *aw_root)

Variables
static bool	clrDefinitionsChanged = false
static bool	inCallback = false
static bool	in_colorDefChanged_callback = false

Macro Definition Documentation

#define AWAR_SAI_CLR_TAB   "saicolors/"

Definition at line 36 of file ED4_visualizeSAI.cxx.

#define AWAR_SAI_VISUALIZED   AWAR_SAI_CLR_TAB "current"

Definition at line 37 of file ED4_visualizeSAI.cxx.

Referenced by autoselect_cb(), colorDefTabNameChanged_callback(), ED4_createVisualizeSAI_Awars(), ED4_createVisualizeSAI_window(), ED4_getSaiColorString(), and saiChanged_callback().

#define AWAR_SAI_CLR_DEF   AWAR_SAI_CLR_TAB "clr_trans_tab/"

Definition at line 38 of file ED4_visualizeSAI.cxx.

Referenced by getClrDefAwar().

#define AWAR_SAI_ENABLE   AWAR_SAI_CLR_TAB "enable"

Definition at line 39 of file ED4_visualizeSAI.cxx.

Referenced by ED4_createVisualizeSAI_Awars(), ED4_createVisualizeSAI_window(), refresh_display_cb(), and setVisualizeSAI_cb().

#define AWAR_SAI_ALL_SPECIES   AWAR_SAI_CLR_TAB "all_species"

Definition at line 40 of file ED4_visualizeSAI.cxx.

Referenced by ED4_createVisualizeSAI_Awars(), ED4_createVisualizeSAI_window(), and setVisualizeSAI_options_cb().

#define AWAR_SAI_AUTO_SELECT   AWAR_SAI_CLR_TAB "auto_select"

Definition at line 41 of file ED4_visualizeSAI.cxx.

Referenced by ED4_createVisualizeSAI_Awars(), ED4_createVisualizeSAI_window(), and set_autoselect_cb().

#define AWAR_SAI_CLR_TRANS_TABLE   AWAR_SAI_CLR_TAB "clr_trans_table"

Definition at line 42 of file ED4_visualizeSAI.cxx.

Referenced by addOrUpdateTransTable(), buildClrTransTabNamesList(), colorDefChanged_callback(), colorDefTabNameChanged_callback(), createCopy_ClrTransTab_cb(), createCopy_table_handler(), deleteColorTranslationTable(), ED4_createVisualizeSAI_Awars(), and saiChanged_callback().

#define AWAR_SAI_CLR_TRANS_TAB_NAMES   AWAR_SAI_CLR_TAB "clr_trans_tab_names"

Definition at line 43 of file ED4_visualizeSAI.cxx.

Referenced by addOrUpdateTransTable(), colorTransTable_exists(), deleteColorTranslationTable(), ED4_createVisualizeSAI_Awars(), ED4_createVisualizeSAI_window(), and update_ClrTransTabNamesList_cb().

#define AWAR_SAI_CLR_TRANS_TAB_REL   AWAR_SAI_CLR_TAB "sai_relation/"

Definition at line 44 of file ED4_visualizeSAI.cxx.

Referenced by sai_transtab_awar().

#define AWAR_SAI_CLR   "tmp/sai/color_0"

Definition at line 46 of file ED4_visualizeSAI.cxx.

Referenced by getAwarName().

#define AWAR_SAI_CLR_COUNT   10

Definition at line 47 of file ED4_visualizeSAI.cxx.

Referenced by create_editColorTranslationTable_window(), ED4_getSaiColorString(), and reverseColorTranslationTable().

#define BUFSIZE   100

Definition at line 57 of file ED4_visualizeSAI.cxx.

Referenced by getAwarName(), and getClrDefAwar().

Enumeration Type Documentation

enum CreationMode

Enumerator
ED4_VIS_CREATE
ED4_VIS_COPY

Definition at line 405 of file ED4_visualizeSAI.cxx.

Function Documentation

static const char* getAwarName ( int  awarNo )

static

Definition at line 58 of file ED4_visualizeSAI.cxx.

References AWAR_SAI_CLR, and BUFSIZE.

Referenced by colorDefChanged_callback(), colorDefTabNameChanged_callback(), create_editColorTranslationTable_window(), ED4_createVisualizeSAI_Awars(), ED4_getSaiColorString(), and reverseColorTranslationTable().

static const char* getClrDefAwar ( const char *  awarName )

static

Definition at line 67 of file ED4_visualizeSAI.cxx.

References AWAR_SAI_CLR_DEF, BUFSIZE, e4_assert, and IF_ASSERTION_USED.

Referenced by addOrUpdateTransTable(), colorDefChanged_callback(), colorDefTabNameChanged_callback(), createCopy_table_handler(), and deleteColorTranslationTable().

static void setVisualizeSAI_cb ( AW_root *  awr )

static

Definition at line 81 of file ED4_visualizeSAI.cxx.

References AW_root::awar(), AWAR_SAI_ENABLE, ED4_ROOT, AW_awar::read_int(), ED4_root::request_refresh_for_sequence_terminals(), and ED4_root::visualizeSAI.

Referenced by ED4_createVisualizeSAI_Awars().

static void setVisualizeSAI_options_cb ( AW_root *  awr )

static

Definition at line 86 of file ED4_visualizeSAI.cxx.

References AW_root::awar(), AWAR_SAI_ALL_SPECIES, ED4_ROOT, AW_awar::read_int(), ED4_root::request_refresh_for_sequence_terminals(), and ED4_root::visualizeSAI_allSpecies.

Referenced by ED4_createVisualizeSAI_Awars().

static bool colorTransTable_exists ( AW_root *  awr, const char *  name  )

static

Definition at line 91 of file ED4_visualizeSAI.cxx.

References AW_root::awar(), AWAR_SAI_CLR_TRANS_TAB_NAMES, NULp, and AW_awar::read_string().

Referenced by addOrUpdateTransTable(), and createCopy_table_handler().

static void colorDefChanged_callback ( AW_root *  awr, int  awarNo  )

static

Definition at line 118 of file ED4_visualizeSAI.cxx.

References aw_message(), AW_ROOT_DEFAULT, AW_root::awar(), AWAR_SAI_CLR_TRANS_TABLE, AW_root::awar_string(), GBS_strstruct::cat(), clrDefinitionsChanged, ED4_ROOT, GBS_escape_string(), GBS_strstruct::get_data(), getAwarName(), getClrDefAwar(), in_colorDefChanged_callback, inCallback, LocallyModify< T >::old_value(), GBS_strstruct::put(), AW_awar::read_string(), ED4_root::request_refresh_for_sequence_terminals(), s, and AW_awar::write_string().

Referenced by colorDefTabNameChanged_callback(), and ED4_createVisualizeSAI_Awars().

static AW_awar* sai_transtab_awar ( AW_root *  awr, const char *  saiName  )

static

Definition at line 188 of file ED4_visualizeSAI.cxx.

References AW_ROOT_DEFAULT, AWAR_SAI_CLR_TRANS_TAB_REL, AW_root::awar_string(), awarname(), GBS_global_string(), and GBS_string_2_key().

Referenced by colorDefTabNameChanged_callback(), and saiChanged_callback().

static void colorDefTabNameChanged_callback ( AW_root *  awr )

static

Definition at line 195 of file ED4_visualizeSAI.cxx.

References AW_ROOT_DEFAULT, AW_root::awar(), AWAR_SAI_CLR_TRANS_TABLE, AWAR_SAI_VISUALIZED, AW_root::awar_string(), clrDefinitionsChanged, colorDefChanged_callback(), e4_assert, ED4_ROOT, GBS_unescape_string(), getAwarName(), getClrDefAwar(), in_colorDefChanged_callback, inCallback, AW_awar::read_char_pntr(), AW_awar::read_string(), ED4_root::request_refresh_for_sequence_terminals(), sai_transtab_awar(), and AW_awar::write_string().

Referenced by ED4_createVisualizeSAI_Awars().

static void refresh_display_cb ( GB_CB_TYPE  cb_type )

static

Definition at line 257 of file ED4_visualizeSAI.cxx.

References ED4_root::aw_root, AW_root::awar(), AWAR_SAI_ENABLE, clrDefinitionsChanged, ED4_ROOT, GB_CB_CHANGED, AW_awar::read_int(), and ED4_root::request_refresh_for_sequence_terminals().

Referenced by saiChanged_callback().

static void saiChanged_callback ( AW_root *  awr )

static

Definition at line 266 of file ED4_visualizeSAI.cxx.

References AW_root::awar(), AWAR_SAI_CLR_TRANS_TABLE, AWAR_SAI_GLOBAL, AWAR_SAI_VISUALIZED, clrDefinitionsChanged, ED4_ROOT, GB_add_callback(), GB_CB_CHANGED, gb_main, GB_remove_callback(), GBT_find_SAI(), ED4_root::get_gb_main(), inCallback, NULp, AW_awar::read_string(), refresh_display_cb(), ED4_root::request_refresh_for_sequence_terminals(), sai_transtab_awar(), ta, and AW_awar::write_string().

Referenced by ED4_createVisualizeSAI_Awars().

static void update_ClrTransTabNamesList_cb ( AW_root *  awr, AW_selection_list *  colorTransList  )

static

Definition at line 309 of file ED4_visualizeSAI.cxx.

References AW_root::awar(), AWAR_SAI_CLR_TRANS_TAB_NAMES, AW_selection_list::clear(), AW_selection_list::insert(), AW_selection_list::insert_default(), NULp, AW_awar::read_string(), and AW_selection_list::update().

Referenced by buildClrTransTabNamesList(), and ED4_createVisualizeSAI_window().

static void autoselect_cb ( AW_root *  aw_root )

static

Definition at line 323 of file ED4_visualizeSAI.cxx.

References AW_root::awar(), AWAR_SAI_NAME, AWAR_SAI_VISUALIZED, AW_awar::read_string(), and AW_awar::write_string().

Referenced by set_autoselect_cb().

static void set_autoselect_cb ( AW_root *  aw_root )

static

Definition at line 332 of file ED4_visualizeSAI.cxx.

References AW_awar::add_callback(), autoselect_cb(), AW_root::awar(), AWAR_SAI_AUTO_SELECT, AWAR_SAI_NAME, AW_awar::read_int(), and AW_awar::remove_callback().

Referenced by ED4_createVisualizeSAI_Awars().

static void addOrUpdateTransTable ( AW_root *  aw_root, const char *  newClrTransTabName, const char *  defaultDefinition, bool  autoselect  )

static

Definition at line 347 of file ED4_visualizeSAI.cxx.

References AW_ROOT_DEFAULT, AW_root::awar(), AWAR_SAI_CLR_TRANS_TAB_NAMES, AWAR_SAI_CLR_TRANS_TABLE, AW_root::awar_string(), colorTransTable_exists(), GBS_global_string(), getClrDefAwar(), AW_awar::read_char_pntr(), and AW_awar::write_string().

Referenced by addDefaultTransTable(), and createCopy_table_handler().

static void addDefaultTransTable ( AW_root *  aw_root, const char *  newClrTransTabName, const char *  defaultDefinition  )

static

Definition at line 364 of file ED4_visualizeSAI.cxx.

References addOrUpdateTransTable().

Referenced by ED4_createVisualizeSAI_Awars().

void ED4_createVisualizeSAI_Awars	(	AW_root *	aw_root,
		AW_default	aw_def
	)

Definition at line 368 of file ED4_visualizeSAI.cxx.

References AW_awar::add_callback(), addDefaultTransTable(), AW_root::awar(), AW_root::awar_int(), AWAR_SAI_ALL_SPECIES, AWAR_SAI_AUTO_SELECT, AWAR_SAI_CLR_TRANS_TAB_NAMES, AWAR_SAI_CLR_TRANS_TABLE, AWAR_SAI_ENABLE, AWAR_SAI_VISUALIZED, AW_root::awar_string(), colorDefChanged_callback(), colorDefTabNameChanged_callback(), ED4_ROOT, getAwarName(), inCallback, AW_awar::read_int(), saiChanged_callback(), set_autoselect_cb(), setVisualizeSAI_cb(), setVisualizeSAI_options_cb(), ED4_root::visualizeSAI, and ED4_root::visualizeSAI_allSpecies.

Referenced by ed4_create_all_awars().

static GB_ERROR createCopy_table_handler ( const char *  dest_table_input, CreationMode  mode  )

static

Definition at line 410 of file ED4_visualizeSAI.cxx.

References addOrUpdateTransTable(), AW_root::awar(), AWAR_SAI_CLR_TRANS_TABLE, colorTransTable_exists(), ED4_VIS_COPY, ED4_VIS_CREATE, error(), GBS_global_string(), GBS_string_2_key(), getClrDefAwar(), NULp, AW_awar::read_char_pntr(), and AW_root::SINGLETON.

Referenced by createCopy_ClrTransTab_cb().

static void createCopy_ClrTransTab_cb ( AW_window *  aww, CreationMode  mode  )

static

Definition at line 442 of file ED4_visualizeSAI.cxx.

References AW_root::awar(), AWAR_SAI_CLR_TRANS_TABLE, AWT_activate_prompt(), createCopy_table_handler(), ED4_VIS_COPY, ED4_VIS_CREATE, AW_window::get_root(), and AW_awar::read_char_pntr().

Referenced by ED4_createVisualizeSAI_window().

static void deleteColorTranslationTable ( AW_window *  aws )

static

Definition at line 454 of file ED4_visualizeSAI.cxx.

References aw_message(), AW_root::awar(), AWAR_SAI_CLR_TRANS_TAB_NAMES, AWAR_SAI_CLR_TRANS_TABLE, AW_root::awar_string(), GBS_strstruct::cat(), GBS_strstruct::get_data(), AW_window::get_root(), getClrDefAwar(), NULp, GBS_strstruct::put(), AW_awar::read_char_pntr(), AW_awar::read_string(), and AW_awar::write_string().

Referenced by ED4_createVisualizeSAI_window().

static AW_selection_list* buildClrTransTabNamesList ( AW_window *  aws )

static

Definition at line 480 of file ED4_visualizeSAI.cxx.

References AWAR_SAI_CLR_TRANS_TABLE, AW_window::create_selection_list(), AW_window::get_root(), and update_ClrTransTabNamesList_cb().

Referenced by ED4_createVisualizeSAI_window().

const char* ED4_getSaiColorString	(	AW_root *	awr,
		int	start,
		int	end
	)

Definition at line 489 of file ED4_visualizeSAI.cxx.

References ARB_calloc(), AW_root::awar(), AWAR_SAI_CLR_COUNT, AWAR_SAI_VISUALIZED, clrDefinitionsChanged, e4_assert, ED4_G_CBACK_0, ED4_ROOT, GB_entry(), gb_main, GB_pop_transaction(), GB_push_transaction(), GB_read_as_string(), GB_read_char_pntr(), GBT_find_SAI(), ED4_root::get_alignment_name(), ED4_root::get_gb_main(), getAwarName(), NULp, AW_awar::read_string(), and start.

Referenced by ED4_host::get_SAI_background().

static void reverseColorTranslationTable ( AW_window *  aww )

static

Definition at line 585 of file ED4_visualizeSAI.cxx.

References AW_root::awar(), AWAR_SAI_CLR_COUNT, AW_window::get_root(), getAwarName(), AW_awar::read_string(), and AW_awar::write_string().

Referenced by create_editColorTranslationTable_window().

static AW_window* create_editColorTranslationTable_window ( AW_root *  aw_root )

static

Definition at line 606 of file ED4_visualizeSAI.cxx.

References AW_POPDOWN(), AWAR_SAI_CLR_COUNT, ED4_popup_gc_window(), ED4_ROOT, ED4_root::gc_manager, getAwarName(), NULp, and reverseColorTranslationTable().

Referenced by ED4_createVisualizeSAI_window().

AW_window* ED4_createVisualizeSAI_window

(

AW_root *

aw_root

)

Definition at line 638 of file ED4_visualizeSAI.cxx.

References AW_awar::add_callback(), AW_HORIZONTAL, AW_POPDOWN(), AW_root::awar(), AWAR_SAI_ALL_SPECIES, AWAR_SAI_AUTO_SELECT, AWAR_SAI_CLR_TRANS_TAB_NAMES, AWAR_SAI_ENABLE, AWAR_SAI_VISUALIZED, awt_create_SAI_selection_button(), buildClrTransTabNamesList(), create_editColorTranslationTable_window(), createCopy_ClrTransTab_cb(), deleteColorTranslationTable(), ED4_ROOT, ED4_VIS_COPY, ED4_VIS_CREATE, ED4_root::get_gb_main(), makeHelpCallback(), NULp, AW_awar::touch(), and update_ClrTransTabNamesList_cb().

Referenced by ED4_root::generate_window().

Variable Documentation

bool clrDefinitionsChanged = false

static

Definition at line 51 of file ED4_visualizeSAI.cxx.

Referenced by colorDefChanged_callback(), colorDefTabNameChanged_callback(), ED4_getSaiColorString(), refresh_display_cb(), and saiChanged_callback().

bool inCallback = false

static

Definition at line 52 of file ED4_visualizeSAI.cxx.

Referenced by colorDefChanged_callback(), colorDefTabNameChanged_callback(), ED4_createVisualizeSAI_Awars(), and saiChanged_callback().

bool in_colorDefChanged_callback = false

static

Definition at line 53 of file ED4_visualizeSAI.cxx.

Referenced by colorDefChanged_callback(), and colorDefTabNameChanged_callback().