NT_trackAliChanges.cxx File Reference

#include "NT_local.h"
#include <awt_sel_boxes.hxx>
#include <aw_awar.hxx>
#include <aw_root.hxx>
#include <aw_msg.hxx>
#include <arb_progress.h>
#include <arb_strbuf.h>
#include <arbdbt.h>
#include <ctime>
#include <string>
#include <list>
#include <algorithm>

Include dependency graph for NT_trackAliChanges.cxx:

Go to the source code of this file.

Macros
#define	AWAR_TRACK_BASE   "track/"
#define	AWAR_TRACK_ALI   AWAR_TRACK_BASE "ali"
#define	AWAR_TRACK_ID   AWAR_TRACK_BASE "initials"
#define	SEQ_HISTORY_FIELD   "seq_history"

Functions
static GB_ERROR	writeHistory (GBDATA *gb_species, const char *stamp, const char *entry)
static void	trackAlignmentChanges (AW_window *aww)
void	NT_create_trackAliChanges_Awars (AW_root *root, AW_default properties)
AW_window *	NT_create_trackAliChanges_window (AW_root *root)

Macro Definition Documentation

#define AWAR_TRACK_BASE   "track/"

Definition at line 26 of file NT_trackAliChanges.cxx.

#define AWAR_TRACK_ALI   AWAR_TRACK_BASE "ali"

Definition at line 27 of file NT_trackAliChanges.cxx.

Referenced by NT_create_trackAliChanges_Awars(), NT_create_trackAliChanges_window(), and trackAlignmentChanges().

#define AWAR_TRACK_ID   AWAR_TRACK_BASE "initials"

Definition at line 28 of file NT_trackAliChanges.cxx.

Referenced by NT_create_trackAliChanges_Awars(), NT_create_trackAliChanges_window(), and trackAlignmentChanges().

#define SEQ_HISTORY_FIELD   "seq_history"

Definition at line 30 of file NT_trackAliChanges.cxx.

Referenced by trackAlignmentChanges(), and writeHistory().

Function Documentation

static GB_ERROR writeHistory ( GBDATA *  gb_species, const char *  stamp, const char *  entry  )

static

Definition at line 35 of file NT_trackAliChanges.cxx.

References error(), GB_entry(), GB_read_char_pntr(), GB_read_string_count(), GB_write_string(), GBS_global_string_copy(), GBT_write_string(), GBS_strstruct::get_data(), GBS_strstruct::ncat(), NULp, GBS_strstruct::put(), and SEQ_HISTORY_FIELD.

Referenced by trackAlignmentChanges().

static void trackAlignmentChanges ( AW_window *  aww )

static

Definition at line 58 of file NT_trackAliChanges.cxx.

References aw_message(), AW_root::awar(), AWAR_TRACK_ALI, AWAR_TRACK_ID, GBS_strstruct::cat(), GBS_strstruct::catPadded(), GBS_strstruct::cut_tail(), error(), GB_await_error(), GB_create(), GB_entry(), NT_global::gb_main, GB_read_char_pntr(), GB_read_string(), GB_STRING, GB_warning_if(), GB_write_string(), GBS_checksum(), GBS_global_string(), GBS_global_string_copy(), GBS_string_2_key(), GBT_add_new_species_changekey(), GBT_find_sequence(), GBT_first_species(), GBT_get_name_or_description(), GBT_get_species_count(), GBT_next_species(), GBS_strstruct::get_data(), AW_window::get_root(), GLOBAL, arb_progress::inc_and_check_user_abort(), max, GBS_strstruct::nprintf(), NULp, AW_awar::read_char_pntr(), AW_awar::read_string(), seq, SEQ_HISTORY_FIELD, ta, and writeHistory().

Referenced by NT_create_trackAliChanges_window().

void NT_create_trackAliChanges_Awars	(	AW_root *	root,
		AW_default	properties
	)

Definition at line 191 of file NT_trackAliChanges.cxx.

References AW_root::awar_string(), AWAR_TRACK_ALI, AWAR_TRACK_ID, GB_getenvUSER(), NT_global::gb_main, and GLOBAL.

Referenced by nt_create_all_awars().

AW_window* NT_create_trackAliChanges_window

(

AW_root *

root

)

Definition at line 196 of file NT_trackAliChanges.cxx.

References AW_POPDOWN(), AWAR_TRACK_ALI, AWAR_TRACK_ID, awt_create_ALI_selection_list(), NT_global::gb_main, GLOBAL, AW_window::load_xfig(), makeHelpCallback(), and trackAlignmentChanges().

Referenced by popup_new_main_window().