Here is a list of all file members with links to the files they belong to:

- t -

T : trnsprob.h
T2I_ENTRIES_MAX : AP_pro_a_nucs.cxx
t_float : probe.h
t_int : probe.h
T_or_U_for_load : MP_Window.cxx
t_string : probe.h
ta : AW_awar.cxx
ta_assert : TreeAdmin.cxx
tab() : adlang1.cxx
TABSIZE : arb_help2xml.cxx
TalkingFunction : adcomm.cxx
Target : NT_taxonomy.cxx
TARGET : xferset.cxx
TARGET_ADMIN : AliAdmin.h
target_ali_name() : NT_split_ali.cxx
target_string_changed_cb() : probe_design.cxx
targetTypeName : insdel.cxx
TAX : NT_taxonomy.cxx
td_assert : Group.hxx , TreeDisplay.hxx
TDM_DIFF_LINECOUNT : arb_diff.h
TDM_IGNORE_TIMESTAMPS : arb_diff.h
TDM_NOT_DIFF_LINECOUNT : arb_diff.h
TEMP_DB_PATH : AW_global_awars.cxx
temp_minmax_changed_cb() : probe_design.cxx
TERMINAL_HEIGHT : ed4_defs.hxx , ED4_main.cxx
TerminalType : insdel.cxx
terminate_called() : UnitTester.cxx
TERMINATE_selection_type_mismatch() : AW_select.cxx
terminate_was_called : UnitTester.cxx
terminate_with() : prototypes.h , util.cxx
TERMINATED_ARRAY_ELEMS : arb_defs.h
TERMINATED_ON_ERROR : aisc_commands.c
TEST : admalloc.cxx , arb_perf_test.cxx
Test : arb_perf_test.cxx
test_accept_diff_lines() : arb_diff.cxx
test_address_valid() : server.c
TEST_BETTER_SCORE : fast_aligner.cxx
test_dtree : adoptimize.cxx
TEST_ERROR : test_unit.h
TEST_ERROR2 : test_unit.h
TEST_EXPECT : test_unit.h
TEST_EXPECT__BROKEN : test_unit.h
TEST_EXPECT_ANY_ERROR : test_unit.h
TEST_EXPECT_ANY_ERROR__BROKEN : test_unit.h
TEST_EXPECT_CODE_ASSERTION_FAILS : test_unit.h
TEST_EXPECT_CODE_ASSERTION_FAILS__UNWANTED : test_unit.h
TEST_EXPECT_CODE_ASSERTION_FAILS__WANTED : test_unit.h
TEST_EXPECT_COMBINES_PERFORMED : test_env.h
TEST_EXPECT_CONTAINS : test_unit.h
TEST_EXPECT_CONTAINS__BROKEN : test_unit.h
TEST_EXPECT_DIFFERENT : test_unit.h
TEST_EXPECT_DIFFERENT__BROKEN : test_unit.h
TEST_EXPECT_DOESNT_CONTAIN : test_unit.h
TEST_EXPECT_DOESNT_CONTAIN__BROKEN : test_unit.h
TEST_EXPECT_EQUAL : test_unit.h
TEST_EXPECT_EQUAL__BROKEN : test_unit.h
TEST_EXPECT_EQUAL__IGNARG : test_unit.h
TEST_EXPECT_ERROR_CONTAINS : test_unit.h
TEST_EXPECT_ERROR_CONTAINS__BROKEN : test_unit.h
TEST_EXPECT_FILES_DIFFER : test_unit.h
TEST_EXPECT_FILES_DIFFER__BROKEN : test_unit.h
TEST_EXPECT_FILES_EQUAL : test_unit.h
TEST_EXPECT_FILES_EQUAL__BROKEN : test_unit.h
TEST_EXPECT_IN_RANGE : test_unit.h
TEST_EXPECT_IN_RANGE__BROKEN : test_unit.h
TEST_EXPECT_LESS : test_unit.h
TEST_EXPECT_LESS__BROKEN : test_unit.h
TEST_EXPECT_LESS_EQUAL : test_unit.h
TEST_EXPECT_LESS_EQUAL__BROKEN : test_unit.h
TEST_EXPECT_MEM_EQUAL : test_unit.h
TEST_EXPECT_MEM_EQUAL__BROKEN : test_unit.h
TEST_EXPECT_MORE : test_unit.h
TEST_EXPECT_MORE__BROKEN : test_unit.h
TEST_EXPECT_MORE_EQUAL : test_unit.h
TEST_EXPECT_MORE_EQUAL__BROKEN : test_unit.h
TEST_EXPECT_NEWICK : test_unit.h
TEST_EXPECT_NEWICK__BROKEN : test_unit.h
TEST_EXPECT_NO_ERROR : test_unit.h
TEST_EXPECT_NO_ERROR__BROKEN : test_unit.h
TEST_EXPECT_NO_SEGFAULT : test_unit.h
TEST_EXPECT_NO_SEGFAULT__WANTED : test_unit.h
TEST_EXPECT_NULL : test_unit.h
TEST_EXPECT_NULL__BROKEN : test_unit.h
TEST_EXPECT_NULL__BROKEN_SIMPLE : test_unit.h
TEST_EXPECT_SAVED_NEWICK : test_unit.h
TEST_EXPECT_SAVED_NEWICK__BROKEN : test_unit.h
TEST_EXPECT_SEGFAULT : test_unit.h
TEST_EXPECT_SEGFAULT__UNWANTED : test_unit.h
TEST_EXPECT_SEGFAULT__WANTED : test_unit.h
TEST_EXPECT_SIMILAR : test_unit.h
TEST_EXPECT_SIMILAR__BROKEN : test_unit.h
TEST_EXPECT_STRARRAY_CONTAINS : test_unit.h
TEST_EXPECT_STRARRAY_CONTAINS__BROKEN : test_unit.h
TEST_EXPECT_TEXTFILE_DIFFLINES : test_unit.h
TEST_EXPECT_TEXTFILE_DIFFLINES__BROKEN : test_unit.h
TEST_EXPECT_TEXTFILE_DIFFLINES_IGNORE_DATES : test_unit.h
TEST_EXPECT_TEXTFILE_DIFFLINES_IGNORE_DATES__BROKEN : test_unit.h
TEST_EXPECT_TEXTFILES_DIFFER : test_unit.h
TEST_EXPECT_TEXTFILES_DIFFER__BROKEN : test_unit.h
TEST_EXPECT_TEXTFILES_EQUAL : test_unit.h
TEST_EXPECT_TEXTFILES_EQUAL__BROKEN : test_unit.h
TEST_EXPECT_VALID_TREE : TreeNode.h
TEST_EXPECT_VALID_TREE__BROKEN : TreeNode.h
TEST_EXPECT_VALID_TREE_OR_NULL : TreeNode.h
TEST_EXPECT_VALID_TREE_OR_NULL__BROKEN : TreeNode.h
TEST_EXPECT_ZERO : test_unit.h
TEST_EXPECT_ZERO__BROKEN : test_unit.h
TEST_EXPECT_ZERO_OR_SHOW_ERRNO : test_unit.h
TEST_EXPECTATION : test_unit.h
TEST_EXPECTATION__BROKEN : test_unit.h
TEST_EXPECTATION__BROKEN_AT_LOC : test_unit.h
TEST_EXPECTATION__BROKEN_SIMPLE : test_unit.h
TEST_EXPECTATION__BROKENIF : test_unit.h
TEST_EXPECTATION__WANTED : test_unit.h
test_export_active : AWTI_edit.cxx
TEST_EXPR_INITIALIZED : arb_debug.h
TEST_FAILED_POSTCONDITION : UnitTester.hxx
TEST_FAILS_INSIDE_VALGRIND : test_unit.h
TEST_FAILURE_OUTPUT_CONTAINS : command_output.h
TEST_FAILURE_OUTPUT_CONTAINS__BROKEN : command_output.h
test_fun : arb_perf_test.cxx
test_GB_find_string() : arb_perf_test.cxx
test_GB_find_string_indexed() : arb_perf_test.cxx
test_GB_iterate_DB() : arb_perf_test.cxx
test_import_active : AWTI_edit.cxx
TEST_INITIALIZED : arb_debug.h
TEST_INTERRUPTED : UnitTester.hxx
TEST_INVALID : UnitTester.hxx
TEST_IOERROR : test_unit.h
TEST_MAX_MISMATCH : ED4_search.cxx
TEST_MIN_MISMATCH : ED4_search.cxx
TEST_OK : UnitTester.hxx
TEST_OUTPUT_CONTAINS : command_output.h
TEST_OUTPUT_CONTAINS__BROKEN : command_output.h
TEST_OUTPUT_EQUALS : command_output.h
TEST_OUTPUT_EQUALS__BROKEN : command_output.h
TEST_OUTPUT_HAS_CHECKSUM : command_output.h
TEST_OUTPUT_HAS_CHECKSUM__BROKEN : command_output.h
test_ptserver_activate() : TestEnvironment.cxx
TEST_PUBLISH : test_unit.h
test_references_cb() : MG_preserves.cxx
TEST_REJECT : test_unit.h
TEST_REJECT__BROKEN : test_unit.h
TEST_REJECT_NULL : test_unit.h
TEST_REJECT_NULL__BROKEN : test_unit.h
TEST_REJECT_ZERO : test_unit.h
TEST_REJECT_ZERO__BROKEN : test_unit.h
TEST_RUN_TOOL : test_runtool.h
TEST_RUN_TOOL_FAILS : test_runtool.h
TEST_RUN_TOOL_NEVER_VALGRIND : test_runtool.h
TEST_SETUP_GLOBAL_ENVIRONMENT : test_unit.h
TEST_STDERR_CONTAINS : command_output.h
TEST_STDERR_EQUALS : command_output.h
TEST_STDOUT_CONTAINS : command_output.h
TEST_STDOUT_EQUALS : command_output.h
TEST_THREW : UnitTester.hxx
TEST_TRAPPED : UnitTester.hxx
TEST_UNKNOWN_RESULT : UnitTester.hxx
TEST_VALIDITY : test_unit.h
TEST_VALIDITY__BROKEN : test_unit.h
TEST_WARNING : test_unit.h
TEST_WARNING2 : test_unit.h
testCounts : adoptimize.cxx
testDictionaryCompression() : NT_dbrepair.cxx
TESTER_AWAR_PREFIX : AWTI_edit.cxx
TEXT : GDE_def.h
text_buffer : UnitTester.cxx
text_near_head() : TreeDisplay.cxx
textBetween() : adstring.cxx
TextDiffMode : arb_diff.h
TEXTFIELD : GDE_def.h
TEXTFIELDWIDTH : GDE_def.h
textfiles_have_difflines : test_unit.h
textfiles_have_difflines_ignoreDates : test_unit.h
TextOverlayCallback : aw_device.hxx
that : test_unit.h
the_XML_Document : xml.cxx , xml.hxx
THICKNESS : ED4_cursor.cxx
THR : AP_seq_simple_pro.hxx
Thres : align.cxx
throw_conversion_failure() : fconv.cxx , prototypes.h
throw_conversion_not_implemented() : fconv.cxx , prototypes.h
throw_conversion_not_supported() : fconv.cxx , prototypes.h
throw_error() : prototypes.h , util.cxx
throw_errorf() : prototypes.h , util.cxx
THROW_IF_NO : GDE_ParseMenu.cxx
THROW_IF_NO_ARG : GDE_ParseMenu.cxx
THROW_IF_NO_INPUT : GDE_ParseMenu.cxx
THROW_IF_NO_ITEM : GDE_ParseMenu.cxx
THROW_IF_NO_MENU : GDE_ParseMenu.cxx
THROW_IF_NO_OUTPUT : GDE_ParseMenu.cxx
throw_incomplete_entry() : fconv.cxx , prototypes.h
throw_IO_error() : RNA3D_StructureData.cxx
throw_unsupported_input_format() : fconv.cxx , prototypes.h
THROW_VALGRIND_WARNING : arb_debug.h
throwError() : GDE_ParseMenu.cxx
throwItemError() : GDE_ParseMenu.cxx
throwParseError() : GDE_ParseMenu.cxx
TIME_OUT : PT_main.cxx
timed_inotifications_check_cb() : AW_inotify.cxx
timed_window_title_cb() : AW_window.cxx
TIMEOUT : db_server.cxx
timer_calls : ED4_no_class.cxx
timer_calls_triggered : ED4_no_class.cxx
timer_ok : AW_status.cxx
timeSteps : rns.c , rns.h
TimeUnit : arb_sleep.h
tinvit_() : eispack.cxx
TIP_BOX_SIZE : irstree_display.cxx
title : readseq.c , AliAdmin.cxx
TITLE : defs.h
title_mode_changed() : ED4_root.cxx
tl_assert : Translate.cxx
TMP_AWAR_INSDEL : NT_ins_col.cxx
TN93 : trnsprob.h
to_arberr() : arb_handlers.cxx
to_arbout() : arb_handlers.cxx
to_gcg() : gcg.cxx , prototypes.h
to_indent() : xml.cxx
to_Location() : Location.cxx , Location.h
to_lower : ureadseq.h
to_macke() : convert.cxx
to_paup() : paup.cxx , prototypes.h
to_phylip() : phylip.cxx , prototypes.h
to_printable() : printable.cxx , prototypes.h
to_upper : ureadseq.h
today_date() : prototypes.h , date.cxx
toggle_advice_id() : AW_advice.cxx
toggle_advice_shown() : AW_advice.cxx
toggle_consensus_display() : ED4_consensus.cxx
toggle_cursor_group_folding() : ED4_edit_string.cxx
toggle_detailed_column_stat() : ED4_colStat.cxx
toggle_flag_cb() : db_query.cxx
toggle_helix_for_SAI() : ED4_root.cxx
toggle_mark_of_specData() : ED4_edit_string.cxx
toggle_type_mismatch() : AW_option_toggle.cxx
toInserted() : PARS_main.cxx
TOK_AT_WORD : aisc_token.h
TOK_BRACE_CLOSE : aisc_token.h
TOK_BRACE_OPEN : aisc_token.h
TOK_COMMA : aisc_token.h
TOK_EOS : aisc_token.h
TOK_INVALID : aisc_token.h
TOK_SEMI : aisc_token.h
TOK_WORD : aisc_token.h
TOKEN : aisc_token.h
TOKENSIZE : defs.h
tolowerstr : ureadseq.c
topo : rns.c , rns.h
topological_less() : CT_hash.hxx
tpl_assert : smartptr.h
tprobes_calculate_bonds() : PT_new_design.cxx
tprobes_sumup_perc_and_calc_quality() : PT_new_design.cxx
tql1_() : eispack.cxx
tql2_() : eispack.cxx
tqlrat_() : eispack.cxx
TRACE : NT_group_search.cxx
TRACE_ACI : gb_aci_impl.h
trace_over_braces() : arb_proto_2_xsub.cxx
TRACE_PREFIX : UnitTester.cxx
trace_termChange_in_global_awar() : ED4_cursor.cxx
TRACE_UPDATE() : AWT_canvas.cxx
track_ali_change_cb() : MP_Window.cxx
track_awar_change_cb() : AW_button.cxx
track_cursor : ED4_no_class.cxx
track_group_selection_by_canvas : NT_extern.cxx
trackable_species() : ScrollSynchronizer.cxx
trackAlignmentChanges() : NT_trackAliChanges.cxx
tracked_cursorpos : ED4_no_class.cxx
TrackedFilePtr : AW_inotify.cxx
transfer_field_of_listed_cb() : MG_species.cxx
transfer_field_of_selected_cb() : MG_species.cxx
transfer_single_field() : MG_species.cxx
transfer_tree() : MG_trees.cxx
transferProbeData() : SaiProbeVisualization.cxx , SaiProbeVisualization.hxx
transform_gbd_to_leaf() : PARS_main.cxx
transitionRate : rns.h , rns.c
transl_def_changed_cb() : SEC_db.cxx
translate_config_changed_cb() : saicalc.cxx
translate_gene_sequence() : GEN_translations.cxx
translate_getInfo() : Translate.cxx , Translate.hxx
translate_gui_changed_cb() : saicalc.cxx
translate_nuc2aa() : Translate.cxx , Translate.hxx
translate_removeInfo() : Translate.cxx , Translate.hxx
translate_saveInfo() : Translate.hxx , Translate.cxx
TranslateGeneToAminoAcidSequence() : ED4_ProteinViewer.cxx
TranslateMap : DBwriter.cxx
translateSAItoColors() : SaiProbeVisualization.cxx
TRANSLATION_RULES : saicalc.cxx
TranslationTableIndexType : AP_codon_table.hxx
transpro_event() : ad_transpro.cxx
transversionRate : rns.c , rns.h
TRAP_INT : UnitTester.cxx
TRAP_SEGV : UnitTester.cxx
TRAP_TERM : UnitTester.cxx
TRAP_UNEXPECTED : UnitTester.cxx
TrapCode : UnitTester.cxx
trbak1_() : eispack.cxx
trbak3_() : eispack.cxx
TREAT_AS_REGULAR : phylo.hxx
TREAT_AS_UPPERCASE : phylo.hxx
tred1_() : eispack.cxx
tred2_() : eispack.cxx
tred3_() : eispack.cxx
tree : ED4_search.cxx
tree2newick() : adtree.cxx
tree_assert : TreeRead.cxx , TreeWrite.cxx
TREE_auto_jump_cb() : TreeCallbacks.cxx , TreeCallbacks.hxx
TREE_BUTTON_OVERSIZE : NT_extern.cxx
tree_change_ignore_cb() : TreeDisplay.cxx
tree_changed_cb() : NT_branchAnalysis.cxx
TREE_COMPARE_PREFIX : NT_taxonomy.cxx
TREE_create_awars() : TreeDisplay.cxx , TreeDisplay.hxx
TREE_create_marker_settings_window() : TreeDisplay.hxx , TreeDisplay.cxx
TREE_create_settings_window() : TreeDisplay.hxx , TreeDisplay.cxx
tree_deleted_cbwrapper() : ARB_Tree.cxx
tree_export_config_mapping : ad_trees.cxx
TREE_export_tree() : TreeWrite.h , TreeWrite.cxx
TREE_GC_changed_cb() : TreeCallbacks.cxx , TreeCallbacks.hxx
tree_insert_jump_option_menu() : TreeDisplay.cxx
TREE_install_update_callbacks() : TreeDisplay.cxx , TreeDisplay.hxx
TREE_load() : TreeRead.cxx , TreeRead.h
tree_load_cb() : ad_trees.cxx
TREE_load_to_db() : TreeRead.h , TreeRead.cxx
tree_needs_recalc_cb() : DI_matr.cxx
tree_node_deleted_cb() : group_search.cxx
tree_of_cached_taxonomy() : adlang1.cxx
tree_read_byte() : AP_Tree.cxx
tree_read_float() : AP_Tree.cxx
TREE_recompute_and_resize_cb() : TreeDisplay.cxx
tree_recompute_cb() : TreeCallbacks.cxx
tree_renamed_cb() : AWT_TreeAwars.cxx
TREE_resize_cb() : TreeDisplay.cxx
tree_save_cb() : ad_trees.cxx
TREE_scale() : TreeTools.cxx , TreeRead.h
tree_set_default_order() : adtree.cxx
tree_setting_config_mapping : TreeDisplay.cxx
tree_size_ok() : ST_ml.cxx
TREE_SYNCROOT_AWAR_BASE : NT_syncroot.cxx
TREE_SYNCROOT_TEMP_BASE : NT_syncroot.cxx
tree_terminal_spec : ED4_terminal.cxx
TREE_TERMINAL_WIDTH : ed4_defs.hxx
tree_vars_callback() : ad_trees.cxx
tree_write_byte() : AP_Tree.cxx
tree_write_float() : AP_Tree.cxx
TREE_write_Newick() : TreeWrite.h , TreeWrite.cxx
TREE_write_XML() : TreeWrite.h , TreeWrite.cxx
TREE_XFER_MODE : MG_trees.cxx
TreeAwarChanged_cb() : AWT_TreeAwars.cxx
treeChangeIgnore_cb : TreeDisplay.cxx
TreeDataChanged_cb() : AWT_TreeAwars.cxx
TREEDISP_STACKSIZE : TreeDisplay.hxx
TREEDISP_TRUNCATION_MESSAGE : TreeDisplay.hxx
treeFinishCom() : arb_dnarates.cxx
treeFlushLabel() : arb_dnarates.cxx
treeFlushLen() : arb_dnarates.cxx
treeGetCh() : arb_dnarates.cxx
treeLength() : arb_dnarates.cxx
TreeModel : arbdbt.h
TreeNameSet : group_search.h
treeNeedCh() : arb_dnarates.cxx
TreeOrder : TreeNode.h
TreeOrderedSpecies_cmp() : DI_matr.cxx
TreePositionLookupPtr : NT_shadeTree.cxx
treeReadLen() : arb_dnarates.cxx
TreeSearchRange : NT_group_search.cxx
trf_begin() : struct_man.c , struct_man.h
trf_commit() : struct_man.c , struct_man.h
trf_create() : struct_man.c , struct_man.h
trf_hash() : struct_man.c
TRF_HASH_SIZE : struct_man.c
trf_level : struct_man.c
trf_link() : struct_man.h , struct_man.c
trf_sp : struct_man.c
triangular_number() : triangular.h
tridib_() : eispack.cxx
TRIES : servercntrl.cxx
trigger_auto_match() : probe_design.cxx
TRIGGER_SANITIZER : arb_assert.h
TRIGGER_UPDATE_GROUP_RESULTS : group_search.cxx
trim() : arb_proto_2_xsub.cxx , GDE_ParseMenu.cxx
TRP : AP_seq_simple_pro.hxx
true : ureadseq.h
TRUE : arb_a2ps.c , defs.h
TRUE_ : f2c.h
truncate_4000() : GDE_ParseMenu.cxx
TS_MOD_CLEAR : probe_design.cxx
TS_MOD_COMPL : probe_design.cxx
TS_MOD_REV_COMPL : probe_design.cxx
tsturm_() : eispack.cxx
TTIT_ARB : AP_codon_table.hxx
TTIT_arb2embl() : AP_codon_table.hxx , AP_codon_table.cxx
TTIT_EMBL : AP_codon_table.hxx
TTIT_embl2arb() : AP_codon_table.hxx , AP_codon_table.cxx
ttratio : arb_dnarates.cxx
TUNE_BRIGHT : aw_window.hxx
TUNE_BUTTON : aw_window.hxx
TUNE_DARK : aw_window.hxx
TUNE_INPUT : aw_window.hxx
TUNE_MENUTOPIC : aw_window.hxx
TUNE_SUBMENU : aw_window.hxx
twinfiles : arb_a2ps.c
twinpages : arb_a2ps.c
two_char() : date.cxx
TwoTreeMap : NT_taxonomy.cxx
type : item_sel_list.cxx
TYPE : probe_tree.h , xferset.cxx
type2id() : arb_proto_2_xsub.cxx
type_mismatch() : aw_window_Xm.hxx
type_types : probe.h
TypeClass : arb_proto_2_xsub.cxx
typefixhack() : mkptypes.cxx
TypeInfo : GDE_menu.h
typelist() : mkptypes.cxx
TYPEMAPPED : arb_proto_2_xsub.cxx
typeName : item_sel_list.cxx
TypeRegistry : AWT_input_mask.cxx
TypeRegistryIter : AWT_input_mask.cxx
TYR : AP_seq_simple_pro.hxx